Wall clock time and date at job start Tue Mar 31 2020 14:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99700 * 2 1 4 4 O 1.20823 * 120.00112 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99682 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47012 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47052 * 180.02562 * 6 5 3 8 8 C 1.50700 * 109.47266 * 180.02562 * 7 6 5 9 9 O 1.21284 * 119.99752 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00475 * 179.97438 * 8 7 6 11 11 C 1.37130 * 119.99826 * 359.97438 * 10 8 7 12 12 H 1.08004 * 119.99603 * 359.97438 * 11 10 8 13 13 C 1.38878 * 120.00040 * 179.97438 * 11 10 8 14 14 N 1.31425 * 119.99901 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47130 * 90.00010 * 15 13 11 17 17 H 1.48494 * 109.47115 * 210.00085 * 15 13 11 18 18 H 1.48501 * 109.47082 * 330.00157 * 15 13 11 19 19 C 1.39834 * 120.00239 * 180.02562 * 10 8 7 20 20 C 1.38983 * 120.04679 * 269.72384 * 19 10 8 21 21 C 1.38042 * 119.94300 * 180.27916 * 20 19 10 22 22 C 1.38542 * 120.05599 * 359.97438 * 21 20 19 23 23 F 1.35101 * 119.95021 * 180.02562 * 22 21 20 24 24 C 1.38498 * 120.10074 * 0.02562 * 22 21 20 25 25 C 1.38076 * 120.05575 * 0.02562 * 24 22 21 26 26 C 1.50700 * 120.03072 * 179.97438 * 25 24 22 27 27 H 1.09003 * 109.47218 * 300.00178 * 1 2 3 28 28 H 1.09002 * 109.47006 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.46791 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47044 * 59.99786 * 5 3 2 31 31 H 1.08999 * 109.47101 * 300.00288 * 5 3 2 32 32 H 1.09004 * 109.46701 * 60.00250 * 6 5 3 33 33 H 1.08998 * 109.46875 * 300.00091 * 6 5 3 34 34 H 1.08994 * 109.47388 * 59.99910 * 7 6 5 35 35 H 1.09009 * 109.47394 * 300.00147 * 7 6 5 36 36 H 0.97009 * 119.99809 * 180.02562 * 14 13 11 37 37 H 1.07998 * 120.02809 * 0.24967 * 20 19 10 38 38 H 1.08010 * 119.97214 * 180.02562 * 21 20 19 39 39 H 1.08002 * 119.96864 * 180.02562 * 24 22 21 40 40 H 1.08997 * 109.47459 * 270.02423 * 26 25 24 41 41 H 1.09007 * 109.46750 * 30.01996 * 26 25 24 42 42 H 1.09000 * 109.47621 * 150.01643 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5279 2.8222 -0.0002 8 6 5.9553 4.2674 -0.0004 9 8 5.1199 5.1467 0.0001 10 7 7.2656 4.5827 0.0001 11 6 8.2101 3.5885 0.0012 12 1 7.9038 2.5528 0.0021 13 6 9.5603 3.9134 0.0011 14 7 9.9329 5.1738 -0.0005 15 14 10.8469 2.5591 0.0019 16 1 11.1879 2.1995 -1.3979 17 1 12.0668 3.0356 0.7018 18 1 10.3087 1.3654 0.7025 19 6 7.6620 5.9237 0.0005 20 6 7.8653 6.5897 -1.2023 21 6 8.2622 7.9118 -1.1994 22 6 8.4575 8.5750 0.0012 23 9 8.8455 9.8691 0.0016 24 6 8.2556 7.9133 1.2011 25 6 7.8596 6.5906 1.2033 26 6 7.6406 5.8710 2.5091 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 3.6100 3.2368 0.8894 33 1 3.6107 3.2356 -0.8906 34 1 5.9177 2.3277 -0.8899 35 1 5.9178 2.3285 0.8900 36 1 10.8760 5.4007 -0.0009 37 1 7.7132 6.0731 -2.1385 38 1 8.4199 8.4299 -2.1339 39 1 8.4081 8.4325 2.1358 40 1 8.5723 5.4031 2.8269 41 1 7.3153 6.5841 3.2667 42 1 6.8757 5.1055 2.3785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602388177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:43 Heat of formation + Delta-G solvation = -154.430487 kcal Electronic energy + Delta-G solvation = -27373.496775 eV Core-core repulsion = 23232.819517 eV Total energy + Delta-G solvation = -4140.677258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.67648 -41.51184 -41.25121 -39.10747 -37.61755 -36.51425 -35.21561 -33.52335 -33.32096 -31.02303 -29.80332 -28.19555 -27.68864 -26.61420 -24.44622 -23.14378 -22.31314 -21.42949 -20.92331 -19.43116 -18.47272 -18.07041 -17.92285 -17.71122 -17.41970 -17.21880 -16.63416 -16.36716 -16.31086 -15.93797 -15.16223 -15.09989 -14.74943 -14.38719 -14.32521 -14.19341 -14.08474 -13.89990 -13.68540 -13.23639 -13.08020 -12.92482 -12.84436 -12.72589 -12.69138 -12.50668 -12.32971 -12.09270 -11.97594 -11.94711 -11.81222 -11.62469 -11.52740 -11.22041 -10.40968 -9.89743 -9.55315 -9.30365 -7.86669 -5.85528 0.58810 0.62650 1.21738 1.48676 1.55376 1.64404 1.79518 2.01720 2.33207 2.91802 2.96550 3.29185 3.52148 3.77111 4.00660 4.04599 4.08947 4.11994 4.28045 4.33999 4.34445 4.37008 4.63974 4.64574 4.68826 4.73841 4.75663 4.78277 4.84854 4.91062 4.96957 5.11912 5.23559 5.33905 5.36494 5.42387 5.48453 5.50124 5.57904 5.81108 5.95587 6.19989 6.60402 6.77189 7.18505 7.57599 7.99819 8.81779 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.003534 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.670823 B = 7921.742133 C = 9409.183671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.547 6.547 5 C -0.104 4.104 6 C -0.082 4.082 7 C -0.108 4.108 8 C 0.449 3.551 9 O -0.632 6.632 10 N -0.425 5.425 11 C -0.350 4.350 12 H 0.130 0.870 13 C -0.004 4.004 14 N -0.878 5.878 15 Si 0.989 3.011 16 H -0.281 1.281 17 H -0.295 1.295 18 H -0.252 1.252 19 C 0.238 3.762 20 C -0.094 4.094 21 C -0.151 4.151 22 C 0.055 3.945 23 F -0.153 7.153 24 C -0.150 4.150 25 C -0.063 4.063 26 C -0.085 4.085 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -10.336 1.252 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.437 6.437 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.147 4.147 8 C 0.241 3.759 9 O -0.519 6.519 10 N -0.142 5.142 11 C -0.476 4.476 12 H 0.147 0.853 13 C -0.206 4.206 14 N -0.516 5.516 15 Si 0.814 3.186 16 H -0.207 1.207 17 H -0.222 1.222 18 H -0.176 1.176 19 C 0.146 3.854 20 C -0.114 4.114 21 C -0.170 4.170 22 C 0.036 3.964 23 F -0.132 7.132 24 C -0.170 4.170 25 C -0.065 4.065 26 C -0.142 4.142 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.797 -9.510 1.260 11.757 hybrid contribution 0.839 0.289 -0.265 0.926 sum -5.958 -9.221 0.995 11.024 Atomic orbital electron populations 1.23520 0.75243 1.05634 1.02235 1.86508 1.24699 1.32781 1.83836 1.24396 0.93260 0.80924 0.70949 1.90691 1.68311 1.37803 1.46935 1.21478 0.85498 0.98371 1.08707 1.20982 0.94137 0.94578 1.02353 1.21375 0.95463 0.92073 1.05827 1.21073 0.81044 0.92829 0.80945 1.90581 1.52074 1.51949 1.57304 1.41653 1.05389 1.03490 1.63658 1.20239 0.85874 0.89051 1.52391 0.85260 1.26010 0.99845 0.98772 0.96011 1.70016 1.16869 1.17093 1.47600 0.84963 0.77263 0.78450 0.77963 1.20704 1.22154 1.17580 1.17116 0.91764 0.84247 0.92290 1.20754 0.99518 0.93902 0.97206 1.20781 1.04189 0.94986 0.97037 1.17485 1.05223 0.78725 0.94971 1.91385 1.89389 1.34909 1.97549 1.20739 1.04458 0.94765 0.97006 1.19741 0.97953 0.93242 0.95541 1.20437 1.01201 0.99316 0.93199 0.92335 0.92375 0.84792 0.84604 0.84527 0.93191 0.93327 0.87433 0.87312 0.92352 0.87603 0.84347 0.84254 0.91703 0.90829 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.47 10.57 -51.45 -0.54 -8.02 16 3 C 0.46 11.56 7.96 71.24 0.57 12.13 16 4 O -0.55 -18.44 15.73 21.97 0.35 -18.09 16 5 C -0.10 -2.09 5.81 29.85 0.17 -1.91 16 6 C -0.08 -2.48 3.79 30.59 0.12 -2.37 16 7 C -0.11 -3.40 4.07 29.85 0.12 -3.27 16 8 C 0.45 19.85 6.93 87.66 0.61 20.45 16 9 O -0.63 -32.66 15.95 -3.04 -0.05 -32.71 16 10 N -0.43 -19.60 1.80 -458.87 -0.83 -20.43 16 11 C -0.35 -15.32 9.39 84.02 0.79 -14.53 16 12 H 0.13 4.91 6.30 -2.91 -0.02 4.89 16 13 C 0.00 -0.16 5.45 84.91 0.46 0.30 16 14 N -0.88 -42.50 9.31 21.65 0.20 -42.30 16 15 Si 0.99 36.01 29.55 68.60 2.03 38.04 16 16 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.30 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 19 C 0.24 11.40 2.20 38.21 0.08 11.48 16 20 C -0.09 -4.39 9.05 22.40 0.20 -4.19 16 21 C -0.15 -6.39 10.02 22.30 0.22 -6.17 16 22 C 0.06 2.32 7.30 22.40 0.16 2.49 16 23 F -0.15 -6.03 17.27 44.97 0.78 -5.25 16 24 C -0.15 -6.31 9.67 22.29 0.22 -6.09 16 25 C -0.06 -2.85 5.00 -19.74 -0.10 -2.95 16 26 C -0.08 -3.40 9.77 71.24 0.70 -2.70 16 27 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 28 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 29 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.75 8.06 -2.39 -0.02 1.73 16 33 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 34 H 0.11 2.95 7.91 -2.39 -0.02 2.93 16 35 H 0.11 2.95 7.90 -2.38 -0.02 2.93 16 36 H 0.27 12.73 8.31 -92.70 -0.77 11.96 16 37 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.14 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.07 2.50 8.09 -2.38 -0.02 2.48 16 42 H 0.05 2.04 6.90 -2.39 -0.02 2.03 16 Total: -1.00 -65.83 362.97 8.48 -57.34 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 1.03 Total: 27.13 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.52 Total: 4.29 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.63 Total: -62.73 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -0.25 Total: -58.82 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.78 Total: -5.25 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -65.83 8.48 -57.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602388177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.090 kcal (2) G-P(sol) polarization free energy of solvation -65.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds