Wall clock time and date at job start Tue Mar 31 2020 14:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38306 * 119.96744 * 2 1 4 4 C 1.38256 * 120.14154 * 180.28514 * 3 2 1 5 5 C 1.38138 * 120.06848 * 359.44074 * 4 3 2 6 6 C 1.38846 * 119.93009 * 0.28530 * 5 4 3 7 7 N 1.39926 * 120.07140 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00200 * 89.99386 * 7 6 5 9 9 C 1.50700 * 109.46828 * 90.00362 * 8 7 6 10 10 H 1.08001 * 120.00282 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99646 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99804 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00472 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46952 * 89.99599 * 13 11 9 15 15 H 1.48492 * 109.47096 * 210.00095 * 13 11 9 16 16 H 1.48503 * 109.46512 * 330.00147 * 13 11 9 17 17 C 1.34776 * 119.99638 * 269.99841 * 7 6 5 18 18 O 1.21291 * 119.99834 * 179.97438 * 17 7 6 19 19 C 1.50703 * 120.00127 * 359.97438 * 17 7 6 20 20 S 1.81404 * 109.47029 * 180.02562 * 19 17 7 21 21 C 1.81394 * 102.99827 * 179.97438 * 20 19 17 22 22 C 1.52996 * 109.47130 * 180.02562 * 21 20 19 23 23 O 1.42906 * 109.47516 * 180.02562 * 22 21 20 24 24 C 1.38091 * 119.96189 * 179.73254 * 2 1 3 25 25 C 1.50705 * 120.03685 * 0.02562 * 24 2 1 26 26 H 1.09009 * 109.46856 * 270.27563 * 1 2 3 27 27 H 1.09004 * 109.47426 * 30.26954 * 1 2 3 28 28 H 1.09001 * 109.47902 * 150.27595 * 1 2 3 29 29 H 1.08000 * 119.92474 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.96773 * 179.72706 * 4 3 2 31 31 H 1.08000 * 120.03436 * 180.30254 * 5 4 3 32 32 H 1.09004 * 109.47143 * 209.99815 * 8 7 6 33 33 H 1.08998 * 109.47343 * 330.00612 * 8 7 6 34 34 H 0.97006 * 119.99710 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.46947 * 300.00048 * 19 17 7 36 36 H 1.08994 * 109.46755 * 60.00386 * 19 17 7 37 37 H 1.09001 * 109.47712 * 300.00301 * 21 20 19 38 38 H 1.09004 * 109.47276 * 60.00088 * 21 20 19 39 39 H 1.09005 * 109.47265 * 299.99960 * 22 21 20 40 40 H 1.09004 * 109.47458 * 60.00156 * 22 21 20 41 41 H 0.96698 * 114.00400 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47043 * 269.98318 * 25 24 2 43 43 H 1.08994 * 109.46922 * 29.98617 * 25 24 2 44 44 H 1.09003 * 109.46744 * 149.98281 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2024 -0.0060 5 6 4.2761 0.0090 -0.0002 6 6 3.5856 -1.1955 0.0055 7 7 4.2874 -2.4060 0.0107 8 6 4.6554 -3.0339 1.2822 9 6 3.5524 -3.9619 1.7219 10 1 2.6658 -4.0725 1.1152 11 6 3.6747 -4.6689 2.8992 12 7 2.7119 -5.4783 3.2833 13 14 5.2079 -4.4770 3.9490 14 1 5.0065 -3.3736 4.9222 15 1 5.4675 -5.7422 4.6818 16 1 6.3683 -4.1626 3.0774 17 6 4.6249 -2.9943 -1.1540 18 8 5.2336 -4.0433 -1.1495 19 6 4.2459 -2.3486 -2.4619 20 16 4.8361 -3.3750 -3.8363 21 6 4.2934 -2.4495 -5.2989 22 6 4.7215 -3.1971 -6.5633 23 8 4.2945 -2.4677 -7.7157 24 6 2.1966 -1.1963 0.0056 25 6 1.4431 -2.5015 0.0111 26 1 -0.3633 0.0049 1.0278 27 1 -0.3634 0.8876 -0.5180 28 1 -0.3635 -0.8924 -0.5095 29 1 1.6561 2.1324 0.0004 30 1 4.1170 2.1396 -0.0104 31 1 5.3561 0.0130 0.0000 32 1 5.5776 -3.6008 1.1540 33 1 4.8047 -2.2632 2.0383 34 1 2.7978 -5.9755 4.1118 35 1 3.1616 -2.2535 -2.5194 36 1 4.7012 -1.3603 -2.5244 37 1 3.2079 -2.3517 -5.2851 38 1 4.7475 -1.4585 -5.2910 39 1 5.8070 -3.2951 -6.5775 40 1 4.2671 -4.1879 -6.5711 41 1 4.5328 -2.8840 -8.5553 42 1 1.2613 -2.8117 1.0401 43 1 0.4908 -2.3733 -0.5034 44 1 2.0323 -3.2633 -0.4994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603311221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:48 Heat of formation + Delta-G solvation = -74.273802 kcal Electronic energy + Delta-G solvation = -25452.843694 eV Core-core repulsion = 21881.855467 eV Total energy + Delta-G solvation = -3570.988227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65794 -39.83653 -37.93304 -36.77742 -34.85326 -34.22194 -32.18281 -31.98121 -31.49966 -29.59282 -28.05697 -27.19830 -24.59657 -23.95111 -23.43799 -21.75150 -20.23493 -19.17557 -18.73514 -18.29840 -17.77299 -17.18329 -16.78408 -16.61918 -16.54950 -15.98106 -15.93330 -15.33001 -15.15802 -15.00506 -14.75566 -14.33793 -14.13996 -13.87075 -13.84647 -13.63469 -13.51162 -13.47150 -13.36288 -13.09637 -12.75726 -12.65287 -12.58195 -12.53620 -12.20000 -12.10691 -11.82130 -11.44398 -11.11614 -11.03675 -11.00324 -10.80303 -9.72878 -9.52034 -9.45128 -8.79948 -8.30263 -6.33585 0.24150 0.31449 0.45433 1.28447 1.32663 1.41749 1.42228 1.49401 2.12066 2.30800 2.74778 3.02184 3.39238 3.44164 3.86857 3.89179 3.94705 3.99180 4.08559 4.12229 4.17343 4.28441 4.40546 4.44377 4.56691 4.68532 4.69251 4.75501 4.75732 4.79946 4.84879 4.91951 4.96065 4.99756 5.21134 5.38870 5.43302 5.47605 5.55807 5.61858 5.77265 6.05136 6.26443 6.54981 6.70947 6.82604 7.12813 7.30481 8.84470 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.004594 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.722267 B = 6092.874905 C = 7749.412279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.108 4.108 4 C -0.107 4.107 5 C -0.129 4.129 6 C 0.110 3.890 7 N -0.549 5.549 8 C 0.229 3.771 9 C -0.539 4.539 10 H 0.068 0.932 11 C 0.019 3.981 12 N -0.939 5.939 13 Si 0.931 3.069 14 H -0.258 1.258 15 H -0.282 1.282 16 H -0.259 1.259 17 C 0.525 3.475 18 O -0.561 6.561 19 C -0.098 4.098 20 S -0.217 6.217 21 C -0.098 4.098 22 C 0.099 3.901 23 O -0.585 6.585 24 C -0.086 4.086 25 C -0.102 4.102 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.128 0.872 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.404 0.596 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 16.837 -15.530 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.149 4.149 6 C 0.020 3.980 7 N -0.276 5.276 8 C 0.108 3.892 9 C -0.577 4.577 10 H 0.086 0.914 11 C -0.179 4.179 12 N -0.580 5.580 13 Si 0.755 3.245 14 H -0.183 1.183 15 H -0.208 1.208 16 H -0.183 1.183 17 C 0.314 3.686 18 O -0.440 6.440 19 C -0.248 4.248 20 S 0.008 5.992 21 C -0.246 4.246 22 C 0.020 3.980 23 O -0.395 6.395 24 C -0.087 4.087 25 C -0.158 4.158 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.146 0.854 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.030 15.587 -14.887 21.554 hybrid contribution 0.138 -0.177 0.725 0.759 sum 0.168 15.410 -14.162 20.929 Atomic orbital electron populations 1.20898 0.89525 1.03847 1.02901 1.19973 0.97368 0.91658 0.99702 1.21427 0.94329 0.97864 0.98951 1.21309 0.94430 0.97618 0.99168 1.21474 1.00543 0.91496 1.01357 1.17780 0.90483 0.85184 1.04569 1.45241 1.54711 1.21607 1.06083 1.19438 0.95740 0.92967 0.81024 1.21873 1.04707 1.24237 1.06896 0.91392 1.25636 0.99056 0.94391 0.98828 1.70014 1.34786 1.29100 1.24087 0.85960 0.80741 0.78399 0.79449 1.18283 1.20765 1.18302 1.20144 0.78990 0.84323 0.85189 1.90697 1.42271 1.23758 1.87243 1.23327 1.06181 1.02787 0.92546 1.87491 1.76742 1.35864 0.99103 1.23316 1.05029 1.02376 0.93912 1.21584 0.99043 0.93734 0.83673 1.86378 1.82823 1.53079 1.17182 1.20104 0.92746 0.95918 0.99954 1.20789 0.99454 0.93819 1.01736 0.91047 0.88925 0.91462 0.82473 0.82357 0.85358 0.95730 0.94436 0.92468 0.86588 0.85087 0.89105 0.88507 0.91892 0.92296 0.74466 0.92686 0.89725 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.60 71.23 0.68 -1.57 16 2 C -0.09 -2.15 5.88 -19.88 -0.12 -2.26 16 3 C -0.11 -2.11 9.70 22.29 0.22 -1.89 16 4 C -0.11 -2.14 10.04 22.25 0.22 -1.92 16 5 C -0.13 -3.49 9.97 22.39 0.22 -3.27 16 6 C 0.11 3.78 3.90 38.15 0.15 3.93 16 7 N -0.55 -23.26 1.66 -635.30 -1.06 -24.31 16 8 C 0.23 11.48 4.22 85.63 0.36 11.85 16 9 C -0.54 -31.19 9.30 25.60 0.24 -30.95 16 10 H 0.07 4.20 4.57 -2.91 -0.01 4.18 16 11 C 0.02 1.13 5.47 84.65 0.46 1.59 16 12 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 13 Si 0.93 45.07 27.47 68.60 1.88 46.96 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 16 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 17 C 0.53 22.32 7.00 87.66 0.61 22.93 16 18 O -0.56 -28.98 15.44 -3.06 -0.05 -29.03 16 19 C -0.10 -3.05 5.23 71.24 0.37 -2.68 16 20 S -0.22 -6.61 20.87 -56.49 -1.18 -7.79 16 21 C -0.10 -2.08 6.31 71.98 0.45 -1.62 16 22 C 0.10 1.77 7.05 71.98 0.51 2.28 16 23 O -0.58 -9.54 13.66 -148.98 -2.04 -11.58 16 24 C -0.09 -2.82 5.90 -19.74 -0.12 -2.94 16 25 C -0.10 -3.83 7.71 71.24 0.55 -3.28 16 26 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.09 1.25 8.09 -2.38 -0.02 1.23 16 28 H 0.07 1.36 5.94 -2.39 -0.01 1.35 16 29 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.02 1.33 6.48 -2.39 -0.02 1.32 16 33 H 0.04 1.79 7.48 -2.39 -0.02 1.77 16 34 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 35 H 0.12 3.40 8.10 -2.39 -0.02 3.38 16 36 H 0.13 3.36 8.10 -2.39 -0.02 3.34 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.40 2.63 9.12 -74.06 -0.68 1.95 16 42 H 0.05 2.48 7.03 -2.39 -0.02 2.47 16 43 H 0.08 2.56 5.94 -2.39 -0.01 2.55 16 44 H 0.04 1.58 6.04 -2.39 -0.01 1.57 16 Total: -1.00 -78.12 371.17 2.97 -75.15 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.29 Total: 18.94 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.82 Total: -9.81 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -0.76 Total: -82.84 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -2.08 Total: -40.61 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -1.18 Total: -7.79 kcal Total: -78.12 2.97 -75.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603311221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.872 kcal (2) G-P(sol) polarization free energy of solvation -78.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds