Wall clock time and date at job start Tue Mar 31 2020 14:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.44629 * 2 1 4 4 C 1.53031 * 109.46281 * 119.97059 * 2 1 3 5 5 C 1.53194 * 109.34222 * 58.67106 * 4 2 1 6 6 N 1.46922 * 108.77241 * 54.61845 * 5 4 2 7 7 S 1.65603 * 120.62879 * 126.37125 * 6 5 4 8 8 O 1.42096 * 106.40530 * 203.53912 * 7 6 5 9 9 O 1.42100 * 106.40176 * 336.46499 * 7 6 5 10 10 C 1.76203 * 107.21763 * 89.99960 * 7 6 5 11 11 C 1.38660 * 119.87460 * 89.99861 * 10 7 6 12 12 C 1.38610 * 120.49694 * 179.97438 * 11 10 7 13 13 C 1.37634 * 120.25173 * 359.97438 * 12 11 10 14 14 C 1.40694 * 119.74874 * 0.02562 * 13 12 11 15 15 C 1.41395 * 120.24741 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99679 * 204.39160 * 15 14 13 17 17 C 1.39942 * 120.00171 * 24.39783 * 15 14 13 18 18 N 1.30829 * 119.99826 * 17.85511 * 17 15 14 19 19 Si 1.86795 * 119.99977 * 197.86060 * 17 15 14 20 20 H 1.48496 * 109.47374 * 89.99847 * 19 17 15 21 21 H 1.48507 * 109.47058 * 209.99571 * 19 17 15 22 22 H 1.48494 * 109.47152 * 329.99317 * 19 17 15 23 23 C 1.37600 * 119.87662 * 269.72459 * 10 7 6 24 24 C 1.46925 * 118.74339 * 306.39170 * 6 5 4 25 25 C 1.53044 * 109.43428 * 240.02327 * 2 1 3 26 26 H 1.08992 * 109.47302 * 300.02877 * 1 2 3 27 27 H 1.08999 * 109.47021 * 60.03323 * 1 2 3 28 28 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47324 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47410 * 299.96608 * 3 2 1 31 31 H 1.09006 * 109.47388 * 59.96927 * 3 2 1 32 32 H 1.09002 * 109.49678 * 298.70650 * 4 2 1 33 33 H 1.09000 * 109.50312 * 178.64491 * 4 2 1 34 34 H 1.09001 * 109.58896 * 174.40809 * 5 4 2 35 35 H 1.08998 * 109.58271 * 294.69066 * 5 4 2 36 36 H 1.07996 * 119.74913 * 359.96235 * 11 10 7 37 37 H 1.08009 * 119.87512 * 180.02562 * 12 11 10 38 38 H 1.08003 * 120.13016 * 180.02562 * 13 12 11 39 39 H 0.96993 * 120.00175 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.12576 * 0.02562 * 23 10 7 41 41 H 1.08993 * 109.58830 * 173.39785 * 24 6 5 42 42 H 1.08995 * 109.58617 * 293.68467 * 24 6 5 43 43 H 1.08990 * 109.47126 * 181.35478 * 25 2 1 44 44 H 1.09003 * 109.52360 * 61.29259 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 1.5003 -2.1545 1.2645 6 7 1.8632 -2.8091 0.0002 7 16 2.6674 -4.2568 0.0001 8 8 3.3376 -4.3435 -1.2498 9 8 3.3387 -4.3430 1.2496 10 6 1.4494 -5.5300 0.0010 11 6 0.9713 -6.0293 -1.2010 12 6 0.0136 -7.0312 -1.2154 13 6 -0.4733 -7.5421 -0.0338 14 6 0.0044 -7.0431 1.1919 15 6 -0.4880 -7.5607 2.4121 16 1 -0.4477 -6.9600 3.3089 17 6 -1.0276 -8.8511 2.4579 18 7 -0.7717 -9.7015 1.4972 19 14 -2.1132 -9.3592 3.8906 20 1 -3.5298 -9.0466 3.5734 21 1 -1.9694 -10.8182 4.1275 22 1 -1.7034 -8.6171 5.1097 23 6 0.9802 -6.0290 1.1944 24 6 1.4996 -2.1548 -1.2640 25 6 2.0392 -0.7211 -1.2502 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 3.1294 1.4432 0.0005 30 1 1.6763 1.9562 -0.8903 31 1 1.6754 1.9566 0.8897 32 1 1.6958 -0.1936 2.1397 33 1 3.1296 -0.7423 1.2385 34 1 1.9395 -2.7018 2.0986 35 1 0.4157 -2.1356 1.3705 36 1 1.3479 -5.6345 -2.1330 37 1 -0.3514 -7.4131 -2.1575 38 1 -1.2192 -8.3230 -0.0473 39 1 -1.1453 -10.5960 1.5291 40 1 1.3569 -5.6415 2.1295 41 1 1.9382 -2.7023 -2.0982 42 1 0.4147 -2.1381 -1.3680 43 1 3.1289 -0.7426 -1.2387 44 1 1.6951 -0.1943 -2.1402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619481483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:22 Heat of formation + Delta-G solvation = -73.343663 kcal Electronic energy + Delta-G solvation = -26035.027599 eV Core-core repulsion = 22464.079705 eV Total energy + Delta-G solvation = -3570.947894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.41655 -37.62768 -36.71655 -35.28388 -34.31961 -33.83976 -31.10509 -30.07267 -29.78022 -27.83593 -27.40595 -25.48414 -23.40689 -22.61988 -21.81888 -20.97410 -19.34337 -18.38547 -17.44353 -17.08736 -15.93366 -15.67362 -15.21820 -14.90551 -14.79048 -14.55877 -14.29124 -14.25021 -14.12930 -13.44539 -13.33794 -12.72983 -12.57914 -12.29162 -12.13610 -11.94250 -11.89740 -11.88112 -11.57131 -11.45937 -11.40419 -11.35243 -11.22988 -11.14400 -11.04080 -10.88272 -10.85215 -10.59655 -10.30700 -10.29163 -9.75889 -9.59874 -9.35343 -8.69801 -8.01998 -7.70062 -6.92037 -4.53449 0.99238 2.20954 2.63236 2.99812 3.03652 3.06270 3.49103 3.82870 4.28095 4.41941 4.56978 4.65516 4.69041 4.86983 5.06420 5.20718 5.33165 5.39297 5.40683 5.51849 5.54770 5.58254 5.64936 5.73859 5.76851 5.84035 5.86571 5.98680 6.02016 6.06847 6.15860 6.18678 6.18975 6.35269 6.43730 6.65146 6.72117 6.77783 6.95225 7.05598 7.22698 7.39073 7.72956 7.80605 7.94588 8.40291 8.67247 8.72128 10.03643 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003709 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.035716 B = 7546.433507 C = 8113.191360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.120 4.120 5 C 0.117 3.883 6 N -0.998 5.998 7 S 2.686 3.314 8 O -0.974 6.974 9 O -0.970 6.970 10 C -0.631 4.631 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.092 3.908 15 C -0.461 4.461 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.260 1.260 23 C -0.126 4.126 24 C 0.118 3.882 25 C -0.120 4.120 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 15.702 -2.724 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.159 4.159 5 C -0.008 4.008 6 N -0.835 5.835 7 S 2.784 3.216 8 O -0.964 6.964 9 O -0.960 6.960 10 C -0.723 4.723 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.138 4.138 14 C 0.088 3.912 15 C -0.491 4.491 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.419 5.419 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.148 4.148 24 C -0.007 4.007 25 C -0.159 4.159 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.816 15.364 -2.783 15.636 hybrid contribution -1.215 -0.774 0.560 1.546 sum -0.399 14.590 -2.223 14.764 Atomic orbital electron populations 1.21993 0.94486 1.02524 1.01445 1.20500 0.95838 0.94858 0.95342 1.21862 1.00917 0.95390 1.01537 1.21936 1.01160 0.95336 0.97487 1.21443 1.00583 0.93442 0.85331 1.57734 1.76663 1.37674 1.11466 1.01782 0.74271 0.72599 0.72942 1.93489 1.72159 1.86432 1.44353 1.93510 1.71998 1.86314 1.44193 1.29835 1.22000 1.20282 1.00197 1.20071 1.01339 1.01083 0.94344 1.20812 0.98340 0.97531 0.97384 1.21643 1.00177 1.00505 0.91494 1.17681 0.89373 0.90561 0.93568 1.19611 1.34745 0.98927 0.95776 0.89935 1.25940 0.94803 0.96105 0.97496 1.69785 1.34419 1.05564 1.32121 0.86234 0.80509 0.78195 0.81400 1.19183 1.20199 1.18424 1.20740 0.98154 1.01621 0.94235 1.21425 1.00449 0.93479 0.85358 1.21932 1.01165 0.95306 0.97494 0.92783 0.92841 0.91601 0.92772 0.92772 0.92733 0.90890 0.91465 0.88850 0.91133 0.87707 0.88403 0.85750 0.90553 0.87142 0.89026 0.91227 0.91467 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.72 37.16 0.29 -1.05 16 2 C -0.07 -0.63 0.77 -154.47 -0.12 -0.74 16 3 C -0.14 -1.13 8.47 37.16 0.31 -0.82 16 4 C -0.12 -1.29 4.90 -26.61 -0.13 -1.42 16 5 C 0.12 1.54 6.00 -3.71 -0.02 1.52 16 6 N -1.00 -14.96 3.29 -113.53 -0.37 -15.33 16 7 S 2.69 51.76 5.73 -107.50 -0.62 51.14 16 8 O -0.97 -20.16 15.86 -57.17 -0.91 -21.07 16 9 O -0.97 -20.71 15.85 -57.17 -0.91 -21.62 16 10 C -0.63 -13.98 5.97 -39.66 -0.24 -14.22 16 11 C -0.15 -3.23 9.53 -39.29 -0.37 -3.61 16 12 C -0.12 -2.74 10.02 -39.66 -0.40 -3.14 16 13 C -0.12 -2.96 8.70 -38.87 -0.34 -3.30 16 14 C 0.09 2.37 5.58 -106.83 -0.60 1.78 16 15 C -0.46 -11.83 9.05 -37.74 -0.34 -12.17 16 16 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 17 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 18 N -0.79 -19.88 10.95 55.55 0.61 -19.27 16 19 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 23 C -0.13 -3.05 9.26 -38.87 -0.36 -3.41 16 24 C 0.12 1.49 6.00 -3.71 -0.02 1.47 16 25 C -0.12 -1.25 4.90 -26.61 -0.13 -1.38 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.67 4.99 -51.93 -0.26 0.41 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.31 6.92 -51.93 -0.36 0.95 16 35 H 0.07 0.85 6.70 -51.93 -0.35 0.50 16 36 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 37 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.12 3.15 6.16 -52.48 -0.32 2.83 16 39 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 40 H 0.11 2.55 7.60 -52.49 -0.40 2.15 16 41 H 0.09 1.21 6.91 -51.93 -0.36 0.85 16 42 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -29.87 355.72 -10.99 -40.86 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.57 Total: 5.68 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: -2.56 Total: -38.76 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.24 Total: -34.60 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.81 Total: -42.69 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 51.76 SS G_CDS: -0.62 Total: 51.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.87 -10.99 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619481483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.487 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds