Wall clock time and date at job start Tue Mar 31 2020 13:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48503 * 109.47366 * 240.00208 * 3 2 1 5 5 H 1.48496 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00662 * 3 2 1 7 7 C 1.40223 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00315 * 196.86114 * 7 2 1 9 9 C 1.41114 * 119.99843 * 16.85239 * 7 2 1 10 10 C 1.40891 * 120.09881 * 205.91554 * 9 7 2 11 11 C 1.36319 * 119.88622 * 180.02562 * 10 9 7 12 12 C 1.40007 * 120.10946 * 359.97438 * 11 10 9 13 13 C 1.47646 * 119.89867 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99596 * 351.82063 * 13 12 11 15 15 N 1.34777 * 120.00263 * 171.81320 * 13 12 11 16 16 C 1.47068 * 136.05645 * 2.66714 * 15 13 12 17 17 C 1.53236 * 88.08305 * 207.20506 * 16 15 13 18 18 O 1.42897 * 114.50558 * 220.46139 * 17 16 15 19 19 C 1.35906 * 117.00011 * 251.87794 * 18 17 16 20 20 C 1.38737 * 120.05071 * 5.24746 * 19 18 17 21 21 C 1.38149 * 119.93980 * 179.74365 * 20 19 18 22 22 C 1.38264 * 120.05308 * 0.50814 * 21 20 19 23 23 C 1.38261 * 120.11455 * 359.77033 * 22 21 20 24 24 C 1.38144 * 120.05659 * 359.97406 * 23 22 21 25 25 C 1.47064 * 136.05716 * 183.04379 * 15 13 12 26 26 C 1.40017 * 120.20748 * 0.29284 * 12 11 10 27 27 C 1.36309 * 120.10448 * 359.44606 * 26 12 11 28 28 H 0.96994 * 120.00261 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.05836 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.94546 * 180.02562 * 11 10 9 31 31 H 1.08997 * 113.46667 * 321.94062 * 16 15 13 32 32 H 1.09006 * 113.46475 * 92.37413 * 16 15 13 33 33 H 1.08993 * 114.01855 * 87.71786 * 17 16 15 34 34 H 1.07997 * 120.02985 * 0.02562 * 20 19 18 35 35 H 1.07996 * 119.97041 * 180.27383 * 21 20 19 36 36 H 1.08003 * 119.94257 * 179.74307 * 22 21 20 37 37 H 1.08001 * 119.97220 * 179.97438 * 23 22 21 38 38 H 1.07995 * 120.03042 * 179.97438 * 24 23 22 39 39 H 1.09004 * 113.46409 * 267.61933 * 25 15 13 40 40 H 1.08998 * 113.46999 * 37.99799 * 25 15 13 41 41 H 1.08003 * 119.94767 * 179.72623 * 26 12 11 42 42 H 1.08007 * 120.05392 * 180.25270 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0076 -1.2143 -0.0005 8 1 3.0528 -1.2345 0.2707 9 6 1.3475 -2.4100 -0.3554 10 6 1.8124 -3.6462 0.1354 11 6 1.1718 -4.7986 -0.2105 12 6 0.0534 -4.7552 -1.0516 13 6 -0.6373 -6.0062 -1.4229 14 8 -0.1523 -7.0802 -1.1237 15 7 -1.8055 -5.9577 -2.0934 16 6 -2.6592 -4.9017 -2.6582 17 6 -3.8567 -5.8382 -2.4654 18 8 -4.7985 -5.8249 -3.5400 19 6 -5.9953 -5.2255 -3.3042 20 6 -6.2179 -4.5671 -2.1035 21 6 -7.4334 -3.9541 -1.8684 22 6 -8.4312 -4.0054 -2.8242 23 6 -8.2137 -4.6659 -4.0193 24 6 -6.9982 -5.2759 -4.2614 25 6 -2.7907 -6.9370 -2.5764 26 6 -0.4089 -3.5296 -1.5464 27 6 0.2219 -2.3715 -1.2017 28 1 -0.4850 0.8400 0.0004 29 1 2.6748 -3.6806 0.7846 30 1 1.5270 -5.7466 0.1655 31 1 -2.7070 -4.0053 -2.0400 32 1 -2.4436 -4.6822 -3.7039 33 1 -4.3230 -5.7655 -1.4829 34 1 -5.4402 -4.5300 -1.3552 35 1 -7.6057 -3.4377 -0.9357 36 1 -9.3822 -3.5291 -2.6368 37 1 -8.9948 -4.7048 -4.7641 38 1 -6.8289 -5.7921 -5.1948 39 1 -2.6105 -7.2651 -3.6001 40 1 -2.9494 -7.7681 -1.8893 41 1 -1.2694 -3.5014 -2.1985 42 1 -0.1378 -1.4261 -1.5805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611148252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:28 Heat of formation + Delta-G solvation = 10.253284 kcal Electronic energy + Delta-G solvation = -25614.196021 eV Core-core repulsion = 21911.429212 eV Total energy + Delta-G solvation = -3702.766809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98930 -40.67415 -39.45516 -38.62511 -37.50898 -35.69201 -32.48830 -31.92691 -31.38020 -30.97589 -29.91190 -27.76324 -27.06376 -24.84482 -23.53254 -23.16513 -22.80710 -21.85801 -20.36145 -19.56462 -19.35708 -18.19520 -17.67340 -17.29440 -16.94156 -16.69545 -16.19193 -16.11576 -15.66643 -15.45395 -15.10277 -14.88956 -14.59331 -14.48078 -14.31243 -14.20055 -13.79239 -13.69377 -13.60205 -13.33472 -13.03411 -12.87886 -12.75970 -12.62746 -12.44480 -12.38278 -11.82679 -11.73604 -11.63906 -11.24497 -11.09753 -10.78329 -9.93925 -9.90197 -9.61392 -9.42092 -9.16135 -8.80878 -6.51303 0.37987 0.42256 0.50153 1.11453 1.38153 1.43018 1.51510 1.56044 1.99539 2.15988 2.34681 2.74375 2.83187 3.08512 3.53358 3.63815 3.74534 3.92097 4.00183 4.05571 4.18438 4.31791 4.38890 4.39735 4.42591 4.45200 4.53392 4.54378 4.72466 4.74977 4.86624 4.92722 5.01644 5.12357 5.14860 5.26245 5.39049 5.52306 5.56615 5.64137 5.79076 5.87083 5.92838 5.97024 6.18847 6.39841 6.50934 6.61266 6.74193 6.85458 7.23662 8.14415 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003067 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.796790 B = 9127.074644 C =11105.366818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.251 4.251 11 C -0.032 4.032 12 C -0.291 4.291 13 C 0.605 3.395 14 O -0.601 6.601 15 N -0.650 5.650 16 C 0.077 3.923 17 C 0.061 3.939 18 O -0.300 6.300 19 C 0.107 3.893 20 C -0.221 4.221 21 C -0.090 4.090 22 C -0.162 4.162 23 C -0.083 4.083 24 C -0.162 4.162 25 C 0.111 3.889 26 C -0.068 4.068 27 C -0.196 4.196 28 H 0.298 0.702 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -1.946 -7.047 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.271 4.271 11 C -0.052 4.052 12 C -0.296 4.296 13 C 0.403 3.597 14 O -0.486 6.486 15 N -0.386 5.386 16 C -0.045 4.045 17 C 0.003 3.997 18 O -0.212 6.212 19 C 0.062 3.938 20 C -0.240 4.240 21 C -0.108 4.108 22 C -0.180 4.180 23 C -0.101 4.101 24 C -0.181 4.181 25 C -0.012 4.012 26 C -0.086 4.086 27 C -0.215 4.215 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.150 0.850 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.522 -2.467 -6.942 18.090 hybrid contribution 0.747 0.594 0.453 1.056 sum -15.775 -1.873 -6.489 17.160 Atomic orbital electron populations 1.69743 1.09192 1.31740 1.31335 1.26918 0.95582 1.04773 0.90819 0.85155 0.78866 0.74973 0.80276 1.18295 1.18684 1.18279 1.20108 0.98458 0.92068 1.39289 0.89567 1.18156 0.91273 0.92902 0.87747 1.20875 1.05202 0.92770 1.08204 1.20504 0.93217 0.97143 0.94303 1.19040 1.04300 0.91851 1.14379 1.17942 0.77495 0.88797 0.75514 1.90630 1.66283 1.32670 1.58984 1.48879 1.21106 1.12453 1.56129 1.23799 0.86277 0.93607 1.00846 1.24094 0.86912 0.97059 0.91619 1.86085 1.23151 1.73554 1.38457 1.19297 0.85481 0.94028 0.94946 1.21492 1.00523 1.04117 0.97843 1.21280 0.92347 0.97061 1.00096 1.21441 1.00382 1.01828 0.94322 1.21333 0.96141 0.94996 0.97626 1.20728 0.92557 1.04896 0.99921 1.23146 0.82874 0.93452 1.01694 1.21281 0.98214 0.91465 0.97669 1.21001 1.00564 0.97235 1.02697 0.89113 0.87539 0.87841 0.88901 0.87613 0.85769 0.85178 0.84303 0.83639 0.82730 0.84243 0.87766 0.89216 0.84970 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.61 10.98 21.87 0.24 -37.37 16 2 C 0.04 1.76 5.15 85.35 0.44 2.20 16 3 Si 0.99 34.41 29.59 68.60 2.03 36.45 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 5 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.47 -23.72 9.04 23.46 0.21 -23.50 16 8 H 0.09 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.10 5.33 5.56 -21.28 -0.12 5.21 16 10 C -0.25 -12.52 9.73 22.47 0.22 -12.31 16 11 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 12 C -0.29 -13.67 5.89 -19.93 -0.12 -13.79 16 13 C 0.60 26.61 7.99 86.73 0.69 27.30 16 14 O -0.60 -29.79 17.13 -3.98 -0.07 -29.86 16 15 N -0.65 -22.08 3.68 -863.05 -3.18 -25.27 16 16 C 0.08 2.08 6.29 83.09 0.52 2.60 16 17 C 0.06 1.38 4.03 30.84 0.12 1.51 16 18 O -0.30 -6.76 10.20 -92.49 -0.94 -7.70 16 19 C 0.11 2.30 6.68 22.51 0.15 2.45 16 20 C -0.22 -4.54 9.03 22.37 0.20 -4.34 16 21 C -0.09 -1.57 10.04 22.25 0.22 -1.34 16 22 C -0.16 -2.39 10.04 22.28 0.22 -2.17 16 23 C -0.08 -1.21 10.04 22.25 0.22 -0.98 16 24 C -0.16 -2.94 9.99 22.36 0.22 -2.72 16 25 C 0.11 2.85 8.46 83.18 0.70 3.55 16 26 C -0.07 -3.04 9.09 22.25 0.20 -2.84 16 27 C -0.20 -9.71 8.62 22.47 0.19 -9.52 16 28 H 0.30 12.48 8.29 -92.71 -0.77 11.71 16 29 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.10 4.88 7.65 -2.91 -0.02 4.86 16 31 H 0.09 2.59 6.19 -2.39 -0.01 2.57 16 32 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.12 2.63 5.94 -2.39 -0.01 2.62 16 34 H 0.13 2.59 5.90 -2.91 -0.02 2.57 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.13 4.99 3.87 -2.91 -0.01 4.98 16 42 H 0.11 5.67 6.22 -2.91 -0.02 5.65 16 Total: -1.00 -63.71 354.78 3.67 -60.05 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 1.06 Total: 33.75 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.53 Total: -30.04 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -2.94 Total: -62.64 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.01 Total: -37.57 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.45 kcal Total: -63.71 3.67 -60.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611148252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.302 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds