Wall clock time and date at job start Tue Mar 31 2020 14:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99700 * 2 1 4 4 O 1.20823 * 120.00112 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99682 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47012 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47052 * 180.02562 * 6 5 3 8 8 C 1.50700 * 109.47266 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99752 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00475 * 179.97438 * 8 7 6 11 11 C 1.37130 * 119.99826 * 359.97438 * 10 8 7 12 12 H 1.08004 * 119.99603 * 359.97438 * 11 10 8 13 13 C 1.38878 * 120.00040 * 179.97438 * 11 10 8 14 14 N 1.31425 * 119.99901 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47130 * 90.00010 * 15 13 11 17 17 H 1.48494 * 109.47115 * 210.00085 * 15 13 11 18 18 H 1.48501 * 109.47082 * 330.00157 * 15 13 11 19 19 C 1.39834 * 120.00239 * 180.02562 * 10 8 7 20 20 C 1.38983 * 120.04679 * 269.72384 * 19 10 8 21 21 C 1.38042 * 119.94300 * 180.27916 * 20 19 10 22 22 C 1.38542 * 120.05599 * 359.97438 * 21 20 19 23 23 F 1.35101 * 119.95021 * 180.02562 * 22 21 20 24 24 C 1.38498 * 120.10074 * 0.02562 * 22 21 20 25 25 C 1.38076 * 120.05575 * 0.02562 * 24 22 21 26 26 C 1.50700 * 120.03072 * 179.97438 * 25 24 22 27 27 H 1.09003 * 109.47218 * 300.00178 * 1 2 3 28 28 H 1.09002 * 109.47006 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.46791 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47044 * 59.99786 * 5 3 2 31 31 H 1.08999 * 109.47101 * 300.00288 * 5 3 2 32 32 H 1.09004 * 109.46701 * 60.00250 * 6 5 3 33 33 H 1.08998 * 109.46875 * 300.00091 * 6 5 3 34 34 H 1.08994 * 109.47388 * 59.99910 * 7 6 5 35 35 H 1.09009 * 109.47394 * 300.00147 * 7 6 5 36 36 H 0.97009 * 119.99809 * 180.02562 * 14 13 11 37 37 H 1.07998 * 120.02809 * 0.24967 * 20 19 10 38 38 H 1.08010 * 119.97214 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.96864 * 180.02562 * 24 22 21 40 40 H 1.08997 * 109.47459 * 270.02423 * 26 25 24 41 41 H 1.09007 * 109.46750 * 30.01996 * 26 25 24 42 42 H 1.09000 * 109.47621 * 150.01643 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5279 2.8222 -0.0002 8 6 5.9553 4.2674 -0.0004 9 8 5.1199 5.1467 0.0001 10 7 7.2656 4.5827 0.0001 11 6 8.2101 3.5885 0.0012 12 1 7.9038 2.5528 0.0021 13 6 9.5603 3.9134 0.0011 14 7 9.9329 5.1738 -0.0005 15 14 10.8469 2.5591 0.0019 16 1 11.1879 2.1995 -1.3979 17 1 12.0668 3.0356 0.7018 18 1 10.3087 1.3654 0.7025 19 6 7.6620 5.9237 0.0005 20 6 7.8653 6.5897 -1.2023 21 6 8.2622 7.9118 -1.1994 22 6 8.4575 8.5750 0.0012 23 9 8.8455 9.8691 0.0016 24 6 8.2556 7.9133 1.2011 25 6 7.8596 6.5906 1.2033 26 6 7.6406 5.8710 2.5091 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 3.6100 3.2368 0.8894 33 1 3.6107 3.2356 -0.8906 34 1 5.9177 2.3277 -0.8899 35 1 5.9178 2.3285 0.8900 36 1 10.8760 5.4007 -0.0009 37 1 7.7132 6.0731 -2.1385 38 1 8.4199 8.4299 -2.1339 39 1 8.4081 8.4325 2.1358 40 1 8.5723 5.4031 2.8269 41 1 7.3153 6.5841 3.2667 42 1 6.8757 5.1055 2.3785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602388177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:43 Heat of formation + Delta-G solvation = -140.381231 kcal Electronic energy + Delta-G solvation = -27372.887553 eV Core-core repulsion = 23232.819517 eV Total energy + Delta-G solvation = -4140.068037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.02899 -40.46345 -39.60509 -37.45907 -36.60084 -34.81124 -33.93922 -31.81805 -31.60990 -29.62638 -28.48535 -27.14026 -26.12979 -24.91278 -23.08437 -21.58505 -20.77349 -20.28691 -19.25570 -17.92517 -17.32568 -16.72395 -16.69931 -16.27082 -15.96371 -15.77321 -15.04745 -14.89497 -14.71654 -14.37582 -13.81214 -13.75348 -13.33329 -13.04033 -12.93940 -12.64384 -12.48520 -12.41409 -12.23404 -12.08764 -11.69988 -11.59321 -11.49783 -11.27998 -11.19048 -11.02728 -10.90675 -10.71590 -10.52477 -10.45765 -10.40327 -10.38535 -10.27644 -9.52871 -8.66417 -8.13427 -7.84826 -7.60443 -6.14529 -4.09157 2.21925 2.29216 2.33775 2.67280 3.02779 3.12111 3.15055 3.68225 3.93972 4.47821 4.67773 4.74321 4.95082 4.99671 5.01190 5.14503 5.16736 5.20528 5.33274 5.52405 5.66716 5.70799 5.75247 5.80845 5.99332 6.04349 6.22222 6.28324 6.34405 6.42320 6.49424 6.51241 6.61245 6.70931 6.80050 7.02066 7.10674 7.19852 7.29090 7.51064 7.67288 7.74539 7.89260 8.33854 8.91975 9.27821 9.70749 10.54728 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.003534 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.670823 B = 7921.742133 C = 9409.183671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.502 6.502 5 C -0.113 4.113 6 C -0.092 4.092 7 C -0.119 4.119 8 C 0.463 3.537 9 O -0.591 6.591 10 N -0.418 5.418 11 C -0.342 4.342 12 H 0.107 0.893 13 C 0.037 3.963 14 N -0.855 5.855 15 Si 0.926 3.074 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.258 3.742 20 C -0.072 4.072 21 C -0.151 4.151 22 C 0.063 3.937 23 F -0.160 7.160 24 C -0.148 4.148 25 C -0.042 4.042 26 C -0.094 4.094 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.273 0.727 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -8.065 0.827 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.301 3.699 4 O -0.389 6.389 5 C -0.151 4.151 6 C -0.130 4.130 7 C -0.159 4.159 8 C 0.253 3.747 9 O -0.475 6.475 10 N -0.135 5.135 11 C -0.468 4.468 12 H 0.125 0.875 13 C -0.169 4.169 14 N -0.491 5.491 15 Si 0.752 3.248 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.166 3.834 20 C -0.092 4.092 21 C -0.170 4.170 22 C 0.044 3.956 23 F -0.139 7.139 24 C -0.168 4.168 25 C -0.044 4.044 26 C -0.151 4.151 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.183 -7.198 0.834 10.203 hybrid contribution 1.016 -0.461 -0.114 1.121 sum -6.167 -7.659 0.721 9.860 Atomic orbital electron populations 1.23222 0.76779 1.03376 1.02522 1.86521 1.23180 1.34035 1.84468 1.24053 0.92564 0.81085 0.72219 1.90698 1.67251 1.36285 1.44652 1.21512 0.86601 1.01135 1.05814 1.21175 0.95004 0.91927 1.04869 1.21368 0.94886 0.95697 1.03907 1.20077 0.81728 0.90812 0.82064 1.90616 1.51152 1.50135 1.55621 1.41398 1.04814 1.03460 1.63878 1.19748 0.85848 0.88199 1.52978 0.87491 1.25259 0.98224 0.97102 0.96287 1.69853 1.17328 1.15435 1.46508 0.85937 0.80113 0.80287 0.78449 1.20342 1.20808 1.19465 1.16770 0.91527 0.83473 0.91633 1.20654 0.98159 0.92964 0.97406 1.20549 1.05195 0.95445 0.95855 1.17396 1.05069 0.78367 0.94800 1.91372 1.89476 1.35504 1.97565 1.20447 1.05420 0.95011 0.95922 1.19426 0.97485 0.92487 0.94976 1.20506 1.01857 0.99276 0.93433 0.91995 0.92006 0.88340 0.87609 0.87601 0.90620 0.90631 0.89559 0.89566 0.91508 0.86998 0.86629 0.86615 0.91385 0.93322 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.15 10.57 -39.27 -0.41 -4.57 16 3 C 0.46 6.05 7.96 36.01 0.29 6.34 16 4 O -0.50 -8.37 15.73 -18.75 -0.29 -8.66 16 5 C -0.11 -1.28 5.81 -27.88 -0.16 -1.45 16 6 C -0.09 -1.41 3.79 -26.73 -0.10 -1.51 16 7 C -0.12 -1.96 4.07 -27.88 -0.11 -2.08 16 8 C 0.46 10.18 6.93 -10.99 -0.08 10.11 16 9 O -0.59 -14.80 15.95 5.55 0.09 -14.71 16 10 N -0.42 -9.64 1.80 -58.97 -0.11 -9.74 16 11 C -0.34 -7.68 9.39 -14.94 -0.14 -7.82 16 12 H 0.11 2.18 6.30 -52.48 -0.33 1.85 16 13 C 0.04 0.85 5.45 -17.49 -0.10 0.76 16 14 N -0.85 -20.65 9.31 55.49 0.52 -20.14 16 15 Si 0.93 18.07 29.55 -169.99 -5.02 13.05 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 19 C 0.26 6.10 2.20 -83.67 -0.18 5.92 16 20 C -0.07 -1.65 9.05 -39.38 -0.36 -2.01 16 21 C -0.15 -3.19 10.02 -39.54 -0.40 -3.59 16 22 C 0.06 1.34 7.30 -39.37 -0.29 1.05 16 23 F -0.16 -3.23 17.27 2.25 0.04 -3.19 16 24 C -0.15 -3.15 9.67 -39.54 -0.38 -3.53 16 25 C -0.04 -0.95 5.00 -104.42 -0.52 -1.47 16 26 C -0.09 -1.90 9.77 36.01 0.35 -1.55 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 33 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 34 H 0.09 1.30 7.91 -51.93 -0.41 0.89 16 35 H 0.09 1.30 7.90 -51.92 -0.41 0.89 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 39 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.05 0.85 8.09 -51.92 -0.42 0.43 16 42 H 0.06 1.31 6.90 -51.93 -0.36 0.95 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -29.60 362.97 -6.54 -36.15 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.71 Total: 5.82 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.11 Total: 0.53 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.41 Total: -29.88 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.62 Total: -27.94 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.60 -6.54 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602388177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.235 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds