Wall clock time and date at job start Tue Mar 31 2020 14:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50693 * 115.54949 * 2 1 4 4 C 1.38233 * 120.00207 * 325.71786 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.38238 * 119.99693 * 0.02562 * 6 5 4 8 8 C 1.38234 * 120.00063 * 359.97438 * 7 6 5 9 9 C 1.53008 * 117.49593 * 214.32982 * 2 1 3 10 10 C 1.53002 * 117.51808 * 145.70094 * 2 1 3 11 11 H 1.08997 * 117.49968 * 214.96912 * 10 2 1 12 12 N 1.46498 * 117.50016 * 359.97438 * 10 2 1 13 13 S 1.65597 * 119.99937 * 214.99955 * 12 10 2 14 14 O 1.42104 * 104.27698 * 181.06735 * 13 12 10 15 15 O 1.42091 * 104.27870 * 308.92195 * 13 12 10 16 16 C 1.81400 * 104.45001 * 64.99834 * 13 12 10 17 17 C 1.53005 * 109.47072 * 179.97438 * 16 13 12 18 18 C 1.53003 * 109.46865 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.46896 * 180.02562 * 18 17 16 20 20 H 1.08010 * 119.99892 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99928 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99869 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00062 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47222 * 89.99750 * 23 21 19 25 25 H 1.48505 * 109.46946 * 209.99622 * 23 21 19 26 26 H 1.48501 * 109.46973 * 329.99700 * 23 21 19 27 27 H 1.08997 * 109.47124 * 34.41483 * 1 2 3 28 28 H 1.08999 * 109.47645 * 154.41752 * 1 2 3 29 29 H 1.09001 * 109.46955 * 274.41889 * 1 2 3 30 30 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 32 32 H 1.07997 * 120.00475 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99673 * 179.97438 * 7 6 5 34 34 H 1.08000 * 120.00005 * 179.97438 * 8 7 6 35 35 H 1.08996 * 117.49930 * 359.97438 * 9 2 1 36 36 H 1.08999 * 117.49678 * 144.99594 * 9 2 1 37 37 H 0.97006 * 119.99946 * 34.99140 * 12 10 2 38 38 H 1.08997 * 109.47099 * 300.00148 * 16 13 12 39 39 H 1.08999 * 109.46834 * 60.00024 * 16 13 12 40 40 H 1.09002 * 109.46905 * 299.99992 * 17 16 13 41 41 H 1.08998 * 109.46567 * 59.99921 * 17 16 13 42 42 H 1.09006 * 109.46856 * 299.99672 * 18 17 16 43 43 H 1.08992 * 109.47331 * 60.00215 * 18 17 16 44 44 H 0.97004 * 120.00351 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 6 1.5856 2.4098 -0.6743 5 6 2.1789 3.6583 -0.6695 6 6 3.3693 3.8554 0.0050 7 6 3.9667 2.8037 0.6743 8 6 3.3734 1.5551 0.6696 9 6 2.2364 -1.1208 -0.7654 10 6 2.2369 -1.1210 0.7646 11 1 3.1721 -0.8750 1.2677 12 7 1.3970 -2.1122 1.4415 13 16 1.8851 -2.7653 2.8828 14 8 0.8546 -3.6846 3.2179 15 8 3.2115 -3.2104 2.6346 16 6 1.8888 -1.3651 4.0361 17 6 2.3276 -1.8460 5.4208 18 6 2.3300 -0.6651 6.3936 19 6 2.7628 -1.1387 7.7572 20 1 3.0109 -2.1781 7.9144 21 6 2.8421 -0.2451 8.8042 22 7 3.2193 -0.6584 9.9944 23 14 2.4124 1.5524 8.5326 24 1 0.9648 1.7598 8.7911 25 1 3.2069 2.3969 9.4604 26 1 2.7238 1.9294 7.1304 27 1 -0.3633 0.8478 -0.5808 28 1 -0.3634 -0.9269 -0.4437 29 1 -0.3633 0.0792 1.0246 30 1 0.6552 2.2561 -1.2008 31 1 1.7122 4.4800 -1.1925 32 1 3.8330 4.8307 0.0084 33 1 4.8969 2.9576 1.2010 34 1 3.8403 0.7334 1.1921 35 1 1.6111 -1.8583 -1.2686 36 1 3.1712 -0.8747 -1.2690 37 1 0.5548 -2.3859 1.0454 38 1 2.5812 -0.6026 3.6796 39 1 0.8855 -0.9439 4.0993 40 1 1.6348 -2.6084 5.7770 41 1 3.3308 -2.2676 5.3578 42 1 3.0227 0.0975 6.0375 43 1 1.3267 -0.2440 6.4564 44 1 3.2748 -0.0299 10.7311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610265591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:02 Heat of formation + Delta-G solvation = -35.227057 kcal Electronic energy + Delta-G solvation = -24965.511887 eV Core-core repulsion = 21396.216853 eV Total energy + Delta-G solvation = -3569.295033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30339 -38.01311 -36.97118 -35.85802 -34.82898 -33.22464 -32.22461 -31.31070 -30.35303 -28.70156 -28.39434 -23.66113 -23.38172 -23.02523 -22.12741 -20.55892 -19.75058 -19.42828 -17.93014 -17.03170 -16.92148 -16.58408 -15.94812 -15.47277 -15.39640 -14.94029 -14.44069 -14.33926 -14.20269 -13.96072 -13.69112 -13.19294 -12.95410 -12.82554 -12.67202 -12.40283 -12.32140 -12.16881 -12.01413 -11.99970 -11.90925 -11.83788 -11.58952 -11.30289 -11.22014 -11.00451 -10.95898 -10.52978 -10.10424 -9.88329 -9.70920 -9.29820 -9.18698 -9.16538 -8.78171 -8.59369 -6.09116 -4.08446 0.32677 1.06649 1.15888 2.64762 3.26121 3.27580 3.33848 3.35963 3.68016 3.84962 4.18543 4.26541 4.32081 4.39776 4.43694 4.53268 4.65849 4.77076 4.84519 4.91110 5.02232 5.09979 5.20247 5.24805 5.28022 5.41864 5.44347 5.50406 5.55117 5.72537 5.76734 5.80492 5.84618 5.89664 6.12096 6.24316 6.25070 6.29061 6.34615 6.65190 6.73163 6.75247 7.11877 7.25662 7.70281 8.46801 8.95251 9.52070 11.04168 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.004005 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.866265 B = 6989.156314 C = 9098.490573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C -0.042 4.042 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.164 4.164 10 C 0.096 3.904 11 H 0.139 0.861 12 N -1.092 6.092 13 S 2.602 3.398 14 O -0.958 6.958 15 O -0.956 6.956 16 C -0.613 4.613 17 C -0.098 4.098 18 C -0.004 4.004 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.879 3.121 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.416 0.584 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.020 0.980 43 H 0.016 0.984 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 6.616 -26.331 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.104 4.104 3 C -0.043 4.043 4 C -0.132 4.132 5 C -0.136 4.136 6 C -0.143 4.143 7 C -0.130 4.130 8 C -0.140 4.140 9 C -0.203 4.203 10 C -0.012 4.012 11 H 0.156 0.844 12 N -0.845 5.845 13 S 2.698 3.302 14 O -0.949 6.949 15 O -0.946 6.946 16 C -0.745 4.745 17 C -0.137 4.137 18 C -0.043 4.043 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.133 4.133 22 N -0.539 5.539 23 Si 0.706 3.294 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.250 0.750 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.507 5.763 -25.921 26.785 hybrid contribution -0.687 1.685 -0.043 1.820 sum -4.194 7.447 -25.964 27.335 Atomic orbital electron populations 1.21338 0.90963 1.02297 1.02755 1.20732 0.95370 0.88349 1.05933 1.18979 0.94656 0.93060 0.97578 1.20961 1.00134 0.92499 0.99585 1.21137 0.95906 0.97014 0.99559 1.21181 0.96028 0.99043 0.98060 1.21185 1.00077 0.92845 0.98910 1.21109 0.95560 0.97778 0.99562 1.23655 1.02919 0.99520 0.94191 1.21582 0.95199 0.91529 0.92931 0.84352 1.55348 1.32959 1.56358 1.39882 1.05311 0.74368 0.76465 0.74061 1.93597 1.58321 1.59825 1.83139 1.93589 1.38560 1.79139 1.83306 1.30610 1.11143 1.19101 1.13661 1.21323 1.01487 1.01390 0.89498 1.19525 0.96789 0.93250 0.94697 1.21135 1.45818 0.97566 0.91994 0.90716 1.25015 0.94551 0.98762 0.95006 1.69912 1.47762 1.35258 1.00944 0.86794 0.78723 0.85401 0.78462 1.20216 1.21252 1.19023 0.91511 0.91979 0.91447 0.85902 0.86100 0.86120 0.85747 0.85836 0.87715 0.87631 0.74994 0.85518 0.85169 0.90962 0.90932 0.96173 0.96610 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 8.86 37.16 0.33 -0.49 16 2 C -0.10 -0.83 2.55 -155.66 -0.40 -1.23 16 3 C -0.04 -0.39 5.45 -104.63 -0.57 -0.96 16 4 C -0.11 -0.96 9.27 -39.58 -0.37 -1.32 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 6 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 7 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 8 C -0.12 -1.17 9.39 -39.58 -0.37 -1.54 16 9 C -0.16 -1.26 9.80 -26.72 -0.26 -1.52 16 10 C 0.10 0.89 5.66 -67.93 -0.38 0.51 16 11 H 0.14 1.26 6.03 -51.93 -0.31 0.94 16 12 N -1.09 -10.90 5.57 -4.89 -0.03 -10.93 16 13 S 2.60 35.98 5.44 -107.50 -0.58 35.40 16 14 O -0.96 -16.10 18.08 -57.54 -1.04 -17.14 16 15 O -0.96 -16.06 17.80 -57.54 -1.02 -17.08 16 16 C -0.61 -8.70 6.07 37.16 0.23 -8.47 16 17 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 18 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 19 C -0.53 -14.96 9.66 -34.44 -0.33 -15.30 16 20 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 23 Si 0.88 21.42 27.47 -169.99 -4.67 16.76 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 27 H 0.07 0.41 6.14 -51.93 -0.32 0.09 16 28 H 0.06 0.36 7.63 -51.93 -0.40 -0.03 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.12 0.82 6.44 -52.49 -0.34 0.49 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.07 5.93 -52.49 -0.31 0.76 16 35 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.42 3.36 8.09 -34.47 -0.28 3.08 16 38 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 43 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -35.92 373.00 -11.15 -47.07 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.53 Total: 2.12 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -3.67 Total: -34.92 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.75 Total: -37.83 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -2.06 Total: -34.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 35.98 SS G_CDS: -0.58 Total: 35.40 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.92 -11.15 -47.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610265591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.843 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds