Wall clock time and date at job start Tue Mar 31 2020 14:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 112.94711 * 2 1 4 4 C 1.53952 * 113.74323 * 228.26697 * 2 1 3 5 5 N 1.47815 * 86.15840 * 269.16826 * 4 2 1 6 6 S 1.65600 * 134.58136 * 155.41784 * 5 4 2 7 7 O 1.42100 * 104.27597 * 34.43455 * 6 5 4 8 8 O 1.42098 * 104.27571 * 162.28857 * 6 5 4 9 9 C 1.81394 * 104.45200 * 278.36139 * 6 5 4 10 10 C 1.53004 * 109.47290 * 170.64335 * 9 6 5 11 11 C 1.50701 * 109.47328 * 179.97438 * 10 9 6 12 12 H 1.07992 * 119.99701 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99455 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00170 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47099 * 90.00186 * 15 13 11 17 17 H 1.48502 * 109.46851 * 209.99968 * 15 13 11 18 18 H 1.48499 * 109.47305 * 330.00082 * 15 13 11 19 19 C 1.47580 * 90.92595 * 335.45783 * 5 4 2 20 20 H 1.09000 * 113.76328 * 270.18505 * 19 5 4 21 21 C 1.50696 * 113.77142 * 138.89836 * 19 5 4 22 22 C 1.38241 * 119.99927 * 325.51198 * 21 19 5 23 23 C 1.38236 * 119.99779 * 180.21677 * 22 21 19 24 24 C 1.38238 * 120.00151 * 359.52378 * 23 22 21 25 25 C 1.38237 * 119.99869 * 0.28184 * 24 23 22 26 26 C 1.38229 * 120.00096 * 145.29592 * 21 19 5 27 27 H 1.08990 * 109.47024 * 288.24677 * 1 2 3 28 28 H 1.08996 * 109.46769 * 48.25160 * 1 2 3 29 29 H 1.08998 * 109.46871 * 168.24949 * 1 2 3 30 30 H 1.08997 * 109.47478 * 191.59411 * 3 2 1 31 31 H 1.09000 * 109.46994 * 311.59208 * 3 2 1 32 32 H 1.09003 * 109.47170 * 71.58899 * 3 2 1 33 33 H 1.08994 * 113.76710 * 23.55826 * 4 2 1 34 34 H 1.08994 * 113.77271 * 154.84910 * 4 2 1 35 35 H 1.09001 * 109.47459 * 290.64442 * 9 6 5 36 36 H 1.09004 * 109.47069 * 50.64850 * 9 6 5 37 37 H 1.09001 * 109.46956 * 300.00414 * 10 9 6 38 38 H 1.09004 * 109.46645 * 60.00254 * 10 9 6 39 39 H 0.97008 * 119.99911 * 179.97438 * 14 13 11 40 40 H 1.08001 * 119.99985 * 0.02562 * 22 21 19 41 41 H 1.08001 * 119.99742 * 179.80786 * 23 22 21 42 42 H 1.07996 * 120.00274 * 180.25553 * 24 23 22 43 43 H 1.07997 * 119.99783 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.00067 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1265 1.4089 0.0000 4 6 2.1499 -0.9381 -1.0516 5 7 2.1296 -1.9725 0.0041 6 16 2.0964 -3.6281 0.0087 7 8 2.8674 -3.9972 -1.1265 8 8 2.5089 -3.9832 1.3213 9 6 0.3497 -4.0466 -0.2447 10 6 0.2163 -5.5505 -0.4927 11 6 -1.2349 -5.8983 -0.7026 12 1 -1.9869 -5.1242 -0.6627 13 6 -1.6026 -7.2050 -0.9445 14 7 -2.8691 -7.5085 -1.1272 15 14 -0.3021 -8.5442 -1.0114 16 1 -0.1060 -9.1120 0.3467 17 1 -0.7440 -9.6175 -1.9376 18 1 0.9776 -7.9677 -1.4963 19 6 2.1498 -0.9354 1.0539 20 1 3.1533 -0.6440 1.3642 21 6 1.2372 -1.2300 2.2164 22 6 0.0361 -1.8808 2.0045 23 6 -0.8031 -2.1471 3.0703 24 6 -0.4368 -1.7713 4.3492 25 6 0.7661 -1.1241 4.5615 26 6 1.6031 -0.8535 3.4951 27 1 -0.3633 0.3217 0.9759 28 1 -0.3633 0.6843 -0.7667 29 1 -0.3633 -1.0061 -0.2093 30 1 3.1952 1.3511 -0.2065 31 1 1.6400 2.0094 -0.7686 32 1 1.9693 1.8700 0.9751 33 1 1.4898 -1.1533 -1.8918 34 1 3.1533 -0.6474 -1.3627 35 1 -0.2220 -3.7725 0.6419 36 1 -0.0332 -3.5009 -1.1071 37 1 0.7880 -5.8247 -1.3793 38 1 0.5993 -6.0963 0.3697 39 1 -3.1278 -8.4277 -1.2978 40 1 -0.2480 -2.1785 1.0060 41 1 -1.7428 -2.6528 2.9043 42 1 -1.0905 -1.9830 5.1823 43 1 1.0521 -0.8302 5.5606 44 1 2.5429 -0.3478 3.6610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609541925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:49 Heat of formation + Delta-G solvation = -10.767487 kcal Electronic energy + Delta-G solvation = -26564.549179 eV Core-core repulsion = 22996.314792 eV Total energy + Delta-G solvation = -3568.234387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82468 -38.35717 -36.63289 -35.51270 -34.00375 -32.15982 -31.64251 -31.45539 -30.89920 -27.64328 -26.25576 -25.87339 -25.33492 -22.48609 -21.66213 -21.17969 -18.96208 -18.39664 -17.61678 -17.02667 -16.53303 -16.14422 -15.86016 -15.18891 -14.91127 -14.77814 -14.60944 -14.26263 -13.97104 -13.76893 -13.33110 -13.11398 -12.80295 -12.76884 -12.63461 -12.48516 -12.14845 -12.06118 -11.88664 -11.69484 -11.59844 -11.50286 -11.31710 -11.25771 -11.18267 -10.86089 -10.59402 -10.45704 -10.36119 -10.08567 -9.72942 -9.43515 -9.00550 -8.83995 -8.66818 -8.63079 -6.17437 -4.18421 0.59710 1.31341 1.44360 2.89383 3.26079 3.33443 3.38709 3.76263 4.07217 4.19925 4.35607 4.41523 4.50321 4.59431 4.77777 4.91475 4.96048 5.04150 5.12123 5.15095 5.30407 5.35793 5.40890 5.45497 5.48937 5.53180 5.57275 5.60228 5.72867 5.79415 5.84794 5.94622 5.97635 6.00024 6.06499 6.23158 6.26592 6.38629 6.50005 6.57408 6.69727 6.79656 6.93868 7.01813 7.53820 8.35674 8.83250 9.42618 10.94866 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.004824 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.581877 B = 5802.517278 C = 6577.297942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 C -0.137 4.137 4 C 0.132 3.868 5 N -1.037 6.037 6 S 2.598 3.402 7 O -0.964 6.964 8 O -0.955 6.955 9 C -0.591 4.591 10 C -0.004 4.004 11 C -0.517 4.517 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.895 5.895 15 Si 0.866 3.134 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.261 1.261 19 C 0.206 3.794 20 H 0.100 0.900 21 C -0.090 4.090 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.103 4.103 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 19.999 6.226 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.195 4.195 4 C 0.007 3.993 5 N -0.874 5.874 6 S 2.699 3.301 7 O -0.954 6.954 8 O -0.946 6.946 9 C -0.724 4.724 10 C -0.044 4.044 11 C -0.556 4.556 12 H 0.096 0.904 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.692 3.308 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 C 0.100 3.900 20 H 0.117 0.883 21 C -0.091 4.091 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.435 19.040 6.280 21.752 hybrid contribution -0.073 -0.840 -0.090 0.848 sum 8.362 18.200 6.191 20.964 Atomic orbital electron populations 1.21834 0.92196 1.02600 1.02521 1.22584 0.96903 0.94296 0.95171 1.21737 1.00649 0.94738 1.02391 1.22879 1.00826 0.84366 0.91257 1.60567 1.90635 1.20887 1.15298 1.05393 0.79021 0.71448 0.74282 1.93538 1.67844 1.80798 1.53244 1.93553 1.81317 1.80901 1.38811 1.30613 1.21197 1.09419 1.11141 1.19396 1.01079 0.86357 0.97539 1.20818 0.89864 0.94887 1.50066 0.90369 1.24956 0.95290 0.98510 0.94189 1.69877 1.15646 1.19490 1.48306 0.86967 0.82819 0.82110 0.78866 1.19661 1.20682 1.18569 1.21195 0.97449 0.84906 0.86487 0.88272 1.19759 0.95427 0.99746 0.94217 1.21539 0.94127 0.98277 1.00119 1.21239 1.00063 0.99119 0.92664 1.21185 0.96822 0.98387 0.97052 1.21088 0.94712 0.99482 0.98631 1.20898 0.99373 1.00096 0.91801 0.91407 0.91962 0.91587 0.92139 0.91905 0.92009 0.89806 0.89631 0.85070 0.85655 0.94751 0.95746 0.92383 0.84929 0.85433 0.86083 0.86130 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.47 37.16 0.28 -0.98 16 2 C -0.09 -0.80 1.35 -153.57 -0.21 -1.01 16 3 C -0.14 -0.91 9.22 37.16 0.34 -0.57 16 4 C 0.13 1.39 8.08 -2.84 -0.02 1.37 16 5 N -1.04 -14.57 3.14 -111.68 -0.35 -14.92 16 6 S 2.60 48.80 5.29 -107.50 -0.57 48.24 16 7 O -0.96 -20.70 18.08 -57.54 -1.04 -21.74 16 8 O -0.96 -20.23 17.69 -57.54 -1.02 -21.25 16 9 C -0.59 -11.38 5.02 37.16 0.19 -11.20 16 10 C 0.00 -0.11 4.05 -27.88 -0.11 -0.22 16 11 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 12 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 15 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 19 C 0.21 2.40 3.94 -68.02 -0.27 2.13 16 20 H 0.10 1.02 8.06 -51.93 -0.42 0.60 16 21 C -0.09 -1.16 4.41 -104.63 -0.46 -1.62 16 22 C -0.12 -1.69 5.76 -39.58 -0.23 -1.92 16 23 C -0.11 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.10 -1.18 9.71 -39.58 -0.38 -1.57 16 27 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.70 5.88 -51.93 -0.31 0.39 16 30 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.09 0.77 7.96 -51.93 -0.41 0.36 16 35 H 0.13 2.37 5.34 -51.92 -0.28 2.10 16 36 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 37 H 0.03 0.84 7.20 -51.93 -0.37 0.47 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.13 1.83 2.66 -52.49 -0.14 1.69 16 41 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -35.21 359.41 -10.44 -45.65 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.48 Total: 1.57 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -2.50 Total: -33.75 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.42 Total: -41.16 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -2.06 Total: -42.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: 48.80 SS G_CDS: -0.57 Total: 48.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.21 -10.44 -45.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609541925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.883 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds