Wall clock time and date at job start Tue Mar 31 2020 13:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86791 * 120.00095 * 2 1 4 4 H 1.48499 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47304 * 299.99464 * 3 2 1 6 6 H 1.48507 * 109.47080 * 59.99400 * 3 2 1 7 7 C 1.39948 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99257 * 162.22070 * 7 2 1 9 9 C 1.41394 * 120.00542 * 342.22158 * 7 2 1 10 10 C 1.40732 * 120.23971 * 335.28075 * 9 7 2 11 11 C 1.37605 * 119.74256 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24916 * 359.72416 * 11 10 9 13 13 C 1.38614 * 120.49799 * 0.55599 * 12 11 10 14 14 S 1.76200 * 119.87766 * 179.72664 * 13 12 11 15 15 O 1.42089 * 106.40789 * 156.18130 * 14 13 12 16 16 O 1.42109 * 106.40071 * 23.25846 * 14 13 12 17 17 N 1.65605 * 107.21626 * 269.72495 * 14 13 12 18 18 C 1.46498 * 120.00156 * 64.99497 * 17 14 13 19 19 C 1.50473 * 109.62963 * 95.96738 * 18 17 14 20 20 C 1.54067 * 112.49739 * 213.86129 * 19 18 17 21 21 C 1.54065 * 112.81673 * 318.27578 * 20 19 18 22 22 C 1.50477 * 112.49919 * 318.28831 * 21 20 19 23 23 C 1.54241 * 108.51277 * 94.15249 * 22 21 20 24 24 C 1.45538 * 112.40975 * 280.00616 * 23 22 21 25 25 C 1.37647 * 120.25055 * 359.44266 * 13 12 11 26 26 H 0.96998 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.13451 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.87478 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.75166 * 180.29594 * 12 11 10 30 30 H 0.96999 * 119.99859 * 245.00241 * 17 14 13 31 31 H 1.09000 * 109.78272 * 335.48100 * 18 17 14 32 32 H 1.09001 * 108.87128 * 334.63522 * 19 18 17 33 33 H 1.08996 * 108.87717 * 93.17561 * 19 18 17 34 34 H 1.09007 * 108.80928 * 197.42281 * 20 19 18 35 35 H 1.08998 * 108.81607 * 79.14097 * 20 19 18 36 36 H 1.09001 * 108.87909 * 197.51305 * 21 20 19 37 37 H 1.09001 * 108.87696 * 79.06994 * 21 20 19 38 38 H 1.08995 * 109.63030 * 213.86173 * 22 21 20 39 39 H 1.08995 * 109.62715 * 334.25271 * 22 21 20 40 40 H 1.09004 * 108.89221 * 40.75753 * 23 22 21 41 41 H 1.09001 * 108.89401 * 159.24170 * 23 22 21 42 42 H 1.09001 * 108.89217 * 182.69022 * 24 23 22 43 43 H 1.09000 * 108.89258 * 301.17601 * 24 23 22 44 44 H 1.07997 * 120.12588 * 180.25625 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8833 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2851 9 6 1.3516 -2.4072 0.3749 10 6 0.2235 -2.3630 1.2151 11 6 -0.4070 -3.5324 1.5735 12 6 0.0618 -4.7505 1.1055 13 6 1.1755 -4.8063 0.2821 14 16 1.7615 -6.3637 -0.2974 15 8 2.4873 -6.1008 -1.4903 16 8 0.6559 -7.2548 -0.2406 17 7 2.8637 -6.9151 0.8088 18 6 2.4326 -7.2490 2.1685 19 6 2.1669 -8.7269 2.2660 20 6 1.0129 -9.0559 3.2322 21 6 1.0551 -8.2141 4.5219 22 6 2.4495 -8.0670 5.0682 23 6 3.0497 -6.7517 4.5308 24 6 3.5478 -6.8844 3.1698 25 6 1.8219 -3.6492 -0.0893 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1456 -1.4150 1.5779 28 1 -1.2732 -3.5009 2.2178 29 1 -0.4421 -5.6630 1.3879 30 1 3.7947 -7.0169 0.5564 31 1 1.5255 -6.6968 2.4140 32 1 1.9164 -9.1061 1.2753 33 1 3.0709 -9.2254 2.6158 34 1 1.0682 -10.1112 3.4994 35 1 0.0660 -8.8733 2.7241 36 1 0.4297 -8.6923 5.2758 37 1 0.6531 -7.2234 4.3097 38 1 2.4147 -8.0357 6.1571 39 1 3.0600 -8.9103 4.7454 40 1 2.2815 -5.9787 4.5517 41 1 3.8713 -6.4478 5.1794 42 1 4.0003 -5.9405 2.8659 43 1 4.3106 -7.6627 3.1474 44 1 2.6870 -3.6947 -0.7342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619472900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:24 Heat of formation + Delta-G solvation = -82.821746 kcal Electronic energy + Delta-G solvation = -26085.269088 eV Core-core repulsion = 22513.910194 eV Total energy + Delta-G solvation = -3571.358894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.19631 -37.64023 -36.59861 -35.26401 -34.55643 -33.84867 -32.46138 -30.08680 -29.86907 -29.78799 -25.50174 -24.65635 -24.12037 -21.91009 -21.07516 -20.72747 -19.42318 -19.02087 -17.90382 -16.89870 -16.51607 -15.92432 -15.21864 -15.17232 -14.81680 -14.74105 -14.52691 -13.90845 -13.76568 -13.47325 -13.34408 -13.05907 -12.60092 -12.54267 -12.27859 -11.94695 -11.81580 -11.55007 -11.51506 -11.40388 -11.34728 -11.14424 -11.05206 -10.90017 -10.87615 -10.73567 -10.58973 -10.45100 -10.39085 -10.11739 -9.78972 -9.66598 -9.36201 -9.13161 -8.04000 -7.70691 -6.93058 -4.54079 1.05436 2.19764 2.61945 2.99785 3.03177 3.06291 3.58273 3.82609 4.25119 4.43496 4.53043 4.65096 4.84788 5.03009 5.09214 5.15238 5.21140 5.34111 5.36723 5.40752 5.48219 5.57462 5.76897 5.87824 5.93385 6.04112 6.08311 6.14049 6.16231 6.19284 6.25288 6.30186 6.31764 6.40794 6.47995 6.65220 6.75441 6.84938 7.02804 7.20324 7.27672 7.38167 7.71671 7.80044 7.93691 8.39588 8.66411 8.71278 10.02718 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.003972 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.991669 B = 7048.350021 C = 7651.596110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.149 4.149 13 C -0.631 4.631 14 S 2.686 3.314 15 O -0.975 6.975 16 O -0.973 6.973 17 N -1.118 6.118 18 C 0.158 3.842 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.125 4.125 26 H 0.283 0.717 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.412 0.588 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -11.265 9.290 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.170 4.170 13 C -0.722 4.722 14 S 2.782 3.218 15 O -0.965 6.965 16 O -0.963 6.963 17 N -0.874 5.874 18 C 0.051 3.949 19 C -0.173 4.173 20 C -0.154 4.154 21 C -0.163 4.163 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.146 4.146 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.245 0.755 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.969 -11.549 8.531 14.897 hybrid contribution 0.561 1.455 0.288 1.585 sum 4.530 -10.095 8.819 14.149 Atomic orbital electron populations 1.69789 1.07678 1.29553 1.34814 1.25937 0.94770 1.01564 0.92055 0.86206 0.81015 0.80574 0.78685 1.18238 1.19826 1.19608 1.19641 0.98378 0.91004 1.39969 0.89917 1.17681 0.91818 0.92015 0.89644 1.21630 0.97605 0.97089 0.97426 1.20806 0.99311 0.93174 1.00703 1.20083 0.97307 0.97411 1.02225 1.29750 1.09038 1.17947 1.15506 1.01766 0.72935 0.74521 0.72584 1.93534 1.72849 1.86301 1.43818 1.93516 1.52463 1.63867 1.86415 1.55739 1.23906 1.82997 1.24760 1.20449 0.98096 0.95670 0.80671 1.21887 0.98874 0.96079 1.00465 1.21866 0.99007 0.99358 0.95184 1.21419 0.97080 1.00996 0.96835 1.21360 0.96660 0.97812 0.99686 1.20467 1.01266 0.97979 0.96049 1.20759 0.97854 1.02632 0.94853 1.20748 1.01074 0.91739 1.01058 0.90598 0.85809 0.88422 0.87647 0.75478 0.88998 0.90885 0.91914 0.92285 0.91499 0.92382 0.91619 0.92160 0.91654 0.91462 0.92007 0.90967 0.91820 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 10.97 55.55 0.61 -19.15 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 8 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 9 C 0.09 2.36 5.57 -106.83 -0.60 1.77 16 10 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 11 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 12 C -0.15 -3.19 8.94 -39.29 -0.35 -3.54 16 13 C -0.63 -13.72 5.82 -39.66 -0.23 -13.95 16 14 S 2.69 50.60 5.65 -107.50 -0.61 49.99 16 15 O -0.97 -20.85 17.27 -57.17 -0.99 -21.84 16 16 O -0.97 -19.73 16.95 -57.17 -0.97 -20.70 16 17 N -1.12 -15.86 5.34 -5.42 -0.03 -15.89 16 18 C 0.16 2.04 2.33 -68.55 -0.16 1.88 16 19 C -0.13 -1.55 5.05 -27.44 -0.14 -1.69 16 20 C -0.12 -1.24 5.85 -25.62 -0.15 -1.39 16 21 C -0.13 -1.24 5.31 -27.44 -0.15 -1.39 16 22 C -0.12 -1.05 5.60 -27.34 -0.15 -1.21 16 23 C -0.12 -1.20 5.26 -29.60 -0.16 -1.35 16 24 C -0.12 -1.32 4.83 -29.60 -0.14 -1.46 16 25 C -0.12 -3.00 9.26 -38.87 -0.36 -3.36 16 26 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 27 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 28 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 29 H 0.11 2.04 7.59 -52.49 -0.40 1.64 16 30 H 0.41 4.83 8.85 -34.47 -0.30 4.52 16 31 H 0.09 1.31 6.12 -51.93 -0.32 0.99 16 32 H 0.07 0.94 7.87 -51.93 -0.41 0.54 16 33 H 0.06 0.61 6.63 -51.93 -0.34 0.27 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.72 6.63 -51.93 -0.34 0.37 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.55 6.99 -51.93 -0.36 0.19 16 40 H 0.07 0.75 7.47 -51.93 -0.39 0.36 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 43 H 0.06 0.59 7.47 -51.93 -0.39 0.20 16 44 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -29.90 356.34 -11.88 -41.78 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.49 Total: 9.90 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: -3.75 Total: -42.42 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.58 Total: -35.04 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.96 Total: -42.54 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.61 Total: 49.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.90 -11.88 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.044 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds