Wall clock time and date at job start Tue Mar 31 2020 14:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 110.47036 * 2 1 4 4 C 1.53754 * 110.42515 * 122.44065 * 2 1 3 5 5 N 1.46534 * 105.18379 * 118.76517 * 4 2 1 6 6 S 1.65592 * 124.95656 * 180.02562 * 5 4 2 7 7 O 1.42100 * 104.27966 * 26.04441 * 6 5 4 8 8 O 1.42096 * 104.28176 * 153.90181 * 6 5 4 9 9 C 1.81399 * 104.45028 * 269.97486 * 6 5 4 10 10 C 1.53001 * 109.47480 * 179.97438 * 9 6 5 11 11 C 1.52995 * 109.47254 * 179.97438 * 10 9 6 12 12 C 1.50694 * 109.47063 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00185 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99582 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00132 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46909 * 89.99836 * 16 14 12 18 18 H 1.48493 * 109.47252 * 209.99862 * 16 14 12 19 19 H 1.48501 * 109.46969 * 330.00237 * 16 14 12 20 20 C 1.39577 * 110.08899 * 0.02562 * 5 4 2 21 21 C 1.39669 * 129.32317 * 180.02562 * 20 5 4 22 22 C 1.37835 * 120.28254 * 179.97438 * 21 20 5 23 23 C 1.38298 * 120.23030 * 0.02562 * 22 21 20 24 24 C 1.38231 * 119.83516 * 359.97438 * 23 22 21 25 25 C 1.38173 * 120.14838 * 0.02890 * 24 23 22 26 26 H 1.09004 * 109.47164 * 297.55261 * 1 2 3 27 27 H 1.08993 * 109.47666 * 57.55761 * 1 2 3 28 28 H 1.09003 * 109.46765 * 177.56269 * 1 2 3 29 29 H 1.08997 * 109.46980 * 182.44638 * 3 2 1 30 30 H 1.08999 * 109.46972 * 302.44502 * 3 2 1 31 31 H 1.08996 * 109.47154 * 62.44107 * 3 2 1 32 32 H 1.09005 * 110.29812 * 359.84018 * 4 2 1 33 33 H 1.08994 * 110.30071 * 237.69530 * 4 2 1 34 34 H 1.08994 * 109.46982 * 300.00220 * 9 6 5 35 35 H 1.08999 * 109.46997 * 60.00051 * 9 6 5 36 36 H 1.09001 * 109.46797 * 300.00467 * 10 9 6 37 37 H 1.08999 * 109.46779 * 60.00144 * 10 9 6 38 38 H 1.08997 * 109.47199 * 299.99886 * 11 10 9 39 39 H 1.08999 * 109.47052 * 60.00382 * 11 10 9 40 40 H 0.97006 * 119.99514 * 180.02562 * 15 14 12 41 41 H 1.07999 * 119.85780 * 359.95631 * 21 20 5 42 42 H 1.07999 * 119.88316 * 179.72278 * 22 21 20 43 43 H 1.08005 * 120.08475 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.92756 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0651 1.4334 0.0000 4 6 2.0666 -0.7729 1.2160 5 7 2.8383 -1.8847 0.6541 6 16 3.6342 -3.0323 1.5438 7 8 2.9267 -3.0741 2.7754 8 8 3.6841 -4.1662 0.6888 9 6 5.2952 -2.3450 1.7869 10 6 6.1378 -3.3247 2.6063 11 6 7.5389 -2.7452 2.8109 12 6 8.3688 -3.7104 3.6173 13 1 7.9400 -4.6440 3.9503 14 6 9.6757 -3.4016 3.9301 15 7 10.1980 -2.2650 3.5242 16 14 10.7043 -4.5978 4.9305 17 1 11.4056 -5.5334 4.0149 18 1 11.7041 -3.8437 5.7285 19 1 9.8209 -5.3673 5.8430 20 6 2.8046 -1.8352 -0.7404 21 6 3.3982 -2.6909 -1.6710 22 6 3.2416 -2.4651 -3.0216 23 6 2.4956 -1.3887 -3.4658 24 6 1.9049 -0.5371 -2.5510 25 6 2.0590 -0.7593 -1.1960 26 1 -0.3634 0.4754 0.9111 27 1 -0.3634 0.5512 -0.8672 28 1 -0.3633 -1.0268 -0.0437 29 1 3.1540 1.4147 -0.0439 30 1 1.6757 1.9666 -0.8672 31 1 1.7468 1.9401 0.9110 32 1 1.2405 -1.1520 1.8177 33 1 2.7105 -0.1316 1.8177 34 1 5.7665 -2.1823 0.8178 35 1 5.2216 -1.3965 2.3190 36 1 5.6661 -3.4870 3.5755 37 1 6.2114 -4.2733 2.0746 38 1 8.0102 -2.5833 1.8415 39 1 7.4656 -1.7964 3.3423 40 1 11.1176 -2.0480 3.7440 41 1 3.9827 -3.5330 -1.3308 42 1 3.7072 -3.1284 -3.7356 43 1 2.3747 -1.2137 -4.5247 44 1 1.3223 0.3042 -2.8962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610711846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:40 Heat of formation + Delta-G solvation = -77.798788 kcal Electronic energy + Delta-G solvation = -25504.923288 eV Core-core repulsion = 21933.782206 eV Total energy + Delta-G solvation = -3571.141082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81107 -38.56758 -37.67987 -37.31317 -36.56135 -35.35761 -34.23421 -31.05370 -30.50404 -29.75697 -28.16855 -27.14947 -25.67833 -24.08511 -23.14784 -22.35405 -20.57630 -20.37729 -18.92783 -18.61772 -17.69643 -17.50264 -16.77225 -16.67195 -16.55012 -16.06174 -15.85769 -15.77663 -14.83193 -14.67191 -14.54052 -14.17848 -14.16352 -13.86769 -13.77741 -13.64176 -13.59258 -13.42287 -13.30163 -13.08120 -13.01433 -12.79872 -12.77012 -12.70404 -12.26778 -12.14883 -12.12966 -11.86306 -11.83819 -11.54579 -11.44385 -11.40129 -11.06133 -10.60651 -9.73851 -8.91245 -8.25476 -6.37034 -1.09831 0.45095 0.47347 1.31767 1.38927 1.39696 1.51174 2.37453 2.51926 2.80544 2.86992 3.08133 3.16312 3.46647 3.60565 3.74038 3.90498 3.96893 4.11255 4.25937 4.27153 4.33498 4.49912 4.53661 4.58047 4.62421 4.63723 4.78192 4.80882 4.85393 4.95717 4.97503 5.03042 5.08755 5.23780 5.33662 5.37488 5.40288 5.43461 5.52259 5.56031 5.63998 5.69154 5.74943 6.12848 6.15072 6.78039 7.32520 8.86115 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.003081 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.604692 B = 9085.449050 C = 9335.665184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 C -0.134 4.134 4 C 0.102 3.898 5 N -0.940 5.940 6 S 2.621 3.379 7 O -0.970 6.970 8 O -0.969 6.969 9 C -0.601 4.601 10 C -0.104 4.104 11 C 0.032 3.968 12 C -0.554 4.554 13 H 0.061 0.939 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.964 3.036 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.136 3.864 21 C -0.181 4.181 22 C -0.094 4.094 23 C -0.142 4.142 24 C -0.073 4.073 25 C -0.127 4.127 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.002 0.998 39 H 0.004 0.996 40 H 0.266 0.734 41 H 0.124 0.876 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.755 8.859 -13.182 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.024 4.024 3 C -0.191 4.191 4 C -0.021 4.021 5 N -0.764 5.764 6 S 2.720 3.280 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.733 4.733 10 C -0.144 4.144 11 C -0.006 4.006 12 C -0.592 4.592 13 H 0.079 0.921 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.188 1.188 20 C 0.040 3.960 21 C -0.202 4.202 22 C -0.112 4.112 23 C -0.161 4.161 24 C -0.092 4.092 25 C -0.131 4.131 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.979 8.071 -12.693 25.814 hybrid contribution 1.535 -0.363 0.652 1.707 sum -19.444 7.708 -12.041 24.134 Atomic orbital electron populations 1.21857 0.91208 1.02027 1.03910 1.20151 0.97361 0.95741 0.89183 1.21873 1.00767 0.92568 1.03899 1.22505 0.96057 0.86391 0.97142 1.56138 1.62617 1.44402 1.13213 1.04774 0.76962 0.73477 0.72767 1.93544 1.71190 1.86057 1.45307 1.93527 1.87489 1.48403 1.66567 1.30477 1.19682 1.12112 1.11005 1.21341 0.97357 0.97016 0.98665 1.18948 0.90323 0.95553 0.95779 1.21714 0.97794 1.05091 1.34582 0.92056 1.25949 0.99250 0.97207 0.97111 1.70073 1.15197 1.24400 1.47239 0.85457 0.78298 0.78684 0.78715 1.19688 1.20447 1.18824 1.18320 0.98695 0.97166 0.81838 1.21154 1.04516 1.00758 0.93807 1.21162 0.98061 0.98268 0.93759 1.21394 0.98679 0.95042 1.01002 1.20731 0.98677 0.99810 0.89957 1.20346 1.01134 0.96305 0.95333 0.90354 0.90232 0.93627 0.93178 0.90340 0.90346 0.89135 0.88341 0.84055 0.83385 0.91156 0.91329 0.97947 0.97718 0.92562 0.85839 0.83722 0.82692 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.39 71.98 0.60 -1.05 16 2 C -0.02 -0.37 1.03 -52.51 -0.05 -0.43 16 3 C -0.13 -1.64 8.39 71.98 0.60 -1.04 16 4 C 0.10 2.10 6.39 86.63 0.55 2.66 16 5 N -0.94 -24.96 3.40 -337.78 -1.15 -26.10 16 6 S 2.62 83.62 5.56 -56.49 -0.31 83.30 16 7 O -0.97 -34.96 17.56 -127.65 -2.24 -37.20 16 8 O -0.97 -35.66 15.25 -127.65 -1.95 -37.61 16 9 C -0.60 -19.41 6.18 71.98 0.44 -18.97 16 10 C -0.10 -4.34 5.16 30.59 0.16 -4.18 16 11 C 0.03 1.69 4.97 29.84 0.15 1.84 16 12 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 14 C 0.00 0.19 5.46 84.66 0.46 0.65 16 15 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 16 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.14 3.57 6.59 38.34 0.25 3.82 16 21 C -0.18 -4.87 9.37 22.52 0.21 -4.65 16 22 C -0.09 -1.93 10.02 22.19 0.22 -1.71 16 23 C -0.14 -2.27 10.06 22.28 0.22 -2.05 16 24 C -0.07 -1.17 10.04 22.25 0.22 -0.94 16 25 C -0.13 -2.56 4.87 -19.63 -0.10 -2.66 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.79 7.70 -2.38 -0.02 1.78 16 33 H 0.10 1.68 7.70 -2.39 -0.02 1.66 16 34 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 35 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.27 14.96 8.31 -92.70 -0.77 14.18 16 41 H 0.12 3.74 6.11 -2.91 -0.02 3.72 16 42 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -74.52 371.39 1.82 -72.70 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.97 Total: 14.43 kcal Atomic # 6 Polarization: -64.37 SS G_CDS: 4.19 Total: -60.18 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -0.86 Total: -81.73 kcal Atomic # 8 Polarization: -70.62 SS G_CDS: -4.19 Total: -74.81 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 83.62 SS G_CDS: -0.31 Total: 83.30 kcal Total: -74.52 1.82 -72.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610711846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.100 kcal (2) G-P(sol) polarization free energy of solvation -74.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds