Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46849 * 2 1 4 4 S 1.65602 * 119.99798 * 54.19708 * 3 2 1 5 5 O 1.42104 * 106.39965 * 178.85041 * 4 3 2 6 6 O 1.42097 * 106.40261 * 45.93304 * 4 3 2 7 7 C 1.76198 * 107.22024 * 292.39133 * 4 3 2 8 8 C 1.38658 * 119.87716 * 98.27581 * 7 4 3 9 9 C 1.38603 * 120.50348 * 179.97438 * 8 7 4 10 10 C 1.37641 * 120.25159 * 0.25994 * 9 8 7 11 11 C 1.40700 * 119.73687 * 359.51555 * 10 9 8 12 12 C 1.41395 * 120.24174 * 180.22930 * 11 10 9 13 13 H 1.08007 * 119.99977 * 325.94009 * 12 11 10 14 14 C 1.39951 * 120.00516 * 145.93944 * 12 11 10 15 15 N 1.30816 * 120.00119 * 162.82628 * 14 12 11 16 16 Si 1.86805 * 119.99364 * 342.83112 * 14 12 11 17 17 H 1.48498 * 109.47115 * 84.30871 * 16 14 12 18 18 H 1.48498 * 109.46875 * 204.30655 * 16 14 12 19 19 H 1.48498 * 109.47164 * 324.30860 * 16 14 12 20 20 C 1.37600 * 119.87775 * 278.30223 * 7 4 3 21 21 C 1.53001 * 109.47276 * 119.99523 * 2 1 3 22 22 C 1.52995 * 109.47152 * 180.02562 * 21 2 1 23 23 C 1.53002 * 109.47163 * 300.00223 * 22 21 2 24 24 C 1.52996 * 109.47123 * 60.00167 * 23 22 21 25 25 C 1.52991 * 109.47452 * 240.00223 * 2 1 3 26 26 H 1.08994 * 109.47128 * 46.97764 * 1 2 3 27 27 H 1.08999 * 109.46456 * 166.97354 * 1 2 3 28 28 H 1.08992 * 109.47422 * 286.97553 * 1 2 3 29 29 H 0.97002 * 119.99959 * 234.19709 * 3 2 1 30 30 H 1.08006 * 119.74605 * 359.97438 * 8 7 4 31 31 H 1.08003 * 119.87869 * 179.97438 * 9 8 7 32 32 H 1.07998 * 120.13177 * 179.74895 * 10 9 8 33 33 H 0.97007 * 119.99510 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.12410 * 359.97438 * 20 7 4 35 35 H 1.08998 * 109.47546 * 300.00637 * 21 2 1 36 36 H 1.09004 * 109.46632 * 60.00765 * 21 2 1 37 37 H 1.09000 * 109.47166 * 180.02562 * 22 21 2 38 38 H 1.08999 * 109.47405 * 60.00662 * 22 21 2 39 39 H 1.08997 * 109.47410 * 299.99717 * 23 22 21 40 40 H 1.09000 * 109.46972 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47400 * 179.97438 * 24 23 22 42 42 H 1.09009 * 109.47265 * 59.99891 * 24 23 22 43 43 H 1.09004 * 109.47255 * 299.99724 * 25 2 1 44 44 H 1.09007 * 109.47672 * 59.99713 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 1.5032 2.4415 1.1632 5 8 2.1686 3.6710 0.9083 6 8 1.5923 1.7520 2.4024 7 6 -0.2108 2.7352 0.8792 8 6 -1.1611 2.0438 1.6150 9 6 -2.5128 2.2650 1.4027 10 6 -2.9264 3.1716 0.4531 11 6 -1.9708 3.8823 -0.2961 12 6 -2.3837 4.8197 -1.2708 13 1 -3.2855 4.6459 -1.8394 14 6 -1.6241 5.9728 -1.4990 15 7 -1.7957 6.6624 -2.5973 16 14 -0.3651 6.5269 -0.2350 17 1 0.9100 5.7980 -0.4540 18 1 -0.1314 7.9865 -0.3763 19 1 -0.8731 6.2367 1.1298 20 6 -0.6012 3.6493 -0.0723 21 6 2.0401 -0.7211 1.2493 22 6 3.5700 -0.7206 1.2496 23 6 4.0805 -1.4415 0.0004 24 6 3.5706 -0.7203 -1.2489 25 6 2.0401 -0.7211 -1.2492 26 1 -0.3633 0.7011 -0.7513 27 1 -0.3632 -1.0012 -0.2316 28 1 -0.3634 0.3000 0.9828 29 1 2.6433 1.6748 -0.6813 30 1 -0.8457 1.3275 2.3592 31 1 -3.2445 1.7206 1.9812 32 1 -3.9802 3.3394 0.2865 33 1 -1.2694 7.4618 -2.7551 34 1 0.1407 4.1867 -0.6443 35 1 1.6767 -0.2074 2.1393 36 1 1.6768 -1.7489 1.2492 37 1 3.9334 -1.2347 2.1394 38 1 3.9330 0.3072 1.2498 39 1 3.7177 -2.4693 0.0002 40 1 5.1705 -1.4407 0.0004 41 1 3.9346 -1.2336 -2.1389 42 1 3.9335 0.3076 -1.2487 43 1 1.6768 -1.7489 -1.2492 44 1 1.6768 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -87.872822 kcal Electronic energy + Delta-G solvation = -27044.465089 eV Core-core repulsion = 23472.887164 eV Total energy + Delta-G solvation = -3571.577925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50525 -39.70602 -38.26484 -36.95060 -35.64908 -34.92961 -32.66354 -31.91227 -31.63293 -31.30950 -27.55659 -26.92908 -23.86749 -23.54668 -23.02216 -22.29843 -20.95215 -19.97277 -19.52744 -18.65747 -18.38435 -17.02511 -16.83456 -16.66143 -16.28541 -15.86466 -15.53628 -15.19839 -15.02403 -14.94486 -14.62824 -14.26779 -14.08121 -13.88693 -13.75345 -13.44791 -13.28782 -13.20423 -12.99688 -12.89783 -12.85885 -12.70113 -12.52438 -12.40069 -12.20712 -12.15153 -11.91439 -11.82939 -11.53764 -11.34781 -11.17821 -11.04689 -10.72657 -10.33547 -9.97435 -9.54099 -8.96446 -6.58134 -0.53307 0.16649 0.67430 1.23020 1.29293 1.33967 2.01872 2.05228 2.44044 2.70212 3.26841 3.43530 3.72289 3.86352 3.89613 4.17024 4.23733 4.28260 4.32365 4.37014 4.55543 4.57731 4.63324 4.70027 4.73335 4.83947 4.86336 4.90048 4.95403 5.05916 5.14541 5.21689 5.28898 5.29082 5.32150 5.34438 5.39233 5.48857 5.50304 5.59303 5.65816 5.67819 5.74332 6.10804 6.14039 6.23480 6.58588 6.74755 8.12175 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017742 B = 0.005026 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.806794 B = 5569.766697 C = 5814.760396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.181 3.819 3 N -1.096 6.096 4 S 2.698 3.302 5 O -1.008 7.008 6 O -0.967 6.967 7 C -0.633 4.633 8 C -0.119 4.119 9 C -0.100 4.100 10 C -0.158 4.158 11 C 0.055 3.945 12 C -0.486 4.486 13 H 0.070 0.930 14 C 0.065 3.935 15 N -0.844 5.844 16 Si 0.910 3.090 17 H -0.248 1.248 18 H -0.266 1.266 19 H -0.260 1.260 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.111 4.111 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.421 0.579 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.119 0.881 33 H 0.293 0.707 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -17.115 4.195 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.094 3.906 3 N -0.858 5.858 4 S 2.791 3.209 5 O -0.998 6.998 6 O -0.957 6.957 7 C -0.722 4.722 8 C -0.139 4.139 9 C -0.119 4.119 10 C -0.178 4.178 11 C 0.051 3.949 12 C -0.516 4.516 13 H 0.088 0.912 14 C -0.150 4.150 15 N -0.470 5.470 16 Si 0.733 3.267 17 H -0.173 1.173 18 H -0.191 1.191 19 H -0.185 1.185 20 C -0.172 4.172 21 C -0.189 4.189 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.150 4.150 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.258 0.742 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.957 -16.579 4.786 19.442 hybrid contribution -0.197 1.246 -0.632 1.411 sum 8.759 -15.333 4.153 18.140 Atomic orbital electron populations 1.22950 0.94313 1.04498 1.03797 1.20374 0.93180 0.79194 0.97839 1.55423 1.59650 1.21993 1.48729 1.01366 0.73740 0.71998 0.73781 1.93525 1.74687 1.45633 1.85979 1.93469 1.86661 1.73459 1.42148 1.30341 1.24159 1.09194 1.08508 1.20602 0.92680 1.00385 1.00232 1.21219 0.95864 0.97343 0.97442 1.21659 0.98851 1.00125 0.97159 1.17930 0.91796 0.93310 0.91816 1.19400 1.09793 1.04444 1.17952 0.91233 1.26385 0.96797 0.96131 0.95711 1.69675 1.37852 1.16169 1.23350 0.86372 0.80898 0.78454 0.80988 1.17274 1.19126 1.18456 1.20939 0.96619 0.99594 1.00068 1.22410 0.96764 1.02078 0.97681 1.21473 0.95280 1.00117 0.98752 1.21539 1.00392 0.99675 0.93622 1.21594 0.94926 1.00822 0.98747 1.21804 0.96300 1.01440 0.95437 0.92725 0.88597 0.90856 0.74227 0.83626 0.83333 0.86288 0.89606 0.87945 0.89991 0.88835 0.91436 0.93955 0.90575 0.91603 0.90293 0.92718 0.88501 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.80 6.89 71.98 0.50 -4.30 16 2 C 0.18 4.10 0.74 3.60 0.00 4.11 16 3 N -1.10 -30.39 4.54 -152.21 -0.69 -31.08 16 4 S 2.70 98.51 5.46 -56.49 -0.31 98.20 16 5 O -1.01 -44.51 17.50 -128.00 -2.24 -46.75 16 6 O -0.97 -34.85 13.92 -128.00 -1.78 -36.63 16 7 C -0.63 -25.49 4.17 22.22 0.09 -25.40 16 8 C -0.12 -4.20 6.78 22.46 0.15 -4.04 16 9 C -0.10 -3.48 10.02 22.22 0.22 -3.25 16 10 C -0.16 -6.62 9.80 22.73 0.22 -6.40 16 11 C 0.05 2.69 4.99 -21.29 -0.11 2.58 16 12 C -0.49 -26.55 9.55 23.46 0.22 -26.33 16 13 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 14 C 0.07 3.53 5.40 85.26 0.46 3.99 16 15 N -0.84 -46.42 13.93 21.83 0.30 -46.12 16 16 Si 0.91 44.58 24.94 68.60 1.71 46.29 16 17 H -0.25 -12.34 6.25 99.48 0.62 -11.72 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.26 -13.01 7.11 99.48 0.71 -12.31 16 20 C -0.15 -7.15 6.79 22.73 0.15 -6.99 16 21 C -0.15 -3.23 4.42 30.59 0.14 -3.09 16 22 C -0.12 -2.38 5.76 30.59 0.18 -2.21 16 23 C -0.11 -1.75 5.92 30.59 0.18 -1.57 16 24 C -0.12 -1.95 5.75 30.61 0.18 -1.77 16 25 C -0.11 -1.92 4.77 30.61 0.15 -1.77 16 26 H 0.05 1.58 7.57 -2.39 -0.02 1.56 16 27 H 0.10 1.78 8.08 -2.39 -0.02 1.76 16 28 H 0.07 1.89 4.01 -2.39 -0.01 1.88 16 29 H 0.42 10.40 7.27 -96.74 -0.70 9.69 16 30 H 0.15 4.35 6.64 -2.91 -0.02 4.33 16 31 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 32 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 33 H 0.29 14.70 8.30 -92.70 -0.77 13.93 16 34 H 0.10 5.11 4.72 -2.91 -0.01 5.09 16 35 H 0.08 2.15 5.41 -2.39 -0.01 2.14 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 0.99 7.60 -2.39 -0.02 0.97 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.96 6.75 -2.38 -0.02 0.94 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -65.07 340.03 -0.04 -65.11 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.23 Total: 27.45 kcal Atomic # 6 Polarization: -79.20 SS G_CDS: 2.74 Total: -76.46 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -0.39 Total: -77.20 kcal Atomic # 8 Polarization: -79.37 SS G_CDS: -4.02 Total: -83.39 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.71 Total: 46.29 kcal Atomic # 16 Polarization: 98.51 SS G_CDS: -0.31 Total: 98.20 kcal Total: -65.07 -0.04 -65.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.765 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds