Wall clock time and date at job start Tue Mar 31 2020 13:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48503 * 109.47366 * 240.00208 * 3 2 1 5 5 H 1.48496 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00662 * 3 2 1 7 7 C 1.40223 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00315 * 196.86114 * 7 2 1 9 9 C 1.41114 * 119.99843 * 16.85239 * 7 2 1 10 10 C 1.40891 * 120.09881 * 205.91554 * 9 7 2 11 11 C 1.36319 * 119.88622 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10946 * 359.97438 * 11 10 9 13 13 C 1.47646 * 119.89867 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99596 * 351.82063 * 13 12 11 15 15 N 1.34777 * 120.00263 * 171.81320 * 13 12 11 16 16 C 1.47068 * 136.05645 * 2.66714 * 15 13 12 17 17 C 1.53236 * 88.08305 * 207.20506 * 16 15 13 18 18 O 1.42897 * 114.50558 * 220.46139 * 17 16 15 19 19 C 1.35906 * 117.00011 * 251.87794 * 18 17 16 20 20 C 1.38737 * 120.05071 * 5.24746 * 19 18 17 21 21 C 1.38149 * 119.93980 * 179.74365 * 20 19 18 22 22 C 1.38264 * 120.05308 * 0.50814 * 21 20 19 23 23 C 1.38261 * 120.11455 * 359.77033 * 22 21 20 24 24 C 1.38144 * 120.05659 * 359.97406 * 23 22 21 25 25 C 1.47064 * 136.05716 * 183.04379 * 15 13 12 26 26 C 1.40017 * 120.20748 * 0.29284 * 12 11 10 27 27 C 1.36309 * 120.10448 * 359.44606 * 26 12 11 28 28 H 0.96994 * 120.00261 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.05836 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94546 * 180.02562 * 11 10 9 31 31 H 1.08997 * 113.46667 * 321.94062 * 16 15 13 32 32 H 1.09006 * 113.46475 * 92.37413 * 16 15 13 33 33 H 1.08993 * 114.01855 * 87.71786 * 17 16 15 34 34 H 1.07997 * 120.02985 * 0.02562 * 20 19 18 35 35 H 1.07996 * 119.97041 * 180.27383 * 21 20 19 36 36 H 1.08003 * 119.94257 * 179.74307 * 22 21 20 37 37 H 1.08001 * 119.97220 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.03042 * 179.97438 * 24 23 22 39 39 H 1.09004 * 113.46409 * 267.61933 * 25 15 13 40 40 H 1.08998 * 113.46999 * 37.99799 * 25 15 13 41 41 H 1.08003 * 119.94767 * 179.72623 * 26 12 11 42 42 H 1.08007 * 120.05392 * 180.25270 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0076 -1.2143 -0.0005 8 1 3.0528 -1.2345 0.2707 9 6 1.3475 -2.4100 -0.3554 10 6 1.8124 -3.6462 0.1354 11 6 1.1718 -4.7986 -0.2105 12 6 0.0534 -4.7552 -1.0516 13 6 -0.6373 -6.0062 -1.4229 14 8 -0.1523 -7.0802 -1.1237 15 7 -1.8055 -5.9577 -2.0934 16 6 -2.6592 -4.9017 -2.6582 17 6 -3.8567 -5.8382 -2.4654 18 8 -4.7985 -5.8249 -3.5400 19 6 -5.9953 -5.2255 -3.3042 20 6 -6.2179 -4.5671 -2.1035 21 6 -7.4334 -3.9541 -1.8684 22 6 -8.4312 -4.0054 -2.8242 23 6 -8.2137 -4.6659 -4.0193 24 6 -6.9982 -5.2759 -4.2614 25 6 -2.7907 -6.9370 -2.5764 26 6 -0.4089 -3.5296 -1.5464 27 6 0.2219 -2.3715 -1.2017 28 1 -0.4850 0.8400 0.0004 29 1 2.6748 -3.6806 0.7846 30 1 1.5270 -5.7466 0.1655 31 1 -2.7070 -4.0053 -2.0400 32 1 -2.4436 -4.6822 -3.7039 33 1 -4.3230 -5.7655 -1.4829 34 1 -5.4402 -4.5300 -1.3552 35 1 -7.6057 -3.4377 -0.9357 36 1 -9.3822 -3.5291 -2.6368 37 1 -8.9948 -4.7048 -4.7641 38 1 -6.8289 -5.7921 -5.1948 39 1 -2.6105 -7.2651 -3.6001 40 1 -2.9494 -7.7681 -1.8893 41 1 -1.2694 -3.5014 -2.1985 42 1 -0.1378 -1.4261 -1.5805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611148252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:29 Heat of formation + Delta-G solvation = 24.743065 kcal Electronic energy + Delta-G solvation = -25613.567697 eV Core-core repulsion = 21911.429212 eV Total energy + Delta-G solvation = -3702.138485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86345 -39.52199 -38.03612 -37.07431 -36.33112 -33.90838 -31.24517 -30.75454 -30.01385 -29.53159 -28.59386 -26.33358 -25.58527 -23.74371 -22.65745 -21.82079 -21.00347 -20.65547 -18.98664 -18.59824 -17.56337 -16.77281 -16.32949 -16.13092 -15.86487 -15.38537 -14.98311 -14.88513 -14.48344 -14.11604 -13.68166 -13.51243 -13.38483 -13.19202 -13.07243 -12.71359 -12.66418 -12.21467 -12.07141 -11.98350 -11.77249 -11.71806 -11.40815 -11.29271 -11.02290 -10.94062 -10.69558 -10.46964 -10.07885 -9.54021 -9.36111 -9.19570 -9.09152 -8.48119 -8.35928 -7.76662 -7.58300 -7.06926 -4.65034 1.14868 1.25539 2.16081 2.73722 2.89502 2.91996 2.95694 2.99079 3.38767 3.59310 3.70865 3.80138 4.13820 4.49216 4.54103 4.66503 4.77591 4.90107 4.99118 5.19076 5.21549 5.26977 5.43365 5.48429 5.50457 5.55327 5.63186 5.78835 5.84146 6.06544 6.14717 6.22476 6.26141 6.30791 6.34641 6.59301 6.73863 6.78888 6.99094 7.08455 7.25186 7.40109 7.61627 7.76608 7.81991 8.01834 8.15708 8.35534 8.58652 8.70693 8.90580 9.85316 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003067 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.796790 B = 9127.074644 C =11105.366818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.237 4.237 11 C -0.022 4.022 12 C -0.280 4.280 13 C 0.607 3.393 14 O -0.567 6.567 15 N -0.645 5.645 16 C 0.083 3.917 17 C 0.037 3.963 18 O -0.297 6.297 19 C 0.132 3.868 20 C -0.207 4.207 21 C -0.078 4.078 22 C -0.162 4.162 23 C -0.083 4.083 24 C -0.154 4.154 25 C 0.113 3.887 26 C -0.076 4.076 27 C -0.177 4.177 28 H 0.287 0.713 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.735 -2.998 -6.061 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.257 4.257 11 C -0.041 4.041 12 C -0.284 4.284 13 C 0.406 3.594 14 O -0.448 6.448 15 N -0.384 5.384 16 C -0.041 4.041 17 C -0.020 4.020 18 O -0.209 6.209 19 C 0.086 3.914 20 C -0.225 4.225 21 C -0.097 4.097 22 C -0.180 4.180 23 C -0.101 4.101 24 C -0.173 4.173 25 C -0.010 4.010 26 C -0.095 4.095 27 C -0.196 4.196 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.384 -3.515 -5.932 15.951 hybrid contribution 0.286 0.959 0.196 1.019 sum -14.098 -2.556 -5.736 15.434 Atomic orbital electron populations 1.69722 1.07898 1.30187 1.31741 1.26093 0.94839 1.01867 0.91886 0.86250 0.80202 0.79403 0.80366 1.18459 1.20011 1.18651 1.19830 0.98083 0.91088 1.37978 0.89712 1.17808 0.90415 0.92167 0.86999 1.20727 1.04609 0.92702 1.07640 1.20353 0.92694 0.97175 0.93884 1.18750 1.04283 0.90706 1.14662 1.18224 0.76366 0.89893 0.74918 1.90662 1.64864 1.31973 1.57304 1.49009 1.22141 1.09620 1.57596 1.23597 0.86049 0.93995 1.00456 1.24460 0.87372 0.99181 0.90986 1.86113 1.22803 1.73154 1.38805 1.19052 0.85417 0.92881 0.94018 1.21379 0.99814 1.03485 0.97855 1.20996 0.92505 0.97082 0.99077 1.21073 0.99711 1.02506 0.94694 1.20957 0.96073 0.96068 0.97045 1.20451 0.92343 1.04702 0.99757 1.22913 0.83828 0.93413 1.00882 1.21025 0.97923 0.92450 0.98096 1.20974 0.99949 0.96819 1.01893 0.90152 0.88260 0.88087 0.88535 0.88995 0.86698 0.85014 0.85703 0.86026 0.85504 0.85239 0.89316 0.89820 0.87892 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.23 10.98 55.56 0.61 -17.62 16 2 C 0.07 1.71 5.15 -17.31 -0.09 1.63 16 3 Si 0.91 17.09 29.59 -169.99 -5.03 12.06 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 5 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 7 C -0.44 -10.89 9.04 -37.75 -0.34 -11.23 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.13 3.27 5.56 -106.80 -0.59 2.68 16 10 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 11 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 12 C -0.28 -6.45 5.89 -104.73 -0.62 -7.07 16 13 C 0.61 13.27 7.99 -12.42 -0.10 13.17 16 14 O -0.57 -13.85 17.13 5.29 0.09 -13.76 16 15 N -0.65 -11.22 3.68 -186.61 -0.69 -11.90 16 16 C 0.08 1.17 6.29 -8.64 -0.05 1.11 16 17 C 0.04 0.45 4.03 -26.35 -0.11 0.35 16 18 O -0.30 -3.59 10.20 -19.44 -0.20 -3.79 16 19 C 0.13 1.51 6.68 -39.22 -0.26 1.25 16 20 C -0.21 -2.26 9.03 -39.43 -0.36 -2.61 16 21 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 22 C -0.16 -1.42 10.04 -39.56 -0.40 -1.82 16 23 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 24 C -0.15 -1.55 9.99 -39.44 -0.39 -1.95 16 25 C 0.11 1.54 8.46 -8.51 -0.07 1.47 16 26 C -0.08 -1.70 9.09 -39.61 -0.36 -2.06 16 27 C -0.18 -4.31 8.62 -39.28 -0.34 -4.64 16 28 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 29 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.10 2.30 7.65 -52.49 -0.40 1.90 16 31 H 0.10 1.40 6.19 -51.93 -0.32 1.08 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.12 1.29 5.94 -51.93 -0.31 0.99 16 34 H 0.13 1.37 5.90 -52.49 -0.31 1.06 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.10 1.97 3.87 -52.48 -0.20 1.77 16 42 H 0.12 2.93 6.22 -52.48 -0.33 2.60 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -29.16 354.78 -10.31 -39.47 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.80 Total: 9.18 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -5.64 Total: -19.00 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: -0.08 Total: -29.52 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.11 Total: -17.54 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.16 -10.31 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611148252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.214 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds