Wall clock time and date at job start Tue Mar 31 2020 14:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.44629 * 2 1 4 4 C 1.53031 * 109.46281 * 119.97059 * 2 1 3 5 5 C 1.53194 * 109.34222 * 58.67106 * 4 2 1 6 6 N 1.46922 * 108.77241 * 54.61845 * 5 4 2 7 7 S 1.65603 * 120.62879 * 126.37125 * 6 5 4 8 8 O 1.42096 * 106.40530 * 203.53912 * 7 6 5 9 9 O 1.42100 * 106.40176 * 336.46499 * 7 6 5 10 10 C 1.76203 * 107.21763 * 89.99960 * 7 6 5 11 11 C 1.38660 * 119.87460 * 89.99861 * 10 7 6 12 12 C 1.38610 * 120.49694 * 179.97438 * 11 10 7 13 13 C 1.37634 * 120.25173 * 359.97438 * 12 11 10 14 14 C 1.40694 * 119.74874 * 0.02562 * 13 12 11 15 15 C 1.41395 * 120.24741 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99679 * 204.39160 * 15 14 13 17 17 C 1.39942 * 120.00171 * 24.39783 * 15 14 13 18 18 N 1.30829 * 119.99826 * 17.85511 * 17 15 14 19 19 Si 1.86795 * 119.99977 * 197.86060 * 17 15 14 20 20 H 1.48496 * 109.47374 * 89.99847 * 19 17 15 21 21 H 1.48507 * 109.47058 * 209.99571 * 19 17 15 22 22 H 1.48494 * 109.47152 * 329.99317 * 19 17 15 23 23 C 1.37600 * 119.87662 * 269.72459 * 10 7 6 24 24 C 1.46925 * 118.74339 * 306.39170 * 6 5 4 25 25 C 1.53044 * 109.43428 * 240.02327 * 2 1 3 26 26 H 1.08992 * 109.47302 * 300.02877 * 1 2 3 27 27 H 1.08999 * 109.47021 * 60.03323 * 1 2 3 28 28 H 1.09004 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47324 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47410 * 299.96608 * 3 2 1 31 31 H 1.09006 * 109.47388 * 59.96927 * 3 2 1 32 32 H 1.09002 * 109.49678 * 298.70650 * 4 2 1 33 33 H 1.09000 * 109.50312 * 178.64491 * 4 2 1 34 34 H 1.09001 * 109.58896 * 174.40809 * 5 4 2 35 35 H 1.08998 * 109.58271 * 294.69066 * 5 4 2 36 36 H 1.07996 * 119.74913 * 359.96235 * 11 10 7 37 37 H 1.08009 * 119.87512 * 180.02562 * 12 11 10 38 38 H 1.08003 * 120.13016 * 180.02562 * 13 12 11 39 39 H 0.96993 * 120.00175 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.12576 * 0.02562 * 23 10 7 41 41 H 1.08993 * 109.58830 * 173.39785 * 24 6 5 42 42 H 1.08995 * 109.58617 * 293.68467 * 24 6 5 43 43 H 1.08990 * 109.47126 * 181.35478 * 25 2 1 44 44 H 1.09003 * 109.52360 * 61.29259 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 1.5003 -2.1545 1.2645 6 7 1.8632 -2.8091 0.0002 7 16 2.6674 -4.2568 0.0001 8 8 3.3376 -4.3435 -1.2498 9 8 3.3387 -4.3430 1.2496 10 6 1.4494 -5.5300 0.0010 11 6 0.9713 -6.0293 -1.2010 12 6 0.0136 -7.0312 -1.2154 13 6 -0.4733 -7.5421 -0.0338 14 6 0.0044 -7.0431 1.1919 15 6 -0.4880 -7.5607 2.4121 16 1 -0.4477 -6.9600 3.3089 17 6 -1.0276 -8.8511 2.4579 18 7 -0.7717 -9.7015 1.4972 19 14 -2.1132 -9.3592 3.8906 20 1 -3.5298 -9.0466 3.5734 21 1 -1.9694 -10.8182 4.1275 22 1 -1.7034 -8.6171 5.1097 23 6 0.9802 -6.0290 1.1944 24 6 1.4996 -2.1548 -1.2640 25 6 2.0392 -0.7211 -1.2502 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 3.1294 1.4432 0.0005 30 1 1.6763 1.9562 -0.8903 31 1 1.6754 1.9566 0.8897 32 1 1.6958 -0.1936 2.1397 33 1 3.1296 -0.7423 1.2385 34 1 1.9395 -2.7018 2.0986 35 1 0.4157 -2.1356 1.3705 36 1 1.3479 -5.6345 -2.1330 37 1 -0.3514 -7.4131 -2.1575 38 1 -1.2192 -8.3230 -0.0473 39 1 -1.1453 -10.5960 1.5291 40 1 1.3569 -5.6415 2.1295 41 1 1.9382 -2.7023 -2.0982 42 1 0.4147 -2.1381 -1.3680 43 1 3.1289 -0.7426 -1.2387 44 1 1.6951 -0.1943 -2.1402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619481483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:21 Heat of formation + Delta-G solvation = -90.326839 kcal Electronic energy + Delta-G solvation = -26035.764044 eV Core-core repulsion = 22464.079705 eV Total energy + Delta-G solvation = -3571.684339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.31792 -39.45648 -38.35255 -36.92955 -35.68206 -35.32250 -32.06582 -31.92600 -31.59789 -28.71417 -28.09213 -27.36017 -24.36666 -23.75702 -23.46153 -22.80278 -20.58405 -19.95286 -18.85221 -18.34648 -17.73386 -17.12608 -16.83509 -16.52406 -15.84539 -15.53621 -15.48322 -15.30411 -15.15846 -15.06987 -14.96571 -14.33022 -13.77076 -13.73414 -13.40310 -13.29412 -13.12898 -13.07847 -13.05116 -12.87529 -12.73000 -12.70508 -12.64127 -12.58405 -12.23014 -12.19696 -12.05198 -11.71660 -11.55907 -11.37366 -11.15806 -11.12776 -11.12257 -9.93061 -9.79433 -9.57978 -8.74171 -6.46786 -0.54850 0.39456 0.82517 1.36886 1.46007 1.50617 2.06101 2.17367 2.55197 2.75896 3.35428 3.49007 3.73186 3.81699 3.89507 4.15439 4.23057 4.29636 4.41715 4.44623 4.51171 4.66402 4.70331 4.82254 4.84105 4.87719 4.88924 4.91077 4.96217 5.02219 5.05871 5.13492 5.16871 5.19790 5.28180 5.31453 5.39331 5.42616 5.54651 5.55006 5.65078 5.73019 5.86967 5.92205 6.08812 6.51028 6.78436 6.83228 8.24091 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.003709 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.035716 B = 7546.433507 C = 8113.191360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.118 4.118 5 C 0.109 3.891 6 N -0.989 5.989 7 S 2.709 3.291 8 O -0.986 6.986 9 O -0.993 6.993 10 C -0.639 4.639 11 C -0.150 4.150 12 C -0.122 4.122 13 C -0.142 4.142 14 C 0.063 3.937 15 C -0.498 4.498 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.825 5.825 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.146 4.146 24 C 0.108 3.892 25 C -0.118 4.118 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 17.606 -3.102 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.193 4.193 4 C -0.157 4.157 5 C -0.016 4.016 6 N -0.829 5.829 7 S 2.804 3.196 8 O -0.976 6.976 9 O -0.984 6.984 10 C -0.727 4.727 11 C -0.170 4.170 12 C -0.141 4.141 13 C -0.162 4.162 14 C 0.060 3.940 15 C -0.527 4.527 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.450 5.450 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.182 1.182 23 C -0.167 4.167 24 C -0.016 4.016 25 C -0.157 4.157 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.097 17.244 -3.178 17.535 hybrid contribution -0.937 -1.262 0.587 1.678 sum -0.840 15.982 -2.591 16.213 Atomic orbital electron populations 1.21975 0.93885 1.01948 1.02478 1.20515 0.96266 0.95586 0.94077 1.21817 1.00811 0.94176 1.02485 1.21959 1.00726 0.93741 0.99258 1.21680 1.01384 0.94662 0.83881 1.57473 1.76410 1.35687 1.13322 1.01075 0.73715 0.72783 0.72024 1.93464 1.72475 1.86948 1.44761 1.93473 1.72667 1.86925 1.45293 1.30362 1.21778 1.21011 0.99574 1.20450 1.00760 1.00524 0.95307 1.21148 0.97985 0.97185 0.97832 1.21654 1.01027 1.01212 0.92268 1.18044 0.90164 0.91468 0.94294 1.19882 1.36768 1.00110 0.95906 0.90074 1.26804 0.95396 0.95463 1.00325 1.69827 1.35124 1.06170 1.33921 0.85134 0.78522 0.77995 0.77698 1.18270 1.19274 1.18162 1.20818 0.98682 1.02102 0.95145 1.21739 1.01525 0.94612 0.83750 1.21961 1.00753 0.93880 0.99095 0.91997 0.91666 0.92919 0.92952 0.91712 0.91952 0.88928 0.92149 0.90325 0.89997 0.85213 0.85500 0.86823 0.89726 0.87312 0.89590 0.89785 0.92144 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.72 71.98 0.56 -1.66 16 2 C -0.06 -1.06 0.77 -52.16 -0.04 -1.10 16 3 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 4 C -0.12 -2.30 4.90 30.67 0.15 -2.15 16 5 C 0.11 2.76 6.00 86.36 0.52 3.28 16 6 N -0.99 -28.81 3.29 -513.09 -1.69 -30.50 16 7 S 2.71 104.24 5.73 -56.49 -0.32 103.91 16 8 O -0.99 -40.14 15.86 -128.00 -2.03 -42.17 16 9 O -0.99 -43.08 15.85 -128.00 -2.03 -45.11 16 10 C -0.64 -28.57 5.97 22.22 0.13 -28.44 16 11 C -0.15 -6.50 9.53 22.46 0.21 -6.29 16 12 C -0.12 -5.53 10.02 22.22 0.22 -5.31 16 13 C -0.14 -7.29 8.70 22.73 0.20 -7.09 16 14 C 0.06 3.41 5.58 -21.29 -0.12 3.29 16 15 C -0.50 -26.47 9.05 23.46 0.21 -26.26 16 16 H 0.08 4.15 7.91 -2.91 -0.02 4.12 16 17 C 0.04 1.75 5.14 85.26 0.44 2.19 16 18 N -0.82 -42.22 10.95 21.83 0.24 -41.98 16 19 Si 0.99 37.18 29.60 68.60 2.03 39.21 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 C -0.15 -7.32 9.26 22.73 0.21 -7.11 16 24 C 0.11 2.53 6.00 86.36 0.52 3.05 16 25 C -0.12 -2.15 4.90 30.67 0.15 -2.00 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.94 4.99 -2.39 -0.01 0.93 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 2.23 6.92 -2.39 -0.02 2.22 16 35 H 0.08 1.89 6.70 -2.39 -0.02 1.88 16 36 H 0.13 4.92 7.60 -2.91 -0.02 4.90 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.11 5.98 6.16 -2.91 -0.02 5.96 16 39 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 40 H 0.11 5.29 7.60 -2.91 -0.02 5.27 16 41 H 0.09 2.12 6.91 -2.39 -0.02 2.11 16 42 H 0.08 1.74 6.71 -2.39 -0.02 1.73 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.38 355.72 1.16 -64.22 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.99 Total: 29.15 kcal Atomic # 6 Polarization: -80.72 SS G_CDS: 3.97 Total: -76.74 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -1.45 Total: -72.48 kcal Atomic # 8 Polarization: -83.22 SS G_CDS: -4.06 Total: -87.28 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: 104.24 SS G_CDS: -0.32 Total: 103.91 kcal Total: -65.38 1.16 -64.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619481483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.106 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds