Wall clock time and date at job start Tue Mar 31 2020 13:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86791 * 120.00095 * 2 1 4 4 H 1.48499 * 109.47285 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47304 * 299.99464 * 3 2 1 6 6 H 1.48507 * 109.47080 * 59.99400 * 3 2 1 7 7 C 1.39948 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99257 * 162.22070 * 7 2 1 9 9 C 1.41394 * 120.00542 * 342.22158 * 7 2 1 10 10 C 1.40732 * 120.23971 * 335.28075 * 9 7 2 11 11 C 1.37605 * 119.74256 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24916 * 359.72416 * 11 10 9 13 13 C 1.38614 * 120.49799 * 0.55599 * 12 11 10 14 14 S 1.76200 * 119.87766 * 179.72664 * 13 12 11 15 15 O 1.42089 * 106.40789 * 156.18130 * 14 13 12 16 16 O 1.42109 * 106.40071 * 23.25846 * 14 13 12 17 17 N 1.65605 * 107.21626 * 269.72495 * 14 13 12 18 18 C 1.46498 * 120.00156 * 64.99497 * 17 14 13 19 19 C 1.50473 * 109.62963 * 95.96738 * 18 17 14 20 20 C 1.54067 * 112.49739 * 213.86129 * 19 18 17 21 21 C 1.54065 * 112.81673 * 318.27578 * 20 19 18 22 22 C 1.50477 * 112.49919 * 318.28831 * 21 20 19 23 23 C 1.54241 * 108.51277 * 94.15249 * 22 21 20 24 24 C 1.45538 * 112.40975 * 280.00616 * 23 22 21 25 25 C 1.37647 * 120.25055 * 359.44266 * 13 12 11 26 26 H 0.96998 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.13451 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.87478 * 180.02562 * 11 10 9 29 29 H 1.07996 * 119.75166 * 180.29594 * 12 11 10 30 30 H 0.96999 * 119.99859 * 245.00241 * 17 14 13 31 31 H 1.09000 * 109.78272 * 335.48100 * 18 17 14 32 32 H 1.09001 * 108.87128 * 334.63522 * 19 18 17 33 33 H 1.08996 * 108.87717 * 93.17561 * 19 18 17 34 34 H 1.09007 * 108.80928 * 197.42281 * 20 19 18 35 35 H 1.08998 * 108.81607 * 79.14097 * 20 19 18 36 36 H 1.09001 * 108.87909 * 197.51305 * 21 20 19 37 37 H 1.09001 * 108.87696 * 79.06994 * 21 20 19 38 38 H 1.08995 * 109.63030 * 213.86173 * 22 21 20 39 39 H 1.08995 * 109.62715 * 334.25271 * 22 21 20 40 40 H 1.09004 * 108.89221 * 40.75753 * 23 22 21 41 41 H 1.09001 * 108.89401 * 159.24170 * 23 22 21 42 42 H 1.09001 * 108.89217 * 182.69022 * 24 23 22 43 43 H 1.09000 * 108.89258 * 301.17601 * 24 23 22 44 44 H 1.07997 * 120.12588 * 180.25625 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8833 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2851 9 6 1.3516 -2.4072 0.3749 10 6 0.2235 -2.3630 1.2151 11 6 -0.4070 -3.5324 1.5735 12 6 0.0618 -4.7505 1.1055 13 6 1.1755 -4.8063 0.2821 14 16 1.7615 -6.3637 -0.2974 15 8 2.4873 -6.1008 -1.4903 16 8 0.6559 -7.2548 -0.2406 17 7 2.8637 -6.9151 0.8088 18 6 2.4326 -7.2490 2.1685 19 6 2.1669 -8.7269 2.2660 20 6 1.0129 -9.0559 3.2322 21 6 1.0551 -8.2141 4.5219 22 6 2.4495 -8.0670 5.0682 23 6 3.0497 -6.7517 4.5308 24 6 3.5478 -6.8844 3.1698 25 6 1.8219 -3.6492 -0.0893 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1456 -1.4150 1.5779 28 1 -1.2732 -3.5009 2.2178 29 1 -0.4421 -5.6630 1.3879 30 1 3.7947 -7.0169 0.5564 31 1 1.5255 -6.6968 2.4140 32 1 1.9164 -9.1061 1.2753 33 1 3.0709 -9.2254 2.6158 34 1 1.0682 -10.1112 3.4994 35 1 0.0660 -8.8733 2.7241 36 1 0.4297 -8.6923 5.2758 37 1 0.6531 -7.2234 4.3097 38 1 2.4147 -8.0357 6.1571 39 1 3.0600 -8.9103 4.7454 40 1 2.2815 -5.9787 4.5517 41 1 3.8713 -6.4478 5.1794 42 1 4.0003 -5.9405 2.8659 43 1 4.3106 -7.6627 3.1474 44 1 2.6870 -3.6947 -0.7342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619472900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:24 Heat of formation + Delta-G solvation = -100.737538 kcal Electronic energy + Delta-G solvation = -26086.045975 eV Core-core repulsion = 22513.910194 eV Total energy + Delta-G solvation = -3572.135781 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11015 -39.45131 -38.22532 -36.90426 -35.69432 -35.58442 -33.29162 -31.93290 -31.60469 -30.85119 -27.36625 -25.47470 -25.05396 -23.68795 -22.83644 -21.70410 -20.58698 -20.28684 -19.55282 -18.39744 -17.72978 -17.63315 -16.86787 -16.56817 -16.31906 -15.86682 -15.54577 -15.27317 -15.09580 -14.81595 -14.66352 -14.32858 -13.91275 -13.74041 -13.60126 -13.28762 -13.21676 -13.18057 -13.07798 -13.04643 -12.88391 -12.84083 -12.59992 -12.21282 -12.08191 -11.90134 -11.55945 -11.52620 -11.34926 -11.24098 -11.21592 -11.15676 -10.95552 -10.37526 -9.85971 -9.57112 -8.74305 -6.46495 -0.49007 0.39477 0.82640 1.36967 1.43971 1.52436 2.12682 2.18009 2.53771 2.78579 3.46446 3.50480 3.65825 3.81166 4.05272 4.21975 4.26307 4.29638 4.35900 4.42148 4.50245 4.52334 4.57434 4.61976 4.82779 4.88953 5.00017 5.04166 5.06409 5.13173 5.19417 5.27791 5.32419 5.37838 5.39879 5.41624 5.43392 5.50521 5.54881 5.56292 5.65409 5.87056 5.92477 6.08891 6.18318 6.51289 6.78665 6.83418 8.24245 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.003972 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.991669 B = 7048.350021 C = 7651.596110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.064 3.936 10 C -0.139 4.139 11 C -0.121 4.121 12 C -0.147 4.147 13 C -0.637 4.637 14 S 2.714 3.286 15 O -1.000 7.000 16 O -0.983 6.983 17 N -1.100 6.100 18 C 0.149 3.851 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.146 4.146 26 H 0.292 0.708 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.426 0.574 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.491 -12.446 10.749 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.061 3.939 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.726 4.726 14 S 2.807 3.193 15 O -0.990 6.990 16 O -0.973 6.973 17 N -0.862 5.862 18 C 0.043 3.957 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.164 4.164 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.167 4.167 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.263 0.737 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.843 -12.716 9.997 16.885 hybrid contribution 0.248 1.665 -0.127 1.689 sum 5.091 -11.051 9.870 15.667 Atomic orbital electron populations 1.69827 1.09049 1.30974 1.35161 1.26779 0.95517 1.04626 0.90972 0.85116 0.79445 0.75867 0.79077 1.18064 1.19162 1.18490 1.19898 0.98629 0.92261 1.41913 0.90185 1.18034 0.92653 0.92909 0.90346 1.21636 0.98238 0.97608 0.98417 1.21132 0.99753 0.92630 1.00521 1.20432 0.96928 0.98070 1.01322 1.30245 1.08762 1.19085 1.14505 1.00934 0.72856 0.73232 0.72303 1.93494 1.73278 1.86430 1.45823 1.93500 1.53726 1.63355 1.86741 1.55347 1.24029 1.81898 1.24886 1.20706 0.98435 0.96652 0.79948 1.21891 1.00396 0.94873 1.00157 1.21882 0.97721 1.00680 0.95203 1.21427 0.98087 1.00048 0.96791 1.21343 0.95889 0.97380 1.00406 1.20482 1.01298 0.98317 0.95840 1.20754 0.97481 1.02907 0.94539 1.20820 1.01756 0.92225 1.01949 0.89732 0.86896 0.85567 0.85329 0.73710 0.90620 0.92295 0.89417 0.90402 0.93268 0.91148 0.93268 0.90882 0.90438 0.93233 0.90642 0.92007 0.89453 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.01 10.97 21.83 0.24 -41.77 16 2 C 0.04 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 37.16 29.59 68.60 2.03 39.19 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 7 C -0.50 -26.45 9.05 23.46 0.21 -26.24 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 9 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 10 C -0.14 -7.08 8.70 22.73 0.20 -6.88 16 11 C -0.12 -5.39 10.02 22.22 0.22 -5.17 16 12 C -0.15 -6.26 8.94 22.46 0.20 -6.06 16 13 C -0.64 -28.01 5.82 22.22 0.13 -27.88 16 14 S 2.71 101.35 5.65 -56.49 -0.32 101.03 16 15 O -1.00 -42.82 17.27 -128.00 -2.21 -45.03 16 16 O -0.98 -39.14 16.95 -128.00 -2.17 -41.31 16 17 N -1.10 -29.97 5.34 -171.06 -0.91 -30.88 16 18 C 0.15 3.61 2.33 44.59 0.10 3.71 16 19 C -0.13 -2.80 5.05 30.14 0.15 -2.65 16 20 C -0.12 -2.26 5.85 31.32 0.18 -2.08 16 21 C -0.13 -2.23 5.31 30.14 0.16 -2.07 16 22 C -0.11 -1.68 5.60 30.20 0.17 -1.51 16 23 C -0.12 -2.17 5.26 28.74 0.15 -2.02 16 24 C -0.12 -2.29 4.83 28.74 0.14 -2.16 16 25 C -0.15 -7.27 9.26 22.73 0.21 -7.06 16 26 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 27 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 28 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 30 H 0.43 9.32 8.85 -96.74 -0.86 8.47 16 31 H 0.08 2.10 6.12 -2.39 -0.01 2.08 16 32 H 0.06 1.41 7.87 -2.39 -0.02 1.40 16 33 H 0.09 1.39 6.63 -2.39 -0.02 1.38 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.03 6.63 -2.39 -0.02 1.01 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 1.00 6.99 -2.39 -0.02 0.98 16 40 H 0.05 1.06 7.47 -2.38 -0.02 1.04 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 43 H 0.09 1.30 7.47 -2.39 -0.02 1.29 16 44 H 0.11 5.26 7.60 -2.91 -0.02 5.24 16 Total: -1.00 -65.48 356.34 -0.64 -66.12 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.15 Total: 35.19 kcal Atomic # 6 Polarization: -85.09 SS G_CDS: 2.55 Total: -82.54 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -0.67 Total: -72.66 kcal Atomic # 8 Polarization: -81.96 SS G_CDS: -4.38 Total: -86.34 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 101.35 SS G_CDS: -0.32 Total: 101.03 kcal Total: -65.48 -0.64 -66.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.617 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds