Wall clock time and date at job start Tue Mar 31 2020 13:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.02705 * 2 1 4 4 C 1.38102 * 119.92790 * 180.02562 * 3 2 1 5 5 C 1.38500 * 120.21999 * 0.02562 * 4 3 2 6 6 C 1.38222 * 119.84520 * 359.97438 * 5 4 3 7 7 C 1.38098 * 120.03241 * 180.02562 * 2 1 3 8 8 C 1.51375 * 109.75528 * 179.97438 * 6 5 4 9 9 H 1.09004 * 110.30042 * 101.83126 * 8 6 5 10 10 N 1.46496 * 110.30286 * 223.88378 * 8 6 5 11 11 S 1.65599 * 120.00146 * 215.00163 * 10 8 6 12 12 O 1.42105 * 104.27655 * 308.92954 * 11 10 8 13 13 O 1.42101 * 104.27764 * 181.07391 * 11 10 8 14 14 C 1.81395 * 104.44748 * 65.00260 * 11 10 8 15 15 C 1.52999 * 109.46986 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47213 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.47044 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00265 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99848 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99731 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47314 * 89.99401 * 21 19 17 23 23 H 1.48505 * 109.47193 * 209.99658 * 21 19 17 24 24 H 1.48504 * 109.47052 * 329.99221 * 21 19 17 25 25 C 1.54344 * 105.16951 * 342.81062 * 8 6 5 26 26 C 1.51371 * 130.39132 * 179.97438 * 5 4 3 27 27 H 1.09010 * 109.46805 * 269.97781 * 1 2 3 28 28 H 1.08996 * 109.47580 * 29.97657 * 1 2 3 29 29 H 1.08998 * 109.47398 * 149.98126 * 1 2 3 30 30 H 1.07995 * 120.03738 * 0.04575 * 3 2 1 31 31 H 1.08002 * 119.89198 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.89431 * 359.97438 * 7 2 1 33 33 H 0.97001 * 119.99851 * 35.00689 * 10 8 6 34 34 H 1.09003 * 109.47393 * 299.99669 * 14 11 10 35 35 H 1.08994 * 109.47678 * 60.00285 * 14 11 10 36 36 H 1.09004 * 109.47080 * 299.99725 * 15 14 11 37 37 H 1.09005 * 109.47285 * 59.99790 * 15 14 11 38 38 H 1.09003 * 109.47218 * 299.99466 * 16 15 14 39 39 H 1.08995 * 109.47220 * 59.99596 * 16 15 14 40 40 H 0.97002 * 119.99124 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.81731 * 144.57054 * 25 8 6 42 42 H 1.09000 * 110.82320 * 268.11726 * 25 8 6 43 43 H 1.08993 * 110.30318 * 316.10547 * 26 5 4 44 44 H 1.08994 * 110.29939 * 78.17093 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1970 0.0000 4 6 3.5799 1.1946 -0.0005 5 6 4.2749 -0.0034 -0.0016 6 6 3.5831 -1.2000 -0.0016 7 6 2.1982 -1.1956 -0.0005 8 6 4.5603 -2.3560 -0.0035 9 1 4.6456 -2.7808 0.9967 10 7 4.1312 -3.3829 -0.9561 11 16 4.3898 -4.9837 -0.6204 12 8 5.7687 -5.0529 -0.2840 13 8 3.8775 -5.6672 -1.7561 14 6 3.3616 -5.3122 0.8375 15 6 3.5164 -6.7771 1.2511 16 6 2.6487 -7.0544 2.4804 17 6 2.8016 -8.4972 2.8881 18 1 3.4522 -9.1511 2.3264 19 6 2.1100 -8.9827 3.9776 20 7 1.3174 -8.1865 4.6614 21 14 2.2990 -10.7711 4.4826 22 1 3.4185 -10.8967 5.4502 23 1 1.0414 -11.2420 5.1166 24 1 2.5873 -11.5965 3.2822 25 6 5.9074 -1.7454 -0.4449 26 6 5.7643 -0.2733 -0.0029 27 1 -0.3633 -0.0004 1.0278 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6599 2.1329 0.0007 31 1 4.1197 2.1300 -0.0001 32 1 1.6570 -2.1302 -0.0005 33 1 3.6956 -3.1251 -1.7836 34 1 3.6781 -4.6681 1.6580 35 1 2.3175 -5.1101 0.5989 36 1 3.2001 -7.4216 0.4308 37 1 4.5606 -6.9789 1.4899 38 1 2.9645 -6.4100 3.3009 39 1 1.6046 -6.8527 2.2411 40 1 0.8312 -8.5281 5.4281 41 1 6.7383 -2.2258 0.0718 42 1 6.0291 -1.8158 -1.5258 43 1 6.2673 0.3844 -0.7117 44 1 6.1745 -0.1349 0.9974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609465447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:01 Heat of formation + Delta-G solvation = -72.974307 kcal Electronic energy + Delta-G solvation = -24873.485163 eV Core-core repulsion = 21302.553286 eV Total energy + Delta-G solvation = -3570.931877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.53361 -37.11919 -36.72222 -35.74847 -34.68387 -33.94388 -32.19754 -31.39382 -30.54910 -27.82610 -27.07229 -25.74397 -23.74452 -22.72855 -21.12129 -20.72982 -20.52692 -19.24978 -17.65057 -16.93850 -16.54200 -16.03875 -15.67696 -15.59758 -15.26205 -15.08887 -14.48914 -14.33545 -13.99381 -13.87127 -13.57257 -13.23195 -12.75225 -12.61801 -12.52218 -12.31543 -12.28341 -12.04182 -11.95446 -11.85312 -11.78798 -11.65849 -11.34337 -11.26188 -11.16378 -10.94267 -10.89401 -10.83135 -10.43709 -9.96169 -9.82234 -9.34794 -9.10714 -8.99656 -8.61293 -8.41387 -6.06373 -4.09415 0.43458 1.08097 1.16170 2.82911 3.30075 3.36200 3.40312 3.48655 3.91117 4.06363 4.26521 4.39710 4.42082 4.64284 4.72604 4.79180 4.87308 4.88421 5.00295 5.14655 5.19557 5.22145 5.25828 5.30296 5.39557 5.42814 5.52838 5.60274 5.65240 5.81224 5.86263 5.88600 5.94723 6.03502 6.20922 6.25243 6.36377 6.39566 6.43528 6.77042 6.85504 6.90097 7.56108 7.65904 7.91645 8.32050 8.96817 9.55351 11.04837 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003069 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.254990 B = 9120.109131 C =10212.193328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.115 4.115 4 C -0.107 4.107 5 C -0.093 4.093 6 C -0.104 4.104 7 C -0.093 4.093 8 C 0.194 3.806 9 H 0.102 0.898 10 N -1.116 6.116 11 S 2.597 3.403 12 O -0.959 6.959 13 O -0.963 6.963 14 C -0.610 4.610 15 C -0.105 4.105 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.132 4.132 26 C -0.083 4.083 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.416 0.584 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 21.804 -10.493 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.093 4.093 6 C -0.106 4.106 7 C -0.111 4.111 8 C 0.086 3.914 9 H 0.120 0.880 10 N -0.872 5.872 11 S 2.693 3.307 12 O -0.948 6.948 13 O -0.953 6.953 14 C -0.742 4.742 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.171 4.171 26 C -0.120 4.120 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.250 0.750 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.970 21.166 -10.698 24.045 hybrid contribution -0.758 -0.488 0.602 1.083 sum 3.212 20.678 -10.096 23.234 Atomic orbital electron populations 1.20797 0.90917 1.02847 1.02602 1.19829 0.96179 0.92854 1.00027 1.20948 0.93846 0.97574 1.00905 1.20582 0.93868 0.96948 1.01117 1.20545 0.96032 0.93107 0.99648 1.20602 0.93592 0.95020 1.01395 1.20557 0.92654 0.98005 0.99883 1.20256 0.91885 0.86613 0.92609 0.88034 1.55838 1.76960 1.24042 1.30335 1.05425 0.76013 0.72402 0.76855 1.93577 1.30695 1.85027 1.85549 1.93581 1.81804 1.71954 1.47966 1.30569 1.15511 1.08958 1.19156 1.21500 1.02687 0.87854 1.02440 1.19061 0.94333 0.96897 0.90458 1.21255 1.26821 0.95590 1.12803 0.92364 1.25019 0.95087 0.97924 0.96343 1.69961 1.28668 1.35462 1.19323 0.86555 0.77517 0.84917 0.78820 1.20558 1.21174 1.19733 1.22822 0.97111 0.94370 1.02795 1.21082 0.91726 0.96825 1.02403 0.90960 0.91597 0.91318 0.85937 0.86190 0.85836 0.74999 0.85607 0.85280 0.91568 0.91534 0.96139 0.96124 0.92903 0.89124 0.89942 0.90462 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.83 5.88 -104.67 -0.62 -1.45 16 3 C -0.11 -0.98 9.70 -39.63 -0.38 -1.37 16 4 C -0.11 -0.92 10.04 -39.53 -0.40 -1.32 16 5 C -0.09 -0.88 6.14 -104.20 -0.64 -1.52 16 6 C -0.10 -1.08 5.73 -104.20 -0.60 -1.67 16 7 C -0.09 -0.95 9.66 -39.54 -0.38 -1.33 16 8 C 0.19 2.01 3.30 -68.05 -0.22 1.79 16 9 H 0.10 1.01 7.25 -51.93 -0.38 0.63 16 10 N -1.12 -12.21 5.37 -4.99 -0.03 -12.24 16 11 S 2.60 37.62 5.38 -107.50 -0.58 37.04 16 12 O -0.96 -16.32 17.82 -57.54 -1.03 -17.35 16 13 O -0.96 -16.84 18.08 -57.54 -1.04 -17.88 16 14 C -0.61 -9.29 5.98 37.16 0.22 -9.07 16 15 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 C -0.13 -1.23 6.77 -25.31 -0.17 -1.40 16 26 C -0.08 -0.66 6.77 -26.84 -0.18 -0.84 16 27 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.42 3.94 8.82 -34.47 -0.30 3.64 16 34 H 0.13 1.70 7.50 -51.92 -0.39 1.31 16 35 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -34.93 376.79 -11.92 -46.85 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.94 Total: 1.03 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -3.70 Total: -33.87 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.71 Total: -38.04 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.07 Total: -35.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 37.62 SS G_CDS: -0.58 Total: 37.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.93 -11.92 -46.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609465447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.127 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds