Wall clock time and date at job start Tue Mar 31 2020 14:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38274 * 119.96630 * 2 1 4 4 C 1.38284 * 120.14419 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.96840 * 180.02562 * 4 3 2 6 6 C 1.38118 * 120.06778 * 359.97438 * 4 3 2 7 7 C 1.38870 * 119.92972 * 0.02562 * 6 4 3 8 8 N 1.39922 * 120.07375 * 179.97438 * 7 6 4 9 9 C 1.46500 * 120.00207 * 292.11986 * 8 7 6 10 10 C 1.50700 * 109.46893 * 269.99813 * 9 8 7 11 11 H 1.07993 * 120.00169 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00004 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00189 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99755 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46727 * 90.00647 * 14 12 10 16 16 H 1.48501 * 109.46945 * 210.00177 * 14 12 10 17 17 H 1.48492 * 109.47404 * 330.00284 * 14 12 10 18 18 C 1.34773 * 120.00154 * 112.11024 * 8 7 6 19 19 O 1.21288 * 120.00080 * 355.27750 * 18 8 7 20 20 C 1.50697 * 120.00345 * 174.99585 * 18 8 7 21 21 S 1.81402 * 109.47466 * 180.28043 * 20 18 8 22 22 C 1.81404 * 102.99993 * 180.02562 * 21 20 18 23 23 C 1.53002 * 109.46606 * 179.97438 * 22 21 20 24 24 O 1.42906 * 109.46704 * 179.97438 * 23 22 21 25 25 C 1.38118 * 119.96225 * 180.28167 * 2 1 3 26 26 H 1.09003 * 109.47683 * 89.99781 * 1 2 3 27 27 H 1.09007 * 109.47324 * 210.00036 * 1 2 3 28 28 H 1.08998 * 109.47214 * 329.99857 * 1 2 3 29 29 H 1.07997 * 119.92877 * 359.97438 * 3 2 1 30 30 H 1.09007 * 109.47106 * 269.98015 * 5 4 3 31 31 H 1.09001 * 109.47006 * 29.97973 * 5 4 3 32 32 H 1.08996 * 109.47339 * 149.98133 * 5 4 3 33 33 H 1.08003 * 120.03434 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47009 * 29.99335 * 9 8 7 35 35 H 1.08998 * 109.47656 * 149.99503 * 9 8 7 36 36 H 0.96998 * 119.99877 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47477 * 300.28039 * 20 18 8 38 38 H 1.09000 * 109.46911 * 60.28156 * 20 18 8 39 39 H 1.08997 * 109.47035 * 300.00232 * 22 21 20 40 40 H 1.09002 * 109.46874 * 60.00304 * 22 21 20 41 41 H 1.08994 * 109.47180 * 299.99838 * 23 22 21 42 42 H 1.09002 * 109.46992 * 60.00700 * 23 22 21 43 43 H 0.96699 * 114.00150 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.03850 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5805 1.2022 -0.0005 5 6 4.3292 2.5100 0.0001 6 6 4.2762 0.0090 -0.0005 7 6 3.5855 -1.1957 -0.0005 8 7 4.2873 -2.4063 -0.0011 9 6 5.0675 -2.8002 -1.1768 10 6 4.1961 -3.5953 -2.1146 11 1 3.1645 -3.7883 -1.8601 12 6 4.7162 -4.0773 -3.2970 13 7 3.9559 -4.7716 -4.1152 14 14 6.5009 -3.7440 -3.7369 15 1 7.3541 -4.8368 -3.2049 16 1 6.6429 -3.6795 -5.2137 17 1 6.9243 -2.4511 -3.1420 18 6 4.2456 -3.2098 1.0801 19 8 3.6713 -2.8459 2.0844 20 6 4.9072 -4.5632 1.0390 21 16 4.6710 -5.4004 2.6309 22 6 5.5230 -6.9836 2.3897 23 6 5.4138 -7.8210 3.6656 24 8 6.0844 -9.0685 3.4754 25 6 2.1968 -1.1966 -0.0059 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6560 2.1322 -0.0004 30 1 4.5096 2.8258 -1.0275 31 1 3.7373 3.2672 0.5143 32 1 5.2821 2.3829 0.5137 33 1 5.3562 0.0130 -0.0014 34 1 5.4311 -1.9082 -1.6871 35 1 5.9147 -3.4100 -0.8631 36 1 4.3217 -5.1103 -4.9472 37 1 4.4616 -5.1616 0.2443 38 1 5.9732 -4.4408 0.8475 39 1 5.0624 -7.5215 1.5611 40 1 6.5736 -6.8002 2.1646 41 1 5.8747 -7.2829 4.4938 42 1 4.3632 -8.0044 3.8910 43 1 6.0553 -9.6522 4.2458 44 1 1.6568 -2.1319 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603308063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:13 Heat of formation + Delta-G solvation = -63.895399 kcal Electronic energy + Delta-G solvation = -24811.704949 eV Core-core repulsion = 21241.166763 eV Total energy + Delta-G solvation = -3570.538186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08786 -38.38853 -37.10740 -35.39962 -33.27502 -32.78864 -31.27945 -30.96965 -29.06800 -27.91940 -26.91933 -26.42368 -23.21343 -22.69496 -22.07216 -20.40834 -18.65274 -17.82863 -17.19651 -16.72901 -16.20773 -15.88525 -15.72371 -15.50164 -15.27185 -14.65308 -14.36898 -14.19854 -13.78180 -13.50056 -13.16432 -13.04561 -12.83604 -12.66015 -12.56028 -12.38539 -12.34651 -12.17741 -12.10288 -11.77727 -11.63321 -11.41701 -11.23489 -11.05155 -10.83083 -10.78252 -10.39506 -10.18397 -9.83245 -9.72729 -9.47553 -8.82941 -8.62481 -8.21391 -7.78059 -7.46894 -6.31063 -4.34177 1.50686 1.69479 1.73277 2.65689 3.03627 3.09341 3.17788 3.19670 3.59967 4.04701 4.17314 4.25767 4.83089 4.93247 4.97632 5.00037 5.03402 5.10862 5.29797 5.36817 5.39396 5.44391 5.52802 5.62238 5.68581 5.70316 5.76209 5.80736 5.82420 5.86117 5.96068 6.03359 6.13707 6.33721 6.44540 6.49915 6.75978 6.86856 6.93015 7.07371 7.30481 7.40312 7.48944 7.83899 8.24533 8.63435 8.75010 9.26494 10.81167 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008822 B = 0.004405 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.973910 B = 6355.263418 C = 8293.217010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.108 4.108 6 C -0.130 4.130 7 C 0.180 3.820 8 N -0.551 5.551 9 C 0.209 3.791 10 C -0.545 4.545 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.885 5.885 14 Si 0.868 3.132 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.541 3.459 19 O -0.533 6.533 20 C -0.112 4.112 21 S -0.185 6.185 22 C -0.113 4.113 23 C 0.097 3.903 24 O -0.572 6.572 25 C -0.104 4.104 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.382 0.618 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 4.146 10.634 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.149 4.149 4 C -0.081 4.081 5 C -0.165 4.165 6 C -0.149 4.149 7 C 0.089 3.911 8 N -0.279 5.279 9 C 0.089 3.911 10 C -0.583 4.583 11 H 0.099 0.901 12 C -0.124 4.124 13 N -0.522 5.522 14 Si 0.694 3.306 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.188 1.188 18 C 0.329 3.671 19 O -0.410 6.410 20 C -0.263 4.263 21 S 0.040 5.960 22 C -0.261 4.261 23 C 0.018 3.982 24 O -0.378 6.378 25 C -0.124 4.124 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.229 0.771 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.850 4.815 11.267 12.282 hybrid contribution 1.574 -0.755 -1.355 2.209 sum 2.424 4.061 9.912 10.982 Atomic orbital electron populations 1.20750 0.91275 1.02434 1.02227 1.19699 0.95884 0.92631 0.99541 1.20766 0.93336 0.97182 1.03595 1.19623 0.93714 0.94607 1.00171 1.20731 0.99724 0.93977 1.02094 1.21000 0.99686 0.91146 1.03094 1.17415 0.90504 0.85095 0.98088 1.45443 1.48824 1.17454 1.16177 1.19984 0.91411 0.96757 0.82962 1.21290 0.99479 1.34139 1.03394 0.90132 1.24840 0.97619 0.94235 0.95752 1.69875 1.36147 1.35040 1.11158 0.86977 0.85465 0.79518 0.78663 1.19748 1.20608 1.18806 1.19530 0.80212 0.84770 0.82631 1.90695 1.44440 1.74505 1.31385 1.23523 1.05522 0.97902 0.99347 1.86983 1.73771 1.14948 1.20270 1.23329 1.04130 0.96988 1.01689 1.21680 0.96584 0.84321 0.95628 1.86469 1.78820 1.29266 1.43269 1.21100 0.93188 0.97947 1.00128 0.91194 0.91591 0.91833 0.86430 0.91337 0.91780 0.91797 0.86244 0.94239 0.94977 0.92191 0.85212 0.87362 0.89093 0.89466 0.92675 0.92548 0.77095 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 36.00 0.36 -1.06 16 2 C -0.08 -1.26 5.88 -104.65 -0.62 -1.87 16 3 C -0.13 -1.94 9.35 -39.55 -0.37 -2.31 16 4 C -0.08 -1.23 5.88 -104.65 -0.62 -1.84 16 5 C -0.11 -1.24 10.01 36.00 0.36 -0.88 16 6 C -0.13 -2.30 9.34 -39.39 -0.37 -2.67 16 7 C 0.18 3.63 4.74 -83.69 -0.40 3.23 16 8 N -0.55 -11.53 2.50 -114.74 -0.29 -11.82 16 9 C 0.21 4.56 3.95 -5.19 -0.02 4.54 16 10 C -0.54 -14.03 9.69 -34.44 -0.33 -14.36 16 11 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 12 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 14 Si 0.87 19.36 27.47 -169.99 -4.67 14.69 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 18 C 0.54 11.16 7.55 -10.99 -0.08 11.08 16 19 O -0.53 -12.06 15.63 5.55 0.09 -11.97 16 20 C -0.11 -2.00 5.09 36.00 0.18 -1.82 16 21 S -0.18 -3.00 20.87 -107.50 -2.24 -5.25 16 22 C -0.11 -1.51 6.31 37.16 0.23 -1.27 16 23 C 0.10 1.07 7.05 37.16 0.26 1.34 16 24 O -0.57 -6.19 13.66 -35.23 -0.48 -6.68 16 25 C -0.10 -2.03 9.22 -39.39 -0.36 -2.39 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 28 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 34 H 0.04 0.87 6.92 -51.93 -0.36 0.51 16 35 H 0.03 0.65 5.91 -51.93 -0.31 0.35 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.13 2.44 7.89 -51.92 -0.41 2.03 16 38 H 0.11 1.73 7.27 -51.92 -0.38 1.35 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.38 2.16 9.12 45.56 0.42 2.58 16 44 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -31.78 383.22 -9.02 -40.80 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.11 Total: 7.16 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.86 Total: -8.28 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.49 Total: -36.26 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.39 Total: -18.65 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.24 Total: -5.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.78 -9.02 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603308063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.098 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds