Wall clock time and date at job start Tue Mar 31 2020 14:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 115.54913 * 2 1 4 4 C 1.38232 * 119.99647 * 114.37981 * 3 2 1 5 5 C 1.38233 * 120.00140 * 179.97438 * 4 3 2 6 6 C 1.38242 * 120.00004 * 359.95677 * 5 4 3 7 7 C 1.38236 * 119.99430 * 0.27962 * 6 5 4 8 8 C 1.38228 * 120.00378 * 294.35931 * 3 2 1 9 9 C 1.53001 * 117.49828 * 145.67300 * 2 1 3 10 10 C 1.53002 * 117.49769 * 214.33075 * 2 1 3 11 11 H 1.08994 * 117.49914 * 359.97438 * 10 2 1 12 12 N 1.46505 * 117.49716 * 144.99767 * 10 2 1 13 13 S 1.65596 * 120.00041 * 234.07654 * 12 10 2 14 14 O 1.42101 * 104.27952 * 181.07074 * 13 12 10 15 15 O 1.42103 * 104.27850 * 308.93064 * 13 12 10 16 16 C 1.81402 * 104.44873 * 65.00026 * 13 12 10 17 17 C 1.53002 * 109.47135 * 179.97438 * 16 13 12 18 18 C 1.53001 * 109.47231 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.47062 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00066 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47261 * 59.99796 * 23 21 19 25 25 H 1.48503 * 109.46788 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46832 * 299.99672 * 23 21 19 27 27 H 1.09001 * 109.47172 * 85.57750 * 1 2 3 28 28 H 1.08991 * 109.47310 * 205.58016 * 1 2 3 29 29 H 1.09001 * 109.47225 * 325.58138 * 1 2 3 30 30 H 1.08007 * 120.00351 * 359.97438 * 4 3 2 31 31 H 1.07995 * 120.00515 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.00060 * 180.02562 * 6 5 4 33 33 H 1.08005 * 119.99631 * 179.72715 * 7 6 5 34 34 H 1.08002 * 119.99945 * 359.97438 * 8 3 2 35 35 H 1.08997 * 117.49689 * 215.00455 * 9 2 1 36 36 H 1.09000 * 117.49599 * 359.97438 * 9 2 1 37 37 H 0.97002 * 119.99888 * 54.07151 * 12 10 2 38 38 H 1.08999 * 109.47405 * 299.99570 * 16 13 12 39 39 H 1.09000 * 109.46950 * 60.00430 * 16 13 12 40 40 H 1.09000 * 109.47527 * 300.00274 * 17 16 13 41 41 H 1.09004 * 109.47160 * 59.99980 * 17 16 13 42 42 H 1.08999 * 109.46918 * 299.99832 * 18 17 16 43 43 H 1.09000 * 109.46843 * 60.00457 * 18 17 16 44 44 H 0.96999 * 119.99967 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 6 2.9239 1.7700 1.0904 5 6 3.5205 3.0170 1.0903 6 6 3.3740 3.8532 -0.0007 7 6 2.6260 3.4447 -1.0890 8 6 2.0326 2.1962 -1.0905 9 6 2.2364 -1.1208 0.7653 10 6 2.2364 -1.1207 -0.7654 11 1 1.6112 -1.8583 -1.2686 12 7 3.4930 -0.7900 -1.4422 13 16 3.6746 -1.1142 -3.0559 14 8 4.9987 -0.6915 -3.3515 15 8 3.2948 -2.4775 -3.1843 16 6 2.4652 -0.0369 -3.8729 17 6 2.5368 -0.2460 -5.3869 18 6 1.5163 0.6622 -6.0760 19 6 1.5873 0.4567 -7.5672 20 1 2.2896 -0.2511 -7.9820 21 6 0.7548 1.1716 -8.4021 22 7 -0.1008 2.0332 -7.8970 23 14 0.8423 0.9164 -10.2505 24 1 0.5383 -0.5018 -10.5693 25 1 -0.1490 1.7970 -10.9192 26 1 2.2066 1.2506 -10.7322 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3633 -0.9268 0.4437 29 1 -0.3634 0.8477 0.5809 30 1 3.0390 1.1165 1.9425 31 1 4.1014 3.3378 1.9423 32 1 3.8405 4.8273 -0.0010 33 1 2.5079 4.0998 -1.9396 34 1 1.4520 1.8753 -1.9427 35 1 3.1713 -0.8747 1.2689 36 1 1.6112 -1.8579 1.2691 37 1 4.2186 -0.3809 -0.9450 38 1 1.4636 -0.2811 -3.5191 39 1 2.6895 1.0039 -3.6393 40 1 3.5384 -0.0015 -5.7405 41 1 2.3128 -1.2867 -5.6210 42 1 0.5148 0.4172 -5.7223 43 1 1.7399 1.7030 -5.8420 44 1 -0.6867 2.5359 -8.4842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610265589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:56 Heat of formation + Delta-G solvation = -42.162020 kcal Electronic energy + Delta-G solvation = -25425.307192 eV Core-core repulsion = 21855.711436 eV Total energy + Delta-G solvation = -3569.595756 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.13220 -37.80171 -36.85967 -35.76024 -34.67671 -33.10950 -32.19502 -31.04678 -30.50831 -28.26741 -27.79949 -23.73116 -23.29021 -23.01369 -21.93192 -20.67646 -19.66957 -19.29531 -17.52543 -17.33518 -16.60449 -16.22632 -15.69433 -15.32105 -15.06661 -14.81556 -14.55522 -14.47441 -14.18488 -13.68812 -13.52126 -13.29690 -12.81644 -12.58379 -12.34161 -12.29958 -12.16183 -12.00427 -11.95999 -11.81266 -11.77934 -11.72778 -11.24061 -11.22932 -11.04174 -10.89975 -10.85670 -10.44191 -10.21973 -9.94851 -9.50219 -9.28211 -9.08814 -9.01722 -8.66494 -8.40643 -6.05972 -4.08909 0.45626 1.22494 1.29699 2.77129 3.31972 3.35849 3.38950 3.39313 3.69084 3.93145 4.31889 4.37536 4.42329 4.48721 4.55187 4.78555 4.86496 4.90862 4.95031 5.05749 5.18538 5.25159 5.30795 5.35572 5.43354 5.49907 5.56248 5.63284 5.65441 5.87774 5.90729 5.94468 5.96612 6.05102 6.26619 6.37487 6.43772 6.45748 6.50656 6.85473 6.88388 6.89343 7.56287 7.66662 7.91934 8.32693 8.96972 9.55787 11.05135 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.003618 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.317885 B = 7736.490062 C = 8601.005129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.040 4.040 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.115 4.115 8 C -0.110 4.110 9 C -0.165 4.165 10 C 0.099 3.901 11 H 0.142 0.858 12 N -1.090 6.090 13 S 2.600 3.400 14 O -0.962 6.962 15 O -0.961 6.961 16 C -0.607 4.607 17 C -0.105 4.105 18 C 0.033 3.967 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.415 0.585 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -0.683 22.033 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.109 4.109 3 C -0.041 4.041 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.133 4.133 8 C -0.128 4.128 9 C -0.204 4.204 10 C -0.010 4.010 11 H 0.159 0.841 12 N -0.844 5.844 13 S 2.696 3.304 14 O -0.952 6.952 15 O -0.951 6.951 16 C -0.739 4.739 17 C -0.145 4.145 18 C -0.006 4.006 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.249 0.751 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.696 -1.298 21.514 21.868 hybrid contribution -0.199 0.779 -0.658 1.039 sum 3.497 -0.518 20.857 21.154 Atomic orbital electron populations 1.21352 0.90500 1.02412 1.02862 1.20862 0.95145 0.88661 1.06221 1.18902 0.97329 0.93609 0.94222 1.20995 0.98172 0.96489 0.98051 1.21103 1.00013 0.94363 0.98446 1.21176 0.99228 0.99813 0.93995 1.21259 0.97120 0.96341 0.98534 1.21122 0.99696 0.93891 0.98124 1.23563 1.02775 1.00488 0.93614 1.21622 0.87235 0.99048 0.93088 0.84070 1.55255 1.21883 1.78746 1.28473 1.05336 0.76029 0.76060 0.72931 1.93583 1.34810 1.83948 1.82899 1.93572 1.84808 1.31813 1.84948 1.30582 1.16890 1.15860 1.10540 1.21504 1.03095 1.02618 0.87256 1.19041 0.92917 0.93999 0.94619 1.21220 1.20368 1.23325 0.91626 0.92458 1.25000 0.95230 0.95057 0.98957 1.69941 1.22504 1.25647 1.35315 0.86630 0.77882 0.78176 0.85197 1.20125 1.21247 1.20126 0.91361 0.91750 0.91734 0.86214 0.86306 0.86223 0.85649 0.85551 0.88081 0.87414 0.75089 0.85410 0.85287 0.91641 0.91604 0.96124 0.96142 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.77 37.16 0.36 -0.55 16 2 C -0.11 -0.93 2.28 -155.66 -0.35 -1.28 16 3 C -0.04 -0.40 4.50 -104.63 -0.47 -0.87 16 4 C -0.12 -1.09 9.23 -39.59 -0.37 -1.45 16 5 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 6 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 7 C -0.11 -1.25 10.05 -39.58 -0.40 -1.65 16 8 C -0.11 -1.23 9.63 -39.59 -0.38 -1.61 16 9 C -0.17 -1.25 9.28 -26.69 -0.25 -1.49 16 10 C 0.10 0.96 6.09 -67.89 -0.41 0.54 16 11 H 0.14 1.31 7.92 -51.93 -0.41 0.90 16 12 N -1.09 -12.24 5.33 -4.86 -0.03 -12.26 16 13 S 2.60 38.83 5.46 -107.50 -0.59 38.24 16 14 O -0.96 -17.31 18.08 -57.54 -1.04 -18.35 16 15 O -0.96 -16.94 17.65 -57.54 -1.02 -17.96 16 16 C -0.61 -9.27 6.07 37.16 0.23 -9.05 16 17 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 18 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 19 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 0.89 7.03 -52.48 -0.37 0.52 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 34 H 0.13 1.43 7.58 -52.49 -0.40 1.03 16 35 H 0.10 0.71 7.14 -51.93 -0.37 0.34 16 36 H 0.11 0.65 8.05 -51.93 -0.42 0.23 16 37 H 0.42 4.19 8.84 -34.47 -0.30 3.88 16 38 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 39 H 0.13 1.81 7.63 -51.92 -0.40 1.41 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -34.65 381.58 -11.57 -46.22 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.84 Total: 3.04 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: -3.52 Total: -35.58 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.71 Total: -37.82 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -2.06 Total: -36.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 38.83 SS G_CDS: -0.59 Total: 38.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.65 -11.57 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610265589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.054 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds