Wall clock time and date at job start Tue Mar 31 2020 14:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38306 * 119.96744 * 2 1 4 4 C 1.38256 * 120.14154 * 180.28514 * 3 2 1 5 5 C 1.38138 * 120.06848 * 359.44074 * 4 3 2 6 6 C 1.38846 * 119.93009 * 0.28530 * 5 4 3 7 7 N 1.39926 * 120.07140 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00200 * 89.99386 * 7 6 5 9 9 C 1.50700 * 109.46828 * 90.00362 * 8 7 6 10 10 H 1.08001 * 120.00282 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99646 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99804 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00472 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46952 * 89.99599 * 13 11 9 15 15 H 1.48492 * 109.47096 * 210.00095 * 13 11 9 16 16 H 1.48503 * 109.46512 * 330.00147 * 13 11 9 17 17 C 1.34776 * 119.99638 * 269.99841 * 7 6 5 18 18 O 1.21291 * 119.99834 * 179.97438 * 17 7 6 19 19 C 1.50703 * 120.00127 * 359.97438 * 17 7 6 20 20 S 1.81404 * 109.47029 * 180.02562 * 19 17 7 21 21 C 1.81394 * 102.99827 * 179.97438 * 20 19 17 22 22 C 1.52996 * 109.47130 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47516 * 180.02562 * 22 21 20 24 24 C 1.38091 * 119.96189 * 179.73254 * 2 1 3 25 25 C 1.50705 * 120.03685 * 0.02562 * 24 2 1 26 26 H 1.09009 * 109.46856 * 270.27563 * 1 2 3 27 27 H 1.09004 * 109.47426 * 30.26954 * 1 2 3 28 28 H 1.09001 * 109.47902 * 150.27595 * 1 2 3 29 29 H 1.08000 * 119.92474 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.96773 * 179.72706 * 4 3 2 31 31 H 1.08000 * 120.03436 * 180.30254 * 5 4 3 32 32 H 1.09004 * 109.47143 * 209.99815 * 8 7 6 33 33 H 1.08998 * 109.47343 * 330.00612 * 8 7 6 34 34 H 0.97006 * 119.99710 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.46947 * 300.00048 * 19 17 7 36 36 H 1.08994 * 109.46755 * 60.00386 * 19 17 7 37 37 H 1.09001 * 109.47712 * 300.00301 * 21 20 19 38 38 H 1.09004 * 109.47276 * 60.00088 * 21 20 19 39 39 H 1.09005 * 109.47265 * 299.99960 * 22 21 20 40 40 H 1.09004 * 109.47458 * 60.00156 * 22 21 20 41 41 H 0.96698 * 114.00400 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47043 * 269.98318 * 25 24 2 43 43 H 1.08994 * 109.46922 * 29.98617 * 25 24 2 44 44 H 1.09003 * 109.46744 * 149.98281 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0060 5 6 4.2761 0.0090 -0.0002 6 6 3.5856 -1.1955 0.0055 7 7 4.2874 -2.4060 0.0107 8 6 4.6554 -3.0339 1.2822 9 6 3.5524 -3.9619 1.7219 10 1 2.6658 -4.0725 1.1152 11 6 3.6747 -4.6689 2.8992 12 7 2.7119 -5.4783 3.2833 13 14 5.2079 -4.4770 3.9490 14 1 5.0065 -3.3736 4.9222 15 1 5.4675 -5.7422 4.6818 16 1 6.3683 -4.1626 3.0774 17 6 4.6249 -2.9943 -1.1540 18 8 5.2336 -4.0433 -1.1495 19 6 4.2459 -2.3486 -2.4619 20 16 4.8361 -3.3750 -3.8363 21 6 4.2934 -2.4495 -5.2989 22 6 4.7215 -3.1971 -6.5633 23 8 4.2945 -2.4677 -7.7157 24 6 2.1966 -1.1963 0.0056 25 6 1.4431 -2.5015 0.0111 26 1 -0.3633 0.0049 1.0278 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3635 -0.8924 -0.5095 29 1 1.6561 2.1324 0.0004 30 1 4.1170 2.1396 -0.0104 31 1 5.3561 0.0130 0.0000 32 1 5.5776 -3.6008 1.1540 33 1 4.8047 -2.2632 2.0383 34 1 2.7978 -5.9755 4.1118 35 1 3.1616 -2.2535 -2.5194 36 1 4.7012 -1.3603 -2.5244 37 1 3.2079 -2.3517 -5.2851 38 1 4.7475 -1.4585 -5.2910 39 1 5.8070 -3.2951 -6.5775 40 1 4.2671 -4.1879 -6.5711 41 1 4.5328 -2.8840 -8.5553 42 1 1.2613 -2.8117 1.0401 43 1 0.4908 -2.3733 -0.5034 44 1 2.0323 -3.2633 -0.4994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603311221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:49 Heat of formation + Delta-G solvation = -52.353418 kcal Electronic energy + Delta-G solvation = -25451.893155 eV Core-core repulsion = 21881.855467 eV Total energy + Delta-G solvation = -3570.037688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26275 -38.44881 -37.21632 -35.20504 -33.26092 -32.62246 -31.16134 -30.64229 -30.13748 -27.95128 -26.82029 -25.98267 -23.30494 -22.41802 -22.13793 -20.64735 -18.78216 -17.94882 -17.16356 -16.89802 -16.25729 -15.88650 -15.75183 -15.54545 -15.13516 -14.70963 -14.47802 -14.06186 -13.91760 -13.82844 -13.20529 -12.93867 -12.80708 -12.64159 -12.51580 -12.37699 -12.23370 -12.21688 -11.78661 -11.72072 -11.65551 -11.53424 -11.09142 -10.95854 -10.75172 -10.55933 -10.29376 -10.17371 -9.93273 -9.56053 -9.35356 -8.61359 -8.39875 -8.25622 -8.01893 -7.59554 -6.10392 -4.09380 1.38809 1.44613 1.55814 2.51787 3.06917 3.26020 3.33811 3.37989 3.63778 3.85058 4.12997 4.38488 4.68683 4.72845 4.85375 4.97210 5.03281 5.14902 5.18641 5.21109 5.22868 5.35080 5.35679 5.48462 5.48736 5.58238 5.68413 5.72422 5.85257 6.06590 6.09876 6.19448 6.34589 6.55304 6.60909 6.66307 6.77908 6.89115 6.94463 7.04014 7.27667 7.29121 7.56197 8.09282 8.41920 8.73346 8.93297 9.49299 11.01606 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.004594 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.722267 B = 6092.874905 C = 7749.412279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.142 3.858 7 N -0.550 5.550 8 C 0.220 3.780 9 C -0.537 4.537 10 H 0.093 0.907 11 C 0.077 3.923 12 N -0.895 5.895 13 Si 0.868 3.132 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.264 1.264 17 C 0.534 3.466 18 O -0.508 6.508 19 C -0.119 4.119 20 S -0.168 6.168 21 C -0.115 4.115 22 C 0.095 3.905 23 O -0.573 6.573 24 C -0.062 4.062 25 C -0.117 4.117 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.046 0.954 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.383 0.617 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 12.806 -14.380 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.144 4.144 6 C 0.051 3.949 7 N -0.279 5.279 8 C 0.101 3.899 9 C -0.576 4.576 10 H 0.111 0.889 11 C -0.126 4.126 12 N -0.533 5.533 13 Si 0.695 3.305 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.189 1.189 17 C 0.319 3.681 18 O -0.383 6.383 19 C -0.270 4.270 20 S 0.057 5.943 21 C -0.264 4.264 22 C 0.017 3.983 23 O -0.380 6.380 24 C -0.063 4.063 25 C -0.173 4.173 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.230 0.770 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.051 11.512 -13.708 17.900 hybrid contribution 0.274 0.992 0.483 1.137 sum 0.223 12.504 -13.225 18.202 Atomic orbital electron populations 1.20840 0.91265 1.02540 1.02524 1.19663 0.96007 0.92193 1.00861 1.20968 0.94150 0.97200 1.01392 1.20882 0.94135 0.97288 1.01724 1.21345 1.00027 0.91755 1.01308 1.17505 0.90109 0.85736 1.01529 1.45379 1.54722 1.20517 1.07278 1.19825 0.97978 0.93328 0.78788 1.21584 1.04617 1.24019 1.07333 0.88907 1.24796 0.95956 0.94583 0.97266 1.69874 1.32571 1.27610 1.23261 0.86964 0.84562 0.77965 0.81021 1.20177 1.20908 1.18881 1.19349 0.80118 0.84896 0.83706 1.90736 1.39857 1.21445 1.86268 1.23548 1.05685 1.02459 0.95310 1.87317 1.76220 1.33904 0.96874 1.23346 1.04912 1.02566 0.95570 1.21679 0.98656 0.93983 0.84008 1.86442 1.82639 1.52606 1.16282 1.20146 0.92909 0.95706 0.97560 1.21071 0.98286 0.93433 1.04525 0.91042 0.91978 0.91006 0.86303 0.86110 0.86030 0.93647 0.95488 0.92552 0.87459 0.87652 0.89471 0.89579 0.92534 0.92418 0.76951 0.88537 0.92462 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.60 36.00 0.35 -0.94 16 2 C -0.09 -1.19 5.88 -104.65 -0.62 -1.81 16 3 C -0.12 -1.45 9.70 -39.55 -0.38 -1.84 16 4 C -0.12 -1.50 10.04 -39.61 -0.40 -1.90 16 5 C -0.12 -1.84 9.97 -39.39 -0.39 -2.23 16 6 C 0.14 2.48 3.90 -83.69 -0.33 2.16 16 7 N -0.55 -11.29 1.66 -114.73 -0.19 -11.49 16 8 C 0.22 5.32 4.22 -5.19 -0.02 5.29 16 9 C -0.54 -14.76 9.30 -34.44 -0.32 -15.08 16 10 H 0.09 2.65 4.57 -52.49 -0.24 2.41 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 13 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 17 C 0.53 10.90 7.00 -10.98 -0.08 10.83 16 18 O -0.51 -12.42 15.44 5.55 0.09 -12.33 16 19 C -0.12 -1.86 5.23 36.01 0.19 -1.67 16 20 S -0.17 -2.55 20.87 -107.50 -2.24 -4.79 16 21 C -0.12 -1.32 6.31 37.16 0.23 -1.08 16 22 C 0.10 0.94 7.05 37.16 0.26 1.20 16 23 O -0.57 -5.35 13.66 -35.23 -0.48 -5.83 16 24 C -0.06 -1.03 5.90 -104.43 -0.62 -1.64 16 25 C -0.12 -2.09 7.71 36.01 0.28 -1.81 16 26 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.07 0.79 5.94 -51.93 -0.31 0.48 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.05 1.18 6.48 -51.93 -0.34 0.84 16 33 H 0.03 0.64 7.48 -51.93 -0.39 0.25 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 36 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.38 1.70 9.12 45.56 0.42 2.11 16 42 H 0.10 2.01 7.03 -51.93 -0.37 1.64 16 43 H 0.06 0.84 5.94 -51.93 -0.31 0.53 16 44 H 0.07 1.41 6.04 -51.93 -0.31 1.10 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -33.53 371.17 -8.73 -42.25 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.65 Total: 4.41 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.94 Total: -8.46 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.58 Total: -37.52 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.40 Total: -18.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.24 Total: -4.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.53 -8.73 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603311221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.101 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds