Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46849 * 2 1 4 4 S 1.65602 * 119.99798 * 54.19708 * 3 2 1 5 5 O 1.42104 * 106.39965 * 178.85041 * 4 3 2 6 6 O 1.42097 * 106.40261 * 45.93304 * 4 3 2 7 7 C 1.76198 * 107.22024 * 292.39133 * 4 3 2 8 8 C 1.38658 * 119.87716 * 98.27581 * 7 4 3 9 9 C 1.38603 * 120.50348 * 179.97438 * 8 7 4 10 10 C 1.37641 * 120.25159 * 0.25994 * 9 8 7 11 11 C 1.40700 * 119.73687 * 359.51555 * 10 9 8 12 12 C 1.41395 * 120.24174 * 180.22930 * 11 10 9 13 13 H 1.08007 * 119.99977 * 325.94009 * 12 11 10 14 14 C 1.39951 * 120.00516 * 145.93944 * 12 11 10 15 15 N 1.30816 * 120.00119 * 162.82628 * 14 12 11 16 16 Si 1.86805 * 119.99364 * 342.83112 * 14 12 11 17 17 H 1.48498 * 109.47115 * 84.30871 * 16 14 12 18 18 H 1.48498 * 109.46875 * 204.30655 * 16 14 12 19 19 H 1.48498 * 109.47164 * 324.30860 * 16 14 12 20 20 C 1.37600 * 119.87775 * 278.30223 * 7 4 3 21 21 C 1.53001 * 109.47276 * 119.99523 * 2 1 3 22 22 C 1.52995 * 109.47152 * 180.02562 * 21 2 1 23 23 C 1.53002 * 109.47163 * 300.00223 * 22 21 2 24 24 C 1.52996 * 109.47123 * 60.00167 * 23 22 21 25 25 C 1.52991 * 109.47452 * 240.00223 * 2 1 3 26 26 H 1.08994 * 109.47128 * 46.97764 * 1 2 3 27 27 H 1.08999 * 109.46456 * 166.97354 * 1 2 3 28 28 H 1.08992 * 109.47422 * 286.97553 * 1 2 3 29 29 H 0.97002 * 119.99959 * 234.19709 * 3 2 1 30 30 H 1.08006 * 119.74605 * 359.97438 * 8 7 4 31 31 H 1.08003 * 119.87869 * 179.97438 * 9 8 7 32 32 H 1.07998 * 120.13177 * 179.74895 * 10 9 8 33 33 H 0.97007 * 119.99510 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.12410 * 359.97438 * 20 7 4 35 35 H 1.08998 * 109.47546 * 300.00637 * 21 2 1 36 36 H 1.09004 * 109.46632 * 60.00765 * 21 2 1 37 37 H 1.09000 * 109.47166 * 180.02562 * 22 21 2 38 38 H 1.08999 * 109.47405 * 60.00662 * 22 21 2 39 39 H 1.08997 * 109.47410 * 299.99717 * 23 22 21 40 40 H 1.09000 * 109.46972 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47400 * 179.97438 * 24 23 22 42 42 H 1.09009 * 109.47265 * 59.99891 * 24 23 22 43 43 H 1.09004 * 109.47255 * 299.99724 * 25 2 1 44 44 H 1.09007 * 109.47672 * 59.99713 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 1.5032 2.4415 1.1632 5 8 2.1686 3.6710 0.9083 6 8 1.5923 1.7520 2.4024 7 6 -0.2108 2.7352 0.8792 8 6 -1.1611 2.0438 1.6150 9 6 -2.5128 2.2650 1.4027 10 6 -2.9264 3.1716 0.4531 11 6 -1.9708 3.8823 -0.2961 12 6 -2.3837 4.8197 -1.2708 13 1 -3.2855 4.6459 -1.8394 14 6 -1.6241 5.9728 -1.4990 15 7 -1.7957 6.6624 -2.5973 16 14 -0.3651 6.5269 -0.2350 17 1 0.9100 5.7980 -0.4540 18 1 -0.1314 7.9865 -0.3763 19 1 -0.8731 6.2367 1.1298 20 6 -0.6012 3.6493 -0.0723 21 6 2.0401 -0.7211 1.2493 22 6 3.5700 -0.7206 1.2496 23 6 4.0805 -1.4415 0.0004 24 6 3.5706 -0.7203 -1.2489 25 6 2.0401 -0.7211 -1.2492 26 1 -0.3633 0.7011 -0.7513 27 1 -0.3632 -1.0012 -0.2316 28 1 -0.3634 0.3000 0.9828 29 1 2.6433 1.6748 -0.6813 30 1 -0.8457 1.3275 2.3592 31 1 -3.2445 1.7206 1.9812 32 1 -3.9802 3.3394 0.2865 33 1 -1.2694 7.4618 -2.7551 34 1 0.1407 4.1867 -0.6443 35 1 1.6767 -0.2074 2.1393 36 1 1.6768 -1.7489 1.2492 37 1 3.9334 -1.2347 2.1394 38 1 3.9330 0.3072 1.2498 39 1 3.7177 -2.4693 0.0002 40 1 5.1705 -1.4407 0.0004 41 1 3.9346 -1.2336 -2.1389 42 1 3.9335 0.3076 -1.2487 43 1 1.6768 -1.7489 -1.2492 44 1 1.6768 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -69.247963 kcal Electronic energy + Delta-G solvation = -27043.657454 eV Core-core repulsion = 23472.887164 eV Total energy + Delta-G solvation = -3570.770291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.51344 -38.00632 -36.70904 -35.37451 -34.04209 -33.69195 -30.95323 -30.79397 -30.24209 -30.09685 -26.39491 -25.30145 -22.71253 -22.16509 -21.39046 -21.25221 -19.86792 -18.58423 -17.82674 -17.28967 -16.66471 -15.72365 -15.33503 -15.05619 -14.85235 -14.66581 -14.15274 -14.05476 -13.82274 -13.35268 -13.24571 -12.83373 -12.75042 -12.55845 -12.35306 -12.15598 -12.10854 -11.68843 -11.58590 -11.49960 -11.38391 -11.28895 -11.15935 -11.00256 -10.84262 -10.77600 -10.59225 -10.44102 -10.34506 -10.02178 -9.80692 -9.66279 -9.24110 -9.09515 -8.31376 -7.77819 -7.03283 -4.62828 0.95901 1.86766 2.42530 3.14599 3.22686 3.28541 3.46329 3.94878 4.12229 4.33186 4.65786 4.69155 4.74812 4.92473 5.11398 5.15201 5.16506 5.28673 5.41968 5.51610 5.55490 5.67595 5.74607 5.78421 5.85503 5.94479 6.00231 6.03547 6.08892 6.14016 6.17481 6.25338 6.34479 6.39273 6.47116 6.53537 6.56796 6.65614 6.89645 7.08720 7.13790 7.25543 7.38068 7.53597 7.86066 8.18327 8.43151 8.65206 9.98578 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.005026 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.806794 B = 5569.766697 C = 5814.760396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.187 3.813 3 N -1.108 6.108 4 S 2.682 3.318 5 O -0.972 6.972 6 O -0.968 6.968 7 C -0.620 4.620 8 C -0.146 4.146 9 C -0.103 4.103 10 C -0.161 4.161 11 C 0.076 3.924 12 C -0.453 4.453 13 H 0.094 0.906 14 C 0.089 3.911 15 N -0.804 5.804 16 Si 0.877 3.123 17 H -0.240 1.240 18 H -0.282 1.282 19 H -0.249 1.249 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.413 0.587 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.287 0.713 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -13.750 2.728 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.099 3.901 3 N -0.867 5.867 4 S 2.777 3.223 5 O -0.962 6.962 6 O -0.958 6.958 7 C -0.711 4.711 8 C -0.167 4.167 9 C -0.122 4.122 10 C -0.180 4.180 11 C 0.072 3.928 12 C -0.482 4.482 13 H 0.112 0.888 14 C -0.131 4.131 15 N -0.428 5.428 16 Si 0.701 3.299 17 H -0.164 1.164 18 H -0.209 1.209 19 H -0.173 1.173 20 C -0.156 4.156 21 C -0.189 4.189 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.153 4.153 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.247 0.753 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.270 -13.225 3.316 15.947 hybrid contribution 0.011 0.534 -0.368 0.648 sum 8.281 -12.691 2.948 15.438 Atomic orbital electron populations 1.22953 0.93672 1.03410 1.05347 1.20103 0.93589 0.80365 0.96048 1.55664 1.60043 1.21728 1.49234 1.01891 0.74765 0.72330 0.73294 1.93574 1.74294 1.43099 1.85279 1.93460 1.87015 1.73733 1.41566 1.29968 1.22168 1.09817 1.09134 1.20056 0.92723 1.02110 1.01780 1.20754 0.94921 0.98234 0.98298 1.21353 0.98517 1.00720 0.97441 1.17787 0.90734 0.92956 0.91348 1.19431 1.09806 1.02904 1.16011 0.88803 1.26066 0.95933 0.96086 0.95001 1.69664 1.35944 1.14905 1.22309 0.86860 0.82374 0.77884 0.82782 1.16379 1.20863 1.17274 1.21042 0.97235 0.98452 0.98840 1.22424 0.96138 1.01125 0.99226 1.21424 0.95824 1.00701 0.97168 1.21562 0.99859 0.99284 0.94995 1.21555 0.95573 1.00941 0.97814 1.21792 0.95696 1.00740 0.97111 0.90534 0.91367 0.89756 0.75276 0.86593 0.87831 0.87493 0.90208 0.86369 0.87799 0.91287 0.92154 0.92132 0.92128 0.92405 0.92009 0.91855 0.90697 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 6.89 37.16 0.26 -2.40 16 2 C 0.19 2.36 0.74 -131.82 -0.10 2.27 16 3 N -1.11 -16.06 4.54 0.54 0.00 -16.06 16 4 S 2.68 50.16 5.46 -107.50 -0.59 49.57 16 5 O -0.97 -21.33 17.50 -57.17 -1.00 -22.34 16 6 O -0.97 -18.31 13.92 -57.17 -0.80 -19.11 16 7 C -0.62 -12.82 4.17 -39.66 -0.17 -12.98 16 8 C -0.15 -2.80 6.78 -39.29 -0.27 -3.07 16 9 C -0.10 -1.97 10.02 -39.66 -0.40 -2.36 16 10 C -0.16 -3.46 9.80 -38.87 -0.38 -3.84 16 11 C 0.08 1.83 4.99 -106.83 -0.53 1.30 16 12 C -0.45 -11.82 9.55 -37.74 -0.36 -12.18 16 13 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 14 C 0.09 2.30 5.40 -17.34 -0.09 2.21 16 15 N -0.80 -21.12 13.93 55.55 0.77 -20.35 16 16 Si 0.88 21.03 24.94 -169.99 -4.24 16.79 16 17 H -0.24 -5.78 6.25 56.52 0.35 -5.43 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.25 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.13 -3.14 6.79 -38.88 -0.26 -3.41 16 21 C -0.15 -1.85 4.42 -26.73 -0.12 -1.97 16 22 C -0.11 -1.30 5.76 -26.73 -0.15 -1.45 16 23 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 24 C -0.12 -1.15 5.75 -26.71 -0.15 -1.30 16 25 C -0.11 -1.18 4.77 -26.71 -0.13 -1.31 16 26 H 0.08 1.17 7.57 -51.93 -0.39 0.78 16 27 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.08 1.23 4.01 -51.93 -0.21 1.02 16 29 H 0.41 5.25 7.27 -34.48 -0.25 5.00 16 30 H 0.12 1.99 6.64 -52.48 -0.35 1.64 16 31 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 33 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 34 H 0.12 2.83 4.72 -52.49 -0.25 2.59 16 35 H 0.10 1.51 5.41 -51.93 -0.28 1.23 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.62 6.75 -51.92 -0.35 0.27 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -29.10 340.03 -10.04 -39.14 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.30 Total: 9.00 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: -3.01 Total: -41.78 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.78 Total: -36.41 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.80 Total: -41.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.24 Total: 16.79 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.59 Total: 49.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.10 -10.04 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.109 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds