Wall clock time and date at job start Tue Mar 31 2020 13:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38255 * 120.03255 * 2 1 4 4 C 1.38109 * 119.93310 * 180.02562 * 3 2 1 5 5 C 1.38492 * 120.21557 * 0.02562 * 4 3 2 6 6 C 1.38222 * 119.85088 * 359.97438 * 5 4 3 7 7 C 1.38100 * 120.03303 * 180.02562 * 2 1 3 8 8 C 1.51373 * 109.75485 * 180.02562 * 6 5 4 9 9 H 1.08995 * 110.30245 * 223.79401 * 8 6 5 10 10 N 1.46506 * 110.30101 * 101.74226 * 8 6 5 11 11 S 1.65597 * 119.99791 * 146.37458 * 10 8 6 12 12 O 1.42101 * 104.27612 * 181.07220 * 11 10 8 13 13 O 1.42101 * 104.27805 * 308.92463 * 11 10 8 14 14 C 1.81397 * 104.45432 * 64.99519 * 11 10 8 15 15 C 1.52999 * 109.47238 * 179.97438 * 14 11 10 16 16 C 1.53004 * 109.46697 * 180.02562 * 15 14 11 17 17 C 1.50700 * 109.46889 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99751 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00174 * 179.97438 * 17 16 15 20 20 N 1.31507 * 119.99945 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00094 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47044 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46932 * 120.00328 * 21 19 17 24 24 H 1.48498 * 109.47306 * 240.00413 * 21 19 17 25 25 C 1.54339 * 105.25696 * 342.77019 * 8 6 5 26 26 C 1.51370 * 130.38714 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.46881 * 90.00405 * 1 2 3 28 28 H 1.08995 * 109.47258 * 210.00459 * 1 2 3 29 29 H 1.09009 * 109.47206 * 330.00701 * 1 2 3 30 30 H 1.08003 * 120.03407 * 359.97277 * 3 2 1 31 31 H 1.07996 * 119.89195 * 179.97438 * 4 3 2 32 32 H 1.08002 * 119.88923 * 0.02562 * 7 2 1 33 33 H 0.96995 * 120.00050 * 326.09542 * 10 8 6 34 34 H 1.09000 * 109.46873 * 300.00475 * 14 11 10 35 35 H 1.09004 * 109.46684 * 59.99917 * 14 11 10 36 36 H 1.09002 * 109.47112 * 300.00009 * 15 14 11 37 37 H 1.08998 * 109.46926 * 60.00162 * 15 14 11 38 38 H 1.09002 * 109.47138 * 299.99737 * 16 15 14 39 39 H 1.08998 * 109.47509 * 60.00264 * 16 15 14 40 40 H 0.97006 * 120.00532 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.82319 * 144.62071 * 25 8 6 42 42 H 1.09003 * 110.82033 * 268.16252 * 25 8 6 43 43 H 1.08996 * 110.30404 * 316.10109 * 26 5 4 44 44 H 1.08998 * 110.30170 * 78.15708 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1969 0.0000 4 6 3.5800 1.1945 -0.0005 5 6 4.2749 -0.0034 -0.0016 6 6 3.5831 -1.2001 -0.0016 7 6 2.1982 -1.1956 -0.0005 8 6 4.5604 -2.3560 -0.0022 9 1 4.2408 -3.1211 -0.7097 10 7 4.6755 -2.9251 1.3429 11 16 4.9341 -4.5494 1.5354 12 8 4.9642 -4.7349 2.9439 13 8 3.9301 -5.1611 0.7373 14 6 6.5767 -4.8342 0.8205 15 6 6.9347 -6.3170 0.9398 16 6 8.3205 -6.5570 0.3373 17 6 8.6734 -8.0173 0.4553 18 1 7.9786 -8.7055 0.9138 19 6 9.8829 -8.4751 -0.0229 20 7 10.7287 -7.6374 -0.5816 21 14 10.3200 -10.2854 0.1228 22 1 9.2066 -11.0118 0.7846 23 1 10.5435 -10.8512 -1.2319 24 1 11.5571 -10.4325 0.9310 25 6 5.9085 -1.7479 -0.4437 26 6 5.7643 -0.2733 -0.0018 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5138 30 1 1.6600 2.1329 -0.0004 31 1 4.1198 2.1299 -0.0010 32 1 1.6569 -2.1302 -0.0014 33 1 4.6044 -2.3498 2.1206 34 1 6.5707 -4.5448 -0.2304 35 1 7.3149 -4.2382 1.3573 36 1 6.9408 -6.6058 1.9908 37 1 6.1966 -6.9132 0.4033 38 1 8.3148 -6.2680 -0.7137 39 1 9.0584 -5.9608 0.8741 40 1 11.5798 -7.9593 -0.9177 41 1 6.7386 -2.2294 0.0733 42 1 6.0303 -1.8192 -1.5245 43 1 6.2678 0.3846 -0.7101 44 1 6.1739 -0.1352 0.9988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609465448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:04 Heat of formation + Delta-G solvation = -72.908263 kcal Electronic energy + Delta-G solvation = -24767.606557 eV Core-core repulsion = 21196.677544 eV Total energy + Delta-G solvation = -3570.929013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56990 -37.16095 -36.79526 -35.76067 -34.68820 -33.66991 -32.20652 -31.40261 -30.61652 -27.85358 -27.21968 -25.77875 -23.76985 -22.79697 -21.15516 -20.58383 -20.51454 -19.28143 -17.63014 -16.98577 -16.52411 -16.02961 -15.72941 -15.61725 -15.32872 -14.90401 -14.50697 -14.48122 -14.06685 -13.95256 -13.52869 -13.40162 -12.68037 -12.66202 -12.46633 -12.30961 -12.19980 -12.06291 -11.95192 -11.83291 -11.80032 -11.70387 -11.36733 -11.23858 -11.19427 -10.94611 -10.92931 -10.82487 -10.42043 -9.96521 -9.77152 -9.34887 -9.13144 -9.03337 -8.65875 -8.42013 -6.06773 -4.09588 0.41388 1.05737 1.13972 2.83720 3.28842 3.36476 3.41415 3.49508 3.91087 4.05027 4.22807 4.39570 4.41906 4.60818 4.75163 4.76509 4.81483 4.93185 5.00743 5.15117 5.18082 5.20287 5.25210 5.30082 5.31591 5.41621 5.51182 5.59650 5.63637 5.70441 5.84691 5.86830 5.92336 6.00646 6.17218 6.25566 6.33228 6.39456 6.43638 6.74548 6.85564 6.90733 7.56075 7.65852 7.91438 8.32013 8.96865 9.55255 11.04464 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002600 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.228835 B =10765.292680 C =11378.917217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.110 4.110 5 C -0.088 4.088 6 C -0.100 4.100 7 C -0.089 4.089 8 C 0.187 3.813 9 H 0.104 0.896 10 N -1.113 6.113 11 S 2.597 3.403 12 O -0.962 6.962 13 O -0.962 6.962 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.146 4.146 26 C -0.081 4.081 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.415 0.585 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.694 20.693 -0.094 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.089 4.089 6 C -0.102 4.102 7 C -0.107 4.107 8 C 0.079 3.921 9 H 0.122 0.878 10 N -0.868 5.868 11 S 2.694 3.306 12 O -0.953 6.953 13 O -0.951 6.951 14 C -0.741 4.741 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.186 4.186 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.249 0.751 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.154 19.962 0.082 25.679 hybrid contribution 0.931 -0.313 0.022 0.982 sum -15.223 19.649 0.104 24.856 Atomic orbital electron populations 1.20778 0.90998 1.02839 1.02387 1.19815 0.96124 0.92855 1.00545 1.20953 0.93862 0.97532 1.00687 1.20592 0.93863 0.97010 1.01290 1.20643 0.96092 0.93148 0.98994 1.20472 0.93440 0.94792 1.01494 1.20621 0.92804 0.97971 0.99334 1.20166 0.93253 0.94755 0.83897 0.87794 1.55796 1.89766 1.28499 1.12781 1.05404 0.77958 0.72529 0.74742 1.93581 1.87957 1.83990 1.29758 1.93568 1.55071 1.74742 1.71761 1.30616 1.21363 1.08894 1.13236 1.21504 1.03169 0.87531 1.02310 1.19066 0.88588 0.97019 0.96098 1.21293 1.02259 0.93769 1.39026 0.92329 1.25018 0.96381 0.97896 0.95114 1.69962 1.09054 1.34448 1.39970 0.86504 0.78435 0.85116 0.77796 1.19605 1.20945 1.20949 1.23019 0.97312 0.95644 1.02580 1.21089 0.91572 0.96745 1.02404 0.91140 0.91408 0.91578 0.85941 0.86164 0.85819 0.75124 0.85368 0.85192 0.91589 0.91561 0.96084 0.96108 0.92957 0.89099 0.89305 0.90339 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.09 -0.83 5.88 -104.67 -0.62 -1.45 16 3 C -0.11 -0.92 9.70 -39.62 -0.38 -1.31 16 4 C -0.11 -0.93 10.04 -39.54 -0.40 -1.32 16 5 C -0.09 -0.82 6.14 -104.21 -0.64 -1.46 16 6 C -0.10 -1.04 5.70 -104.20 -0.59 -1.64 16 7 C -0.09 -0.91 9.70 -39.54 -0.38 -1.30 16 8 C 0.19 1.93 3.42 -68.05 -0.23 1.70 16 9 H 0.10 1.10 7.54 -51.93 -0.39 0.71 16 10 N -1.11 -12.34 5.40 -4.99 -0.03 -12.36 16 11 S 2.60 37.91 5.44 -107.50 -0.58 37.33 16 12 O -0.96 -16.98 18.08 -57.54 -1.04 -18.02 16 13 O -0.96 -16.78 17.42 -57.54 -1.00 -17.78 16 14 C -0.61 -9.05 5.30 37.16 0.20 -8.86 16 15 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 16 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.15 -1.27 6.72 -25.18 -0.17 -1.44 16 26 C -0.08 -0.65 6.78 -26.71 -0.18 -0.83 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.36 8.09 -51.92 -0.42 -0.06 16 30 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.42 4.05 8.81 -34.47 -0.30 3.75 16 34 H 0.13 1.66 7.93 -51.92 -0.41 1.25 16 35 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.09 0.76 7.15 -51.93 -0.37 0.39 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -35.03 375.65 -11.94 -46.96 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.93 Total: 0.77 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: -3.73 Total: -33.40 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.71 Total: -38.02 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -2.04 Total: -35.80 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 37.91 SS G_CDS: -0.58 Total: 37.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.03 -11.94 -46.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609465448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.945 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds