Wall clock time and date at job start Tue Mar 31 2020 14:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 115.56145 * 2 1 4 4 C 1.38233 * 120.00074 * 80.23008 * 3 2 1 5 5 C 1.38240 * 120.00054 * 179.80913 * 4 3 2 6 6 C 1.38238 * 119.99490 * 0.40207 * 5 4 3 7 7 C 1.38232 * 120.00542 * 359.85253 * 6 5 4 8 8 C 1.38236 * 119.99688 * 359.95927 * 7 6 5 9 9 C 1.53000 * 117.50164 * 214.31066 * 2 1 3 10 10 C 1.52998 * 117.49952 * 145.68471 * 2 1 3 11 11 H 1.08995 * 117.50112 * 0.02562 * 10 2 1 12 12 N 1.46506 * 117.49963 * 214.97752 * 10 2 1 13 13 S 1.65603 * 119.99593 * 144.43327 * 12 10 2 14 14 O 1.42109 * 104.27426 * 181.07242 * 13 12 10 15 15 O 1.42097 * 104.27946 * 308.92841 * 13 12 10 16 16 C 1.81400 * 104.44798 * 65.00266 * 13 12 10 17 17 C 1.53001 * 109.46777 * 179.97438 * 16 13 12 18 18 C 1.52999 * 109.47354 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47430 * 179.97438 * 18 17 16 20 20 H 1.07991 * 119.99683 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99740 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00288 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99777 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47009 * 59.99453 * 23 21 19 25 25 H 1.48501 * 109.47080 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46880 * 299.99767 * 23 21 19 27 27 H 1.09007 * 109.46683 * 274.31311 * 1 2 3 28 28 H 1.08992 * 109.46932 * 34.30845 * 1 2 3 29 29 H 1.08998 * 109.46922 * 154.31423 * 1 2 3 30 30 H 1.08004 * 120.00190 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.00382 * 180.23133 * 5 4 3 32 32 H 1.08002 * 119.99731 * 179.83076 * 6 5 4 33 33 H 1.08000 * 120.00406 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.00124 * 180.02562 * 8 7 6 35 35 H 1.08990 * 117.50050 * 145.01744 * 9 2 1 36 36 H 1.09000 * 117.49419 * 359.97438 * 9 2 1 37 37 H 0.96997 * 120.00013 * 324.43468 * 12 10 2 38 38 H 1.08991 * 109.47003 * 299.99308 * 16 13 12 39 39 H 1.09003 * 109.47482 * 60.00140 * 16 13 12 40 40 H 1.09005 * 109.47384 * 299.99859 * 17 16 13 41 41 H 1.08998 * 109.47424 * 59.99530 * 17 16 13 42 42 H 1.09005 * 109.46683 * 300.00194 * 18 17 16 43 43 H 1.09003 * 109.46947 * 59.99670 * 18 17 16 44 44 H 0.96993 * 119.99850 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 6 2.2952 2.0707 1.1798 5 6 2.8953 3.3161 1.1804 6 6 3.3728 3.8538 -0.0002 7 6 3.2531 3.1449 -1.1808 8 6 2.6566 1.8979 -1.1808 9 6 2.2365 -1.1210 -0.7650 10 6 2.2365 -1.1209 0.7651 11 1 1.6113 -1.8586 1.2680 12 7 3.4933 -0.7905 1.4415 13 16 3.8657 -1.5013 2.8901 14 8 5.1180 -0.9327 3.2478 15 8 2.7105 -1.2917 3.6905 16 6 4.0555 -3.2616 2.4949 17 6 4.4056 -4.0351 3.7677 18 6 4.5664 -5.5196 3.4344 19 6 4.9118 -6.2814 4.6880 20 1 5.0075 -5.7589 5.6282 21 6 5.1066 -7.6453 4.6341 22 7 4.9905 -8.2815 3.4890 23 14 5.5341 -8.5897 6.1881 24 1 4.4459 -8.4217 7.1846 25 1 5.6902 -10.0306 5.8645 26 1 6.8054 -8.0676 6.7507 27 1 -0.3633 0.0773 1.0248 28 1 -0.3633 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4454 30 1 1.9194 1.6519 2.1016 31 1 2.9885 3.8702 2.1028 32 1 3.8391 4.8279 -0.0001 33 1 3.6258 3.5652 -2.1033 34 1 2.5634 1.3438 -2.1032 35 1 3.1715 -0.8751 -1.2682 36 1 1.6113 -1.8587 -1.2679 37 1 4.1073 -0.1553 1.0408 38 1 3.1221 -3.6439 2.0821 39 1 4.8542 -3.3857 1.7635 40 1 5.3393 -3.6525 4.1802 41 1 3.6074 -3.9109 4.4995 42 1 3.6329 -5.9024 3.0216 43 1 5.3649 -5.6433 2.7028 44 1 5.1272 -9.2410 3.4512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610265590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:58 Heat of formation + Delta-G solvation = -64.045042 kcal Electronic energy + Delta-G solvation = -24773.853189 eV Core-core repulsion = 21203.308514 eV Total energy + Delta-G solvation = -3570.544675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85561 -38.56684 -38.14734 -37.07812 -36.47191 -34.16856 -34.00915 -31.76343 -31.29361 -29.65823 -28.91341 -25.62812 -24.00713 -23.76597 -22.69006 -22.42978 -20.45676 -20.42640 -18.76285 -18.51555 -18.10478 -17.17240 -17.11515 -16.57404 -16.42171 -15.80742 -15.75858 -15.44308 -15.27280 -14.50119 -14.37024 -14.24825 -14.12479 -13.92592 -13.63071 -13.51022 -13.24177 -13.20154 -13.15040 -13.02454 -12.96798 -12.73963 -12.72138 -12.68398 -12.63500 -12.14842 -11.98975 -11.76952 -11.74763 -11.38502 -11.05950 -10.86339 -10.57047 -10.00316 -9.79608 -9.51163 -8.22704 -6.33687 -0.77922 0.45621 0.51737 1.40168 1.42592 1.50540 1.70707 2.39738 2.65995 2.81477 2.89844 3.10781 3.21182 3.64598 3.70404 3.76683 3.87818 3.92739 4.07578 4.14111 4.19653 4.25721 4.32290 4.39051 4.63142 4.65092 4.72607 4.90974 4.93322 4.95917 4.96949 4.99774 5.05706 5.18361 5.21831 5.30041 5.37330 5.45129 5.62869 5.63034 5.65447 5.74061 5.79342 5.98852 6.13894 6.19695 6.81683 7.35549 8.88570 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.002594 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.966942 B =10789.640902 C =11250.501569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.053 4.053 4 C -0.125 4.125 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.155 4.155 10 C 0.074 3.926 11 H 0.146 0.854 12 N -1.078 6.078 13 S 2.629 3.371 14 O -0.993 6.993 15 O -0.985 6.985 16 C -0.605 4.605 17 C -0.107 4.107 18 C 0.032 3.968 19 C -0.554 4.554 20 H 0.059 0.941 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.268 1.268 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.421 0.579 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.005 0.995 43 H 0.003 0.997 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 21.925 -13.757 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.053 4.053 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.147 4.147 7 C -0.142 4.142 8 C -0.134 4.134 9 C -0.194 4.194 10 C -0.034 4.034 11 H 0.163 0.837 12 N -0.835 5.835 13 S 2.725 3.275 14 O -0.984 6.984 15 O -0.975 6.975 16 C -0.736 4.736 17 C -0.147 4.147 18 C -0.006 4.006 19 C -0.592 4.592 20 H 0.078 0.922 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.786 3.214 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.193 1.193 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.257 0.743 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.752 22.110 -12.895 26.744 hybrid contribution 0.593 -0.902 0.286 1.116 sum -7.159 21.209 -12.609 25.692 Atomic orbital electron populations 1.21357 0.89887 1.03329 1.02285 1.20757 0.95569 0.88164 1.05790 1.19085 0.98562 0.94330 0.93363 1.21120 0.99962 0.95256 0.98010 1.21394 0.98860 0.95798 0.99225 1.21439 0.99852 1.00827 0.92585 1.21453 0.99048 0.94840 0.98892 1.21247 0.98254 0.96080 0.97840 1.23829 1.03022 0.99720 0.92807 1.21828 0.86730 1.01280 0.93520 0.83687 1.54891 1.28521 1.57973 1.42073 1.04265 0.72804 0.77204 0.73227 1.93537 1.45737 1.76906 1.82202 1.93540 1.51258 1.85096 1.67616 1.30497 1.13042 1.21956 1.08152 1.21328 1.01407 0.97813 0.94124 1.18950 0.95916 0.89959 0.95782 1.21717 1.48097 0.93542 0.95862 0.92233 1.25921 0.95068 0.98891 0.99589 1.70056 1.50517 1.09465 1.26863 0.85551 0.79189 0.77303 0.79351 1.19210 1.20571 1.19302 0.92494 0.91616 0.90092 0.87351 0.85419 0.84375 0.83931 0.84364 0.87443 0.85377 0.74321 0.83286 0.83607 0.91781 0.91445 0.97630 0.97909 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.84 71.98 0.71 -0.81 16 2 C -0.10 -1.58 2.19 -52.93 -0.12 -1.69 16 3 C -0.05 -0.95 4.14 -19.86 -0.08 -1.03 16 4 C -0.13 -2.60 9.24 22.27 0.21 -2.39 16 5 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 6 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 7 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 8 C -0.12 -1.74 9.33 22.27 0.21 -1.53 16 9 C -0.15 -1.95 9.42 30.60 0.29 -1.67 16 10 C 0.07 1.32 6.01 44.99 0.27 1.59 16 11 H 0.15 2.38 8.11 -2.39 -0.02 2.36 16 12 N -1.08 -22.91 5.21 -169.38 -0.88 -23.80 16 13 S 2.63 75.87 5.44 -56.49 -0.31 75.57 16 14 O -0.99 -35.17 18.08 -127.65 -2.31 -37.47 16 15 O -0.99 -33.87 17.82 -127.65 -2.27 -36.15 16 16 C -0.61 -17.89 6.07 71.98 0.44 -17.46 16 17 C -0.11 -4.36 5.16 30.59 0.16 -4.20 16 18 C 0.03 1.65 4.97 29.85 0.15 1.80 16 19 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 20 H 0.06 3.27 7.74 -2.92 -0.02 3.24 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 23 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 29 H 0.08 0.83 7.90 -2.39 -0.02 0.81 16 30 H 0.11 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.14 1.55 7.93 -2.91 -0.02 1.52 16 35 H 0.11 1.27 8.01 -2.39 -0.02 1.25 16 36 H 0.13 1.14 8.05 -2.39 -0.02 1.13 16 37 H 0.42 8.27 8.25 -96.74 -0.80 7.47 16 38 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.15 3.83 8.14 -2.39 -0.02 3.82 16 40 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.01 0.28 8.14 -2.38 -0.02 0.27 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -74.91 383.38 0.31 -74.60 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.18 Total: 19.94 kcal Atomic # 6 Polarization: -67.17 SS G_CDS: 3.59 Total: -63.58 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -0.60 Total: -79.04 kcal Atomic # 8 Polarization: -69.04 SS G_CDS: -4.58 Total: -73.62 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 75.87 SS G_CDS: -0.31 Total: 75.57 kcal Total: -74.91 0.31 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610265590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.553 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds