Wall clock time and date at job start Tue Mar 31 2020 13:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38164 * 119.84955 * 2 1 4 4 C 1.38264 * 120.16347 * 180.02562 * 3 2 1 5 5 C 1.38070 * 119.91413 * 0.09643 * 4 3 2 6 6 C 1.39034 * 120.02497 * 359.97438 * 5 4 3 7 7 C 1.38455 * 119.84636 * 179.97438 * 2 1 3 8 8 C 1.50870 * 118.88308 * 359.61482 * 7 2 1 9 9 C 1.52852 * 110.33916 * 159.59935 * 8 7 2 10 10 C 1.53427 * 108.96067 * 51.28703 * 9 8 7 11 11 N 1.39918 * 119.13668 * 179.80376 * 6 5 4 12 12 S 1.65598 * 120.54588 * 346.44299 * 11 6 5 13 13 O 1.42099 * 104.27742 * 198.39489 * 12 11 6 14 14 O 1.42108 * 104.27411 * 326.24945 * 12 11 6 15 15 C 1.81399 * 104.45218 * 82.31894 * 12 11 6 16 16 C 1.52994 * 109.47162 * 180.02562 * 15 12 11 17 17 C 1.52998 * 109.47167 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.47412 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99723 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00158 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99629 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99879 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47104 * 90.00094 * 22 20 18 24 24 H 1.48507 * 109.46902 * 209.99910 * 22 20 18 25 25 H 1.48497 * 109.46952 * 329.99492 * 22 20 18 26 26 H 1.08998 * 109.47099 * 89.99641 * 1 2 3 27 27 H 1.08996 * 109.47139 * 210.00317 * 1 2 3 28 28 H 1.09000 * 109.46720 * 330.00365 * 1 2 3 29 29 H 1.08006 * 119.92211 * 0.02562 * 3 2 1 30 30 H 1.08002 * 120.04462 * 180.02562 * 4 3 2 31 31 H 1.07996 * 119.98925 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46876 * 39.27505 * 8 7 2 33 33 H 1.09004 * 109.28890 * 279.80775 * 8 7 2 34 34 H 1.08996 * 109.57312 * 291.41336 * 9 8 7 35 35 H 1.09000 * 109.57919 * 171.16252 * 9 8 7 36 36 H 1.09002 * 109.79313 * 56.31923 * 10 9 8 37 37 H 1.09000 * 109.79578 * 177.11158 * 10 9 8 38 38 H 1.08996 * 109.46938 * 300.00429 * 15 12 11 39 39 H 1.08999 * 109.46828 * 60.00113 * 15 12 11 40 40 H 1.09006 * 109.46947 * 300.00353 * 16 15 12 41 41 H 1.08999 * 109.47505 * 60.00101 * 16 15 12 42 42 H 1.09003 * 109.46954 * 299.99560 * 17 16 15 43 43 H 1.09001 * 109.47160 * 60.00104 * 17 16 15 44 44 H 0.96998 * 119.99575 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1983 0.0000 4 6 3.5773 1.2059 -0.0005 5 6 4.2724 0.0130 -0.0031 6 6 3.5825 -1.1942 -0.0046 7 6 2.1961 -1.2009 0.0005 8 6 1.4129 -2.4904 0.0100 9 6 2.2824 -3.6437 -0.4903 10 6 3.6032 -3.6473 0.2903 11 7 4.3056 -2.3920 -0.0113 12 16 5.9262 -2.3949 -0.3518 13 8 6.2098 -3.7444 -0.6949 14 8 6.0870 -1.3486 -1.2998 15 6 6.7197 -1.9574 1.2197 16 6 8.2379 -1.9261 1.0331 17 6 8.9072 -1.5577 2.3587 18 6 10.4027 -1.5274 2.1751 19 1 10.8327 -1.7484 1.2094 20 6 11.2218 -1.2165 3.2397 21 7 12.5269 -1.1897 3.0792 22 14 10.4779 -0.8337 4.9098 23 1 10.3508 -2.0880 5.6944 24 1 11.3564 0.1179 5.6366 25 1 9.1353 -0.2263 4.7262 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6509 2.1315 0.0004 30 1 4.1129 2.1438 -0.0001 31 1 5.3523 0.0175 -0.0031 32 1 0.5406 -2.3904 -0.6359 33 1 1.0822 -2.7034 1.0266 34 1 2.4867 -3.5127 -1.5529 35 1 1.7623 -4.5885 -0.3322 36 1 3.4000 -3.7103 1.3594 37 1 4.2132 -4.4957 -0.0200 38 1 6.3730 -0.9751 1.5406 39 1 6.4614 -2.6988 1.9759 40 1 8.5848 -2.9082 0.7119 41 1 8.4959 -1.1845 0.2771 42 1 8.5603 -0.5756 2.6802 43 1 8.6493 -2.2996 3.1145 44 1 13.1032 -0.9713 3.8283 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609626006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:59 Heat of formation + Delta-G solvation = -81.404621 kcal Electronic energy + Delta-G solvation = -25633.735956 eV Core-core repulsion = 22062.438513 eV Total energy + Delta-G solvation = -3571.297443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.31981 -38.62463 -37.69295 -37.26480 -36.59840 -35.22453 -34.30621 -32.07154 -31.38948 -30.26732 -27.66469 -26.28675 -25.44037 -24.36582 -22.98879 -22.07482 -20.95269 -19.96577 -19.05678 -18.72980 -18.03697 -17.50640 -17.13319 -16.72378 -16.31036 -16.18621 -15.91315 -15.27211 -14.93969 -14.89508 -14.69104 -14.32440 -14.22435 -14.14348 -13.93313 -13.75664 -13.48895 -13.40244 -13.31827 -13.22668 -13.10028 -12.75727 -12.68291 -12.64996 -12.36420 -12.15437 -11.89481 -11.71849 -11.68401 -11.52455 -11.46210 -11.44666 -11.03484 -10.80222 -9.47923 -8.95568 -8.32583 -6.38850 -1.06239 0.38653 0.46426 1.34010 1.34767 1.37317 1.48887 2.33918 2.51463 2.81718 2.90887 3.02434 3.32096 3.60566 3.70680 3.82122 3.90364 3.97900 4.05125 4.17996 4.23723 4.35026 4.43234 4.45052 4.51400 4.62779 4.66119 4.73056 4.78931 4.87932 4.90384 4.93467 4.97657 5.02523 5.15852 5.24774 5.26325 5.32466 5.37708 5.39364 5.58501 5.60184 5.64437 5.72688 6.14059 6.21747 6.69031 7.25892 8.84402 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017386 B = 0.003429 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.110146 B = 8163.243884 C = 8851.823656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.092 4.092 5 C -0.207 4.207 6 C 0.168 3.832 7 C -0.126 4.126 8 C -0.073 4.073 9 C -0.130 4.130 10 C 0.089 3.911 11 N -0.937 5.937 12 S 2.605 3.395 13 O -0.973 6.973 14 O -0.975 6.975 15 C -0.605 4.605 16 C -0.102 4.102 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.031 0.969 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.954 3.046 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.241 1.241 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.960 -0.537 -2.844 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.064 4.064 3 C -0.170 4.170 4 C -0.111 4.111 5 C -0.228 4.228 6 C 0.072 3.928 7 C -0.131 4.131 8 C -0.110 4.110 9 C -0.169 4.169 10 C -0.034 4.034 11 N -0.762 5.762 12 S 2.704 3.296 13 O -0.963 6.963 14 O -0.965 6.965 15 C -0.737 4.737 16 C -0.141 4.141 17 C -0.042 4.042 18 C -0.583 4.583 19 H 0.049 0.951 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.188 1.188 24 H -0.209 1.209 25 H -0.164 1.164 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -31.386 -0.839 -3.646 31.608 hybrid contribution 1.164 0.437 0.935 1.556 sum -30.222 -0.401 -2.710 30.346 Atomic orbital electron populations 1.20895 0.88535 1.04179 1.03301 1.20098 0.97676 0.91498 0.97084 1.21253 0.93667 0.98759 1.03335 1.21140 0.95078 0.97293 0.97547 1.21359 1.00504 0.92755 1.08178 1.17450 0.92211 0.83832 0.99291 1.19705 0.90472 0.97166 1.05732 1.20544 0.97508 0.89419 1.03510 1.21864 0.94714 1.00828 0.99453 1.22204 0.95255 0.83502 1.02453 1.55707 1.25939 1.12383 1.82178 1.05151 0.73169 0.73508 0.77741 1.93531 1.83432 1.36290 1.83074 1.93571 1.84947 1.58514 1.59489 1.30546 1.06984 1.14486 1.21711 1.21200 0.89609 1.02345 1.00933 1.19494 0.93370 0.97475 0.93891 1.21520 0.92091 1.47614 0.97053 0.95059 1.26089 0.95024 0.94385 1.03920 1.70079 1.04939 1.50541 1.33565 0.85612 0.79619 0.79040 0.78139 1.18778 1.20948 1.16427 0.90130 0.89945 0.90246 0.83587 0.84282 0.86290 0.88378 0.88554 0.92567 0.86655 0.87998 0.87939 0.83282 0.82268 0.91452 0.91734 0.95054 0.94939 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.19 71.24 0.65 -0.37 16 2 C -0.06 -1.05 5.88 -19.83 -0.12 -1.17 16 3 C -0.15 -2.72 9.68 22.26 0.22 -2.50 16 4 C -0.09 -2.06 10.05 22.24 0.22 -1.83 16 5 C -0.21 -5.56 8.32 22.42 0.19 -5.38 16 6 C 0.17 4.17 6.22 38.14 0.24 4.41 16 7 C -0.13 -2.45 5.77 -19.66 -0.11 -2.56 16 8 C -0.07 -0.90 4.68 29.85 0.14 -0.76 16 9 C -0.13 -1.76 6.10 30.69 0.19 -1.57 16 10 C 0.09 1.56 6.47 86.43 0.56 2.12 16 11 N -0.94 -22.80 3.20 -337.59 -1.08 -23.88 16 12 S 2.60 79.58 4.81 -56.49 -0.27 79.30 16 13 O -0.97 -33.67 16.40 -127.65 -2.09 -35.76 16 14 O -0.98 -35.84 15.05 -127.65 -1.92 -37.76 16 15 C -0.61 -17.47 5.98 71.98 0.43 -17.04 16 16 C -0.10 -3.99 5.16 30.59 0.16 -3.83 16 17 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 18 C -0.54 -31.81 9.66 25.60 0.25 -31.56 16 19 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 20 C 0.00 0.16 5.47 84.65 0.46 0.62 16 21 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 22 Si 0.95 43.48 27.47 68.60 1.88 45.37 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.54 6.76 -2.39 -0.02 0.52 16 28 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 29 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.12 3.46 4.60 -2.91 -0.01 3.45 16 32 H 0.10 0.86 7.12 -2.39 -0.02 0.84 16 33 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.90 6.70 -2.39 -0.02 1.88 16 38 H 0.15 3.80 7.09 -2.39 -0.02 3.78 16 39 H 0.16 3.67 8.14 -2.39 -0.02 3.65 16 40 H 0.07 2.66 8.14 -2.38 -0.02 2.65 16 41 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 43 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -79.11 356.95 1.34 -77.76 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.93 Total: 16.37 kcal Atomic # 6 Polarization: -65.07 SS G_CDS: 3.59 Total: -61.47 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -0.78 Total: -83.81 kcal Atomic # 8 Polarization: -69.50 SS G_CDS: -4.01 Total: -73.52 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Atomic # 16 Polarization: 79.58 SS G_CDS: -0.27 Total: 79.30 kcal Total: -79.11 1.34 -77.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609626006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.640 kcal (2) G-P(sol) polarization free energy of solvation -79.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds