Wall clock time and date at job start Tue Mar 31 2020 14:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 110.47036 * 2 1 4 4 C 1.53754 * 110.42515 * 122.44065 * 2 1 3 5 5 N 1.46534 * 105.18379 * 118.76517 * 4 2 1 6 6 S 1.65592 * 124.95656 * 180.02562 * 5 4 2 7 7 O 1.42100 * 104.27966 * 26.04441 * 6 5 4 8 8 O 1.42096 * 104.28176 * 153.90181 * 6 5 4 9 9 C 1.81399 * 104.45028 * 269.97486 * 6 5 4 10 10 C 1.53001 * 109.47480 * 179.97438 * 9 6 5 11 11 C 1.52995 * 109.47254 * 179.97438 * 10 9 6 12 12 C 1.50694 * 109.47063 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00185 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99582 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00132 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46909 * 89.99836 * 16 14 12 18 18 H 1.48493 * 109.47252 * 209.99862 * 16 14 12 19 19 H 1.48501 * 109.46969 * 330.00237 * 16 14 12 20 20 C 1.39577 * 110.08899 * 0.02562 * 5 4 2 21 21 C 1.39669 * 129.32317 * 180.02562 * 20 5 4 22 22 C 1.37835 * 120.28254 * 179.97438 * 21 20 5 23 23 C 1.38298 * 120.23030 * 0.02562 * 22 21 20 24 24 C 1.38231 * 119.83516 * 359.97438 * 23 22 21 25 25 C 1.38173 * 120.14838 * 0.02890 * 24 23 22 26 26 H 1.09004 * 109.47164 * 297.55261 * 1 2 3 27 27 H 1.08993 * 109.47666 * 57.55761 * 1 2 3 28 28 H 1.09003 * 109.46765 * 177.56269 * 1 2 3 29 29 H 1.08997 * 109.46980 * 182.44638 * 3 2 1 30 30 H 1.08999 * 109.46972 * 302.44502 * 3 2 1 31 31 H 1.08996 * 109.47154 * 62.44107 * 3 2 1 32 32 H 1.09005 * 110.29812 * 359.84018 * 4 2 1 33 33 H 1.08994 * 110.30071 * 237.69530 * 4 2 1 34 34 H 1.08994 * 109.46982 * 300.00220 * 9 6 5 35 35 H 1.08999 * 109.46997 * 60.00051 * 9 6 5 36 36 H 1.09001 * 109.46797 * 300.00467 * 10 9 6 37 37 H 1.08999 * 109.46779 * 60.00144 * 10 9 6 38 38 H 1.08997 * 109.47199 * 299.99886 * 11 10 9 39 39 H 1.08999 * 109.47052 * 60.00382 * 11 10 9 40 40 H 0.97006 * 119.99514 * 180.02562 * 15 14 12 41 41 H 1.07999 * 119.85780 * 359.95631 * 21 20 5 42 42 H 1.07999 * 119.88316 * 179.72278 * 22 21 20 43 43 H 1.08005 * 120.08475 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.92756 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4334 0.0000 4 6 2.0666 -0.7729 1.2160 5 7 2.8383 -1.8847 0.6541 6 16 3.6342 -3.0323 1.5438 7 8 2.9267 -3.0741 2.7754 8 8 3.6841 -4.1662 0.6888 9 6 5.2952 -2.3450 1.7869 10 6 6.1378 -3.3247 2.6063 11 6 7.5389 -2.7452 2.8109 12 6 8.3688 -3.7104 3.6173 13 1 7.9400 -4.6440 3.9503 14 6 9.6757 -3.4016 3.9301 15 7 10.1980 -2.2650 3.5242 16 14 10.7043 -4.5978 4.9305 17 1 11.4056 -5.5334 4.0149 18 1 11.7041 -3.8437 5.7285 19 1 9.8209 -5.3673 5.8430 20 6 2.8046 -1.8352 -0.7404 21 6 3.3982 -2.6909 -1.6710 22 6 3.2416 -2.4651 -3.0216 23 6 2.4956 -1.3887 -3.4658 24 6 1.9049 -0.5371 -2.5510 25 6 2.0590 -0.7593 -1.1960 26 1 -0.3634 0.4754 0.9111 27 1 -0.3634 0.5512 -0.8672 28 1 -0.3633 -1.0268 -0.0437 29 1 3.1540 1.4147 -0.0439 30 1 1.6757 1.9666 -0.8672 31 1 1.7468 1.9401 0.9110 32 1 1.2405 -1.1520 1.8177 33 1 2.7105 -0.1316 1.8177 34 1 5.7665 -2.1823 0.8178 35 1 5.2216 -1.3965 2.3190 36 1 5.6661 -3.4870 3.5755 37 1 6.2114 -4.2733 2.0746 38 1 8.0102 -2.5833 1.8415 39 1 7.4656 -1.7964 3.3423 40 1 11.1176 -2.0480 3.7440 41 1 3.9827 -3.5330 -1.3308 42 1 3.7072 -3.1284 -3.7356 43 1 2.3747 -1.2137 -4.5247 44 1 1.3223 0.3042 -2.8962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610711846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:40 Heat of formation + Delta-G solvation = -57.435744 kcal Electronic energy + Delta-G solvation = -25504.040280 eV Core-core repulsion = 21933.782206 eV Total energy + Delta-G solvation = -3570.258074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99204 -37.33052 -36.78381 -35.95996 -34.75485 -34.52993 -32.23758 -30.27053 -29.65896 -27.89571 -27.61116 -26.32094 -23.80523 -23.20972 -22.24674 -20.62004 -19.82416 -19.22614 -17.73450 -16.81817 -16.63368 -16.00867 -15.91723 -15.57302 -15.17332 -14.91812 -14.50285 -14.37937 -14.02589 -13.91067 -13.42788 -13.12428 -12.93741 -12.72353 -12.63567 -12.35167 -12.32503 -12.20481 -12.10053 -11.95505 -11.88174 -11.53977 -11.35495 -11.29828 -11.16269 -10.95253 -10.91726 -10.68394 -10.66558 -10.40688 -10.01127 -9.45885 -9.18626 -8.92558 -8.43671 -8.01795 -6.08470 -4.11884 0.16303 1.26308 1.32370 2.45353 3.28785 3.34973 3.38899 3.60824 3.84731 3.92227 4.01827 4.30366 4.39968 4.64762 4.67293 4.83324 4.91625 5.03606 5.04232 5.10368 5.26462 5.27930 5.30217 5.33369 5.36371 5.43151 5.57482 5.57932 5.64311 5.72723 5.78996 5.87498 6.00539 6.06519 6.16846 6.21279 6.33563 6.36186 6.45866 6.52759 6.80064 6.93383 7.52762 7.61911 7.89030 8.28834 8.94126 9.53010 11.02706 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.003081 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.604692 B = 9085.449050 C = 9335.665184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.026 4.026 3 C -0.137 4.137 4 C 0.119 3.881 5 N -0.941 5.941 6 S 2.594 3.406 7 O -0.947 6.947 8 O -0.944 6.944 9 C -0.602 4.602 10 C -0.105 4.105 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.169 3.831 21 C -0.153 4.153 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.074 4.074 25 C -0.126 4.126 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 7.698 -12.228 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 C -0.194 4.194 4 C -0.005 4.005 5 N -0.762 5.762 6 S 2.694 3.306 7 O -0.938 6.938 8 O -0.935 6.935 9 C -0.735 4.735 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.072 3.928 21 C -0.174 4.174 22 C -0.104 4.104 23 C -0.169 4.169 24 C -0.093 4.093 25 C -0.130 4.130 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.162 0.838 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.638 6.918 -11.740 23.903 hybrid contribution 1.173 -0.062 0.462 1.262 sum -18.465 6.856 -11.278 22.697 Atomic orbital electron populations 1.21856 0.92623 1.02464 1.02326 1.20076 0.96343 0.95356 0.90986 1.21874 1.01562 0.93594 1.02368 1.22117 0.95821 0.86672 0.95932 1.56491 1.62814 1.44034 1.12909 1.05810 0.77540 0.73760 0.73483 1.93583 1.70794 1.85505 1.43913 1.93561 1.87252 1.46591 1.66091 1.30545 1.19567 1.12385 1.10956 1.21540 0.99305 0.96122 0.97519 1.19063 0.87723 0.96434 0.97484 1.21237 0.96849 1.04419 1.34068 0.92333 1.25022 0.97908 0.95392 0.96018 1.69958 1.14660 1.22628 1.46099 0.86545 0.80049 0.80968 0.80205 1.20527 1.21141 1.19716 1.18059 0.96884 0.95694 0.82193 1.21081 1.03391 1.00607 0.92350 1.20881 0.97720 0.97274 0.94519 1.20987 1.00308 0.96259 0.99322 1.20320 0.99099 0.99157 0.90715 1.20012 1.01924 0.97041 0.94063 0.91803 0.91917 0.92182 0.91957 0.91905 0.91794 0.89262 0.89754 0.85074 0.85191 0.91457 0.91405 0.96022 0.96052 0.92852 0.83759 0.85340 0.85802 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.39 37.16 0.31 -0.71 16 2 C -0.03 -0.24 1.03 -155.01 -0.16 -0.40 16 3 C -0.14 -1.03 8.39 37.16 0.31 -0.72 16 4 C 0.12 1.27 6.39 -3.63 -0.02 1.25 16 5 N -0.94 -12.46 3.40 -58.12 -0.20 -12.66 16 6 S 2.59 40.45 5.56 -107.50 -0.60 39.86 16 7 O -0.95 -16.85 17.56 -57.54 -1.01 -17.86 16 8 O -0.94 -16.71 15.25 -57.54 -0.88 -17.59 16 9 C -0.60 -9.52 6.18 37.16 0.23 -9.29 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 11 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 12 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.17 2.22 6.59 -83.66 -0.55 1.67 16 21 C -0.15 -2.02 9.37 -39.19 -0.37 -2.38 16 22 C -0.09 -0.92 10.02 -39.71 -0.40 -1.31 16 23 C -0.15 -1.40 10.06 -39.56 -0.40 -1.80 16 24 C -0.07 -0.70 10.04 -39.61 -0.40 -1.10 16 25 C -0.13 -1.38 4.87 -104.26 -0.51 -1.89 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.91 7.70 -51.93 -0.40 0.51 16 33 H 0.08 0.76 7.70 -51.93 -0.40 0.36 16 34 H 0.13 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.13 1.82 8.14 -51.92 -0.42 1.40 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 2.04 6.11 -52.49 -0.32 1.72 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -34.01 371.39 -11.01 -45.02 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.00 Total: -1.26 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -2.64 Total: -31.85 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.54 Total: -38.40 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.89 Total: -35.45 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 40.45 SS G_CDS: -0.60 Total: 39.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.01 -11.01 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610711846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.412 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds