Wall clock time and date at job start Tue Mar 31 2020 14:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 115.56145 * 2 1 4 4 C 1.38233 * 120.00074 * 80.23008 * 3 2 1 5 5 C 1.38240 * 120.00054 * 179.80913 * 4 3 2 6 6 C 1.38238 * 119.99490 * 0.40207 * 5 4 3 7 7 C 1.38232 * 120.00542 * 359.85253 * 6 5 4 8 8 C 1.38236 * 119.99688 * 359.95927 * 7 6 5 9 9 C 1.53000 * 117.50164 * 214.31066 * 2 1 3 10 10 C 1.52998 * 117.49952 * 145.68471 * 2 1 3 11 11 H 1.08995 * 117.50112 * 0.02562 * 10 2 1 12 12 N 1.46506 * 117.49963 * 214.97752 * 10 2 1 13 13 S 1.65603 * 119.99593 * 144.43327 * 12 10 2 14 14 O 1.42109 * 104.27426 * 181.07242 * 13 12 10 15 15 O 1.42097 * 104.27946 * 308.92841 * 13 12 10 16 16 C 1.81400 * 104.44798 * 65.00266 * 13 12 10 17 17 C 1.53001 * 109.46777 * 179.97438 * 16 13 12 18 18 C 1.52999 * 109.47354 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47430 * 179.97438 * 18 17 16 20 20 H 1.07991 * 119.99683 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99740 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00288 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99777 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47009 * 59.99453 * 23 21 19 25 25 H 1.48501 * 109.47080 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46880 * 299.99767 * 23 21 19 27 27 H 1.09007 * 109.46683 * 274.31311 * 1 2 3 28 28 H 1.08992 * 109.46932 * 34.30845 * 1 2 3 29 29 H 1.08998 * 109.46922 * 154.31423 * 1 2 3 30 30 H 1.08004 * 120.00190 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.00382 * 180.23133 * 5 4 3 32 32 H 1.08002 * 119.99731 * 179.83076 * 6 5 4 33 33 H 1.08000 * 120.00406 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.00124 * 180.02562 * 8 7 6 35 35 H 1.08990 * 117.50050 * 145.01744 * 9 2 1 36 36 H 1.09000 * 117.49419 * 359.97438 * 9 2 1 37 37 H 0.96997 * 120.00013 * 324.43468 * 12 10 2 38 38 H 1.08991 * 109.47003 * 299.99308 * 16 13 12 39 39 H 1.09003 * 109.47482 * 60.00140 * 16 13 12 40 40 H 1.09005 * 109.47384 * 299.99859 * 17 16 13 41 41 H 1.08998 * 109.47424 * 59.99530 * 17 16 13 42 42 H 1.09005 * 109.46683 * 300.00194 * 18 17 16 43 43 H 1.09003 * 109.46947 * 59.99670 * 18 17 16 44 44 H 0.96993 * 119.99850 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 6 2.2952 2.0707 1.1798 5 6 2.8953 3.3161 1.1804 6 6 3.3728 3.8538 -0.0002 7 6 3.2531 3.1449 -1.1808 8 6 2.6566 1.8979 -1.1808 9 6 2.2365 -1.1210 -0.7650 10 6 2.2365 -1.1209 0.7651 11 1 1.6113 -1.8586 1.2680 12 7 3.4933 -0.7905 1.4415 13 16 3.8657 -1.5013 2.8901 14 8 5.1180 -0.9327 3.2478 15 8 2.7105 -1.2917 3.6905 16 6 4.0555 -3.2616 2.4949 17 6 4.4056 -4.0351 3.7677 18 6 4.5664 -5.5196 3.4344 19 6 4.9118 -6.2814 4.6880 20 1 5.0075 -5.7589 5.6282 21 6 5.1066 -7.6453 4.6341 22 7 4.9905 -8.2815 3.4890 23 14 5.5341 -8.5897 6.1881 24 1 4.4459 -8.4217 7.1846 25 1 5.6902 -10.0306 5.8645 26 1 6.8054 -8.0676 6.7507 27 1 -0.3633 0.0773 1.0248 28 1 -0.3633 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4454 30 1 1.9194 1.6519 2.1016 31 1 2.9885 3.8702 2.1028 32 1 3.8391 4.8279 -0.0001 33 1 3.6258 3.5652 -2.1033 34 1 2.5634 1.3438 -2.1032 35 1 3.1715 -0.8751 -1.2682 36 1 1.6113 -1.8587 -1.2679 37 1 4.1073 -0.1553 1.0408 38 1 3.1221 -3.6439 2.0821 39 1 4.8542 -3.3857 1.7635 40 1 5.3393 -3.6525 4.1802 41 1 3.6074 -3.9109 4.4995 42 1 3.6329 -5.9024 3.0216 43 1 5.3649 -5.6433 2.7028 44 1 5.1272 -9.2410 3.4512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610265590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:59 Heat of formation + Delta-G solvation = -42.239359 kcal Electronic energy + Delta-G solvation = -24772.907624 eV Core-core repulsion = 21203.308514 eV Total energy + Delta-G solvation = -3569.599110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18522 -37.85627 -36.86529 -35.76163 -34.67949 -33.14795 -32.19465 -31.10628 -30.62398 -28.28865 -27.81595 -23.74505 -23.35074 -23.07254 -21.98369 -20.68992 -19.77557 -19.28265 -17.52728 -17.37222 -16.59113 -16.26401 -15.72073 -15.40346 -15.10920 -14.84053 -14.55337 -14.48966 -14.22906 -13.68799 -13.58935 -13.27306 -12.97127 -12.60597 -12.43184 -12.32544 -12.15055 -12.05369 -11.97481 -11.90222 -11.79190 -11.78122 -11.34313 -11.23431 -11.12049 -10.90206 -10.87755 -10.42619 -10.18834 -9.95587 -9.50275 -9.27529 -9.13403 -9.06623 -8.79675 -8.41042 -6.06225 -4.09386 0.43430 1.12025 1.19543 2.76795 3.31819 3.35656 3.38877 3.40698 3.56097 3.92817 4.29477 4.32440 4.41945 4.52419 4.53009 4.76108 4.77290 4.80899 4.87813 4.95172 5.16371 5.22199 5.27612 5.30341 5.36634 5.51244 5.52900 5.56657 5.59446 5.82454 5.84216 5.87022 5.94749 6.01508 6.25441 6.27545 6.32213 6.42185 6.43854 6.78544 6.84261 6.87346 7.55968 7.66033 7.91678 8.32140 8.96652 9.55316 11.04976 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.002594 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.966942 B =10789.640902 C =11250.501569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.045 4.045 4 C -0.104 4.104 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.175 4.175 10 C 0.103 3.897 11 H 0.140 0.860 12 N -1.091 6.091 13 S 2.599 3.401 14 O -0.961 6.961 15 O -0.959 6.959 16 C -0.607 4.607 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.415 0.585 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.020 0.980 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 21.402 -12.587 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.045 4.045 4 C -0.122 4.122 5 C -0.138 4.138 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.131 4.131 9 C -0.214 4.214 10 C -0.006 4.006 11 H 0.158 0.842 12 N -0.845 5.845 13 S 2.696 3.304 14 O -0.952 6.952 15 O -0.949 6.949 16 C -0.739 4.739 17 C -0.146 4.146 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.250 0.750 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.586 21.579 -11.730 25.706 hybrid contribution 0.574 -0.808 0.001 0.991 sum -7.012 20.771 -11.729 24.863 Atomic orbital electron populations 1.21335 0.90573 1.02352 1.02631 1.20696 0.95044 0.88480 1.06002 1.18954 0.98324 0.93944 0.93308 1.21107 0.98655 0.94393 0.98046 1.21200 0.98569 0.95822 0.98257 1.21164 1.00128 0.99964 0.92850 1.21118 0.99787 0.95036 0.98129 1.21015 0.98673 0.95731 0.97636 1.23730 1.02791 1.00350 0.94561 1.21506 0.87148 0.99935 0.91998 0.84207 1.55335 1.27716 1.58500 1.42943 1.05384 0.74128 0.77899 0.73034 1.93587 1.44192 1.76353 1.81052 1.93575 1.50397 1.84832 1.66078 1.30557 1.11283 1.21911 1.10147 1.21512 1.01194 1.00311 0.91573 1.19055 0.97567 0.86840 0.97240 1.21218 1.47987 0.92646 0.94698 0.92420 1.25017 0.95291 0.97802 0.96231 1.69944 1.49701 1.09056 1.24751 0.86614 0.79117 0.78689 0.83366 1.20107 1.21240 1.20110 0.91543 0.91914 0.91661 0.85756 0.85991 0.86242 0.86184 0.86053 0.88034 0.87347 0.75042 0.85454 0.85222 0.91595 0.91556 0.96107 0.96119 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.84 37.16 0.37 -0.48 16 2 C -0.10 -0.86 2.19 -155.66 -0.34 -1.20 16 3 C -0.05 -0.43 4.14 -104.62 -0.43 -0.86 16 4 C -0.10 -1.08 9.24 -39.58 -0.37 -1.44 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 6 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 7 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 8 C -0.11 -0.96 9.33 -39.58 -0.37 -1.33 16 9 C -0.18 -1.34 9.42 -26.73 -0.25 -1.59 16 10 C 0.10 0.99 6.01 -67.93 -0.41 0.58 16 11 H 0.14 1.24 8.11 -51.93 -0.42 0.82 16 12 N -1.09 -12.11 5.21 -4.89 -0.03 -12.14 16 13 S 2.60 37.97 5.44 -107.50 -0.58 37.39 16 14 O -0.96 -17.04 18.08 -57.54 -1.04 -18.08 16 15 O -0.96 -16.48 17.82 -57.54 -1.03 -17.50 16 16 C -0.61 -9.20 6.07 37.16 0.23 -8.98 16 17 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 18 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 19 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 23 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.86 7.93 -52.48 -0.42 0.44 16 35 H 0.10 0.76 8.01 -51.93 -0.42 0.34 16 36 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.42 4.28 8.25 -34.48 -0.28 4.00 16 38 H 0.13 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -34.84 383.38 -11.62 -46.45 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.98 Total: 2.25 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: -3.46 Total: -34.90 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.71 Total: -37.93 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -2.07 Total: -35.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 37.97 SS G_CDS: -0.58 Total: 37.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.84 -11.62 -46.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610265590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.214 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds