Wall clock time and date at job start Tue Mar 31 2020 14:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38274 * 119.96630 * 2 1 4 4 C 1.38284 * 120.14419 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.96840 * 180.02562 * 4 3 2 6 6 C 1.38118 * 120.06778 * 359.97438 * 4 3 2 7 7 C 1.38870 * 119.92972 * 0.02562 * 6 4 3 8 8 N 1.39922 * 120.07375 * 179.97438 * 7 6 4 9 9 C 1.46500 * 120.00207 * 292.11986 * 8 7 6 10 10 C 1.50700 * 109.46893 * 269.99813 * 9 8 7 11 11 H 1.07993 * 120.00169 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00004 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00189 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99755 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46727 * 90.00647 * 14 12 10 16 16 H 1.48501 * 109.46945 * 210.00177 * 14 12 10 17 17 H 1.48492 * 109.47404 * 330.00284 * 14 12 10 18 18 C 1.34773 * 120.00154 * 112.11024 * 8 7 6 19 19 O 1.21288 * 120.00080 * 355.27750 * 18 8 7 20 20 C 1.50697 * 120.00345 * 174.99585 * 18 8 7 21 21 S 1.81402 * 109.47466 * 180.28043 * 20 18 8 22 22 C 1.81404 * 102.99993 * 180.02562 * 21 20 18 23 23 C 1.53002 * 109.46606 * 179.97438 * 22 21 20 24 24 O 1.42906 * 109.46704 * 179.97438 * 23 22 21 25 25 C 1.38118 * 119.96225 * 180.28167 * 2 1 3 26 26 H 1.09003 * 109.47683 * 89.99781 * 1 2 3 27 27 H 1.09007 * 109.47324 * 210.00036 * 1 2 3 28 28 H 1.08998 * 109.47214 * 329.99857 * 1 2 3 29 29 H 1.07997 * 119.92877 * 359.97438 * 3 2 1 30 30 H 1.09007 * 109.47106 * 269.98015 * 5 4 3 31 31 H 1.09001 * 109.47006 * 29.97973 * 5 4 3 32 32 H 1.08996 * 109.47339 * 149.98133 * 5 4 3 33 33 H 1.08003 * 120.03434 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.47009 * 29.99335 * 9 8 7 35 35 H 1.08998 * 109.47656 * 149.99503 * 9 8 7 36 36 H 0.96998 * 119.99877 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47477 * 300.28039 * 20 18 8 38 38 H 1.09000 * 109.46911 * 60.28156 * 20 18 8 39 39 H 1.08997 * 109.47035 * 300.00232 * 22 21 20 40 40 H 1.09002 * 109.46874 * 60.00304 * 22 21 20 41 41 H 1.08994 * 109.47180 * 299.99838 * 23 22 21 42 42 H 1.09002 * 109.46992 * 60.00700 * 23 22 21 43 43 H 0.96699 * 114.00150 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.03850 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5805 1.2022 -0.0005 5 6 4.3292 2.5100 0.0001 6 6 4.2762 0.0090 -0.0005 7 6 3.5855 -1.1957 -0.0005 8 7 4.2873 -2.4063 -0.0011 9 6 5.0675 -2.8002 -1.1768 10 6 4.1961 -3.5953 -2.1146 11 1 3.1645 -3.7883 -1.8601 12 6 4.7162 -4.0773 -3.2970 13 7 3.9559 -4.7716 -4.1152 14 14 6.5009 -3.7440 -3.7369 15 1 7.3541 -4.8368 -3.2049 16 1 6.6429 -3.6795 -5.2137 17 1 6.9243 -2.4511 -3.1420 18 6 4.2456 -3.2098 1.0801 19 8 3.6713 -2.8459 2.0844 20 6 4.9072 -4.5632 1.0390 21 16 4.6710 -5.4004 2.6309 22 6 5.5230 -6.9836 2.3897 23 6 5.4138 -7.8210 3.6656 24 8 6.0844 -9.0685 3.4754 25 6 2.1968 -1.1966 -0.0059 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5138 29 1 1.6560 2.1322 -0.0004 30 1 4.5096 2.8258 -1.0275 31 1 3.7373 3.2672 0.5143 32 1 5.2821 2.3829 0.5137 33 1 5.3562 0.0130 -0.0014 34 1 5.4311 -1.9082 -1.6871 35 1 5.9147 -3.4100 -0.8631 36 1 4.3217 -5.1103 -4.9472 37 1 4.4616 -5.1616 0.2443 38 1 5.9732 -4.4408 0.8475 39 1 5.0624 -7.5215 1.5611 40 1 6.5736 -6.8002 2.1646 41 1 5.8747 -7.2829 4.4938 42 1 4.3632 -8.0044 3.8910 43 1 6.0553 -9.6522 4.2458 44 1 1.6568 -2.1319 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603308063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:12 Heat of formation + Delta-G solvation = -83.876010 kcal Electronic energy + Delta-G solvation = -24812.571373 eV Core-core repulsion = 21241.166763 eV Total energy + Delta-G solvation = -3571.404610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59508 -39.79538 -37.95144 -37.05448 -34.73405 -34.43390 -32.73105 -31.98522 -30.59979 -29.60923 -28.04927 -27.64157 -24.61518 -24.25126 -23.38968 -21.64348 -20.17603 -19.17124 -18.71555 -18.27203 -17.79342 -17.20108 -17.07388 -16.63215 -16.59365 -16.17899 -15.91041 -15.34317 -15.01942 -14.83257 -14.59289 -14.37862 -14.08060 -14.00714 -13.94164 -13.82456 -13.54663 -13.41919 -13.33060 -13.22306 -12.85785 -12.61796 -12.55137 -12.40132 -12.36737 -12.13858 -11.97831 -11.76996 -11.13549 -11.06403 -11.01011 -10.84371 -10.13698 -9.50503 -9.27423 -8.78801 -8.35789 -6.44775 0.20578 0.37067 0.41230 1.34771 1.37043 1.39535 1.42478 1.46510 2.06072 2.28630 2.72347 2.97399 3.43100 3.47235 3.85435 3.88629 3.89665 3.94323 4.07038 4.14903 4.24003 4.32094 4.39280 4.42164 4.44143 4.60003 4.66847 4.68398 4.69564 4.75668 4.78908 4.88707 4.91059 4.97111 5.09844 5.29765 5.34782 5.43354 5.52146 5.64144 5.71471 6.02424 6.14725 6.35181 6.59662 6.83604 7.02664 7.21116 8.80286 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.008822 B = 0.004405 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.973910 B = 6355.263418 C = 8293.217010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.075 4.075 5 C -0.106 4.106 6 C -0.145 4.145 7 C 0.143 3.857 8 N -0.553 5.553 9 C 0.218 3.782 10 C -0.543 4.543 11 H 0.029 0.971 12 C 0.024 3.976 13 N -0.938 5.938 14 Si 0.937 3.063 15 H -0.256 1.256 16 H -0.283 1.283 17 H -0.240 1.240 18 C 0.535 3.465 19 O -0.558 6.558 20 C -0.108 4.108 21 S -0.202 6.202 22 C -0.104 4.104 23 C 0.102 3.898 24 O -0.587 6.587 25 C -0.140 4.140 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.270 0.730 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.404 0.596 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 6.256 11.377 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 C -0.145 4.145 4 C -0.076 4.076 5 C -0.162 4.162 6 C -0.165 4.165 7 C 0.053 3.947 8 N -0.280 5.280 9 C 0.097 3.903 10 C -0.581 4.581 11 H 0.047 0.953 12 C -0.176 4.176 13 N -0.576 5.576 14 Si 0.759 3.241 15 H -0.181 1.181 16 H -0.209 1.209 17 H -0.163 1.163 18 C 0.323 3.677 19 O -0.438 6.438 20 C -0.259 4.259 21 S 0.022 5.978 22 C -0.253 4.253 23 C 0.023 3.977 24 O -0.397 6.397 25 C -0.160 4.160 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.175 0.825 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.147 0.853 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.256 0.744 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.784 6.929 12.042 14.169 hybrid contribution 0.829 -1.417 -1.540 2.252 sum 3.613 5.512 10.502 12.398 Atomic orbital electron populations 1.20811 0.89067 1.03577 1.03033 1.20113 0.97668 0.92114 0.98250 1.21237 0.93539 0.97921 1.01786 1.20162 0.94272 0.95485 0.97669 1.20816 0.99949 0.92070 1.03381 1.21219 1.00328 0.91139 1.03807 1.17819 0.90964 0.85682 1.00241 1.45455 1.48705 1.18119 1.15723 1.19823 0.91227 0.96524 0.82706 1.21369 0.97811 1.34464 1.04501 0.95264 1.25753 1.02757 0.93724 0.95364 1.70040 1.38768 1.36885 1.11951 0.85872 0.79214 0.80845 0.78190 1.18082 1.20913 1.16278 1.19979 0.79937 0.85510 0.82252 1.90658 1.45594 1.75253 1.32263 1.23427 1.06279 0.96258 0.99912 1.86991 1.74818 1.16923 1.19025 1.23364 1.03837 0.95241 1.02860 1.21588 0.97169 0.84483 0.94493 1.86405 1.78713 1.29383 1.45178 1.21107 0.93479 0.98222 1.03150 0.90434 0.92384 0.88758 0.82491 0.90001 0.89404 0.91044 0.85301 0.93573 0.92618 0.92103 0.86851 0.85193 0.89885 0.88715 0.91373 0.92078 0.74445 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 10.01 71.24 0.71 -2.01 16 2 C -0.08 -2.63 5.88 -19.88 -0.12 -2.75 16 3 C -0.13 -3.48 9.35 22.29 0.21 -3.27 16 4 C -0.08 -2.13 5.88 -19.88 -0.12 -2.24 16 5 C -0.11 -2.00 10.01 71.23 0.71 -1.29 16 6 C -0.15 -5.08 9.34 22.39 0.21 -4.87 16 7 C 0.14 5.98 4.74 38.15 0.18 6.16 16 8 N -0.55 -23.97 2.50 -635.31 -1.59 -25.56 16 9 C 0.22 9.57 3.95 85.63 0.34 9.91 16 10 C -0.54 -29.17 9.69 25.60 0.25 -28.93 16 11 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 12 C 0.02 1.27 5.47 84.66 0.46 1.74 16 13 N -0.94 -55.47 13.96 21.45 0.30 -55.17 16 14 Si 0.94 39.38 27.47 68.60 1.88 41.26 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 18 C 0.53 22.96 7.55 87.66 0.66 23.62 16 19 O -0.56 -26.39 15.63 -3.05 -0.05 -26.44 16 20 C -0.11 -3.96 5.09 71.24 0.36 -3.60 16 21 S -0.20 -6.65 20.87 -56.49 -1.18 -7.83 16 22 C -0.10 -2.72 6.31 71.98 0.45 -2.27 16 23 C 0.10 2.11 7.05 71.98 0.51 2.62 16 24 O -0.59 -11.63 13.66 -148.98 -2.04 -13.66 16 25 C -0.14 -5.78 9.22 22.39 0.21 -5.57 16 26 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.53 8.09 -2.38 -0.02 1.51 16 28 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 29 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 32 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.05 1.98 6.92 -2.39 -0.02 1.96 16 35 H 0.06 2.19 5.91 -2.39 -0.01 2.18 16 36 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.11 4.50 7.89 -2.39 -0.02 4.48 16 38 H 0.13 4.08 7.27 -2.39 -0.02 4.06 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.40 3.72 9.12 -74.06 -0.68 3.04 16 44 H 0.09 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -73.16 383.22 2.63 -70.53 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.26 Total: 29.61 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.03 Total: -12.74 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.29 Total: -80.73 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -2.08 Total: -40.10 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.88 Total: 41.26 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -1.18 Total: -7.83 kcal Total: -73.16 2.63 -70.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603308063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.341 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds