Wall clock time and date at job start Tue Mar 31 2020 14:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.01479 * 2 1 4 4 C 1.54264 * 110.03502 * 238.61125 * 2 1 3 5 5 C 1.54964 * 104.15950 * 217.13642 * 4 2 1 6 6 C 1.54888 * 102.77746 * 37.88699 * 5 4 2 7 7 C 1.53875 * 110.03376 * 121.38874 * 2 1 3 8 8 H 1.08999 * 110.03046 * 238.57493 * 7 2 1 9 9 N 1.46504 * 110.02992 * 359.95225 * 7 2 1 10 10 S 1.65592 * 119.99866 * 214.99570 * 9 7 2 11 11 O 1.42104 * 106.40137 * 178.53793 * 10 9 7 12 12 O 1.42097 * 106.40731 * 311.46448 * 10 9 7 13 13 C 1.76200 * 107.21843 * 65.00557 * 10 9 7 14 14 C 1.38654 * 119.88049 * 89.99214 * 13 10 9 15 15 C 1.38613 * 120.50663 * 179.97438 * 14 13 10 16 16 C 1.37641 * 120.24418 * 0.03054 * 15 14 13 17 17 C 1.40688 * 119.74681 * 359.97438 * 16 15 14 18 18 C 1.41394 * 120.24678 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00153 * 204.39411 * 18 17 16 20 20 C 1.39947 * 119.99893 * 24.39401 * 18 17 16 21 21 N 1.30827 * 119.99704 * 17.85961 * 20 18 17 22 22 Si 1.86797 * 120.00351 * 197.85927 * 20 18 17 23 23 H 1.48501 * 109.47068 * 89.99497 * 22 20 18 24 24 H 1.48497 * 109.47469 * 209.99966 * 22 20 18 25 25 H 1.48504 * 109.47175 * 330.00252 * 22 20 18 26 26 C 1.37597 * 119.87505 * 269.72550 * 13 10 9 27 27 H 1.09008 * 109.47216 * 59.30290 * 1 2 3 28 28 H 1.09002 * 109.46880 * 179.29891 * 1 2 3 29 29 H 1.09002 * 109.47420 * 299.30005 * 1 2 3 30 30 H 1.08992 * 109.47212 * 60.70021 * 3 2 1 31 31 H 1.09004 * 109.46703 * 180.70007 * 3 2 1 32 32 H 1.09004 * 109.47175 * 300.69587 * 3 2 1 33 33 H 1.09008 * 110.48432 * 335.77756 * 4 2 1 34 34 H 1.09000 * 110.49235 * 98.42713 * 4 2 1 35 35 H 1.08998 * 110.71970 * 279.57107 * 5 4 2 36 36 H 1.08999 * 110.92492 * 156.28964 * 5 4 2 37 37 H 1.09007 * 110.48361 * 203.40718 * 6 5 4 38 38 H 1.08999 * 110.49133 * 80.76671 * 6 5 4 39 39 H 0.96999 * 119.99456 * 34.99928 * 9 7 2 40 40 H 1.08005 * 119.74709 * 359.97438 * 14 13 10 41 41 H 1.07998 * 119.87714 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.12299 * 179.97438 * 16 15 14 43 43 H 0.96999 * 119.99407 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.12614 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0585 -0.7548 -1.2372 5 6 3.3137 -1.5010 -0.7184 6 6 2.8874 -1.9403 0.7044 7 6 2.0571 -0.7530 1.2341 8 1 2.6866 -0.0944 1.8325 9 7 0.9359 -1.2431 2.0396 10 16 1.0590 -1.2865 3.6904 11 8 -0.1868 -1.7705 4.1731 12 8 2.3016 -1.9100 3.9839 13 6 1.1947 0.3797 4.2472 14 6 0.0509 1.1000 4.5564 15 6 0.1426 2.4114 4.9961 16 6 1.3732 3.0133 5.1299 17 6 2.5405 2.2922 4.8190 18 6 3.8100 2.9004 4.9520 19 1 4.6461 2.5373 4.3728 20 6 3.9831 3.9728 5.8343 21 7 3.1028 4.1932 6.7767 22 14 5.4709 5.0897 5.6664 23 1 5.1445 6.2154 4.7546 24 1 5.8411 5.6251 7.0011 25 1 6.6101 4.3164 5.1099 26 6 2.4356 0.9595 4.3789 27 1 -0.3634 0.5247 -0.8837 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3634 0.5029 0.8962 30 1 1.7055 1.9511 0.8961 31 1 3.1436 1.4272 -0.0126 32 1 1.6851 1.9586 -0.8837 33 1 1.3143 -1.4653 -1.5973 34 1 2.3298 -0.0527 -2.0255 35 1 4.1710 -0.8292 -0.6747 36 1 3.5357 -2.3683 -1.3401 37 1 3.7638 -2.1030 1.3319 38 1 2.2772 -2.8423 0.6584 39 1 0.1214 -1.5423 1.6059 40 1 -0.9188 0.6357 4.4539 41 1 -0.7548 2.9628 5.2345 42 1 1.4423 4.0353 5.4722 43 1 3.2226 4.9367 7.3880 44 1 3.3254 0.3954 4.1412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619489749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:30 Heat of formation + Delta-G solvation = -75.975634 kcal Electronic energy + Delta-G solvation = -26432.283289 eV Core-core repulsion = 22861.221264 eV Total energy + Delta-G solvation = -3571.062024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.48974 -37.63990 -36.59400 -35.24704 -33.85175 -33.42383 -32.17755 -30.08317 -29.79877 -27.59558 -26.83384 -25.48775 -24.26353 -21.88937 -21.02246 -20.75369 -19.13246 -18.86451 -17.92072 -16.99618 -16.11413 -15.89660 -15.30356 -15.13557 -14.74362 -14.67408 -14.30327 -13.48904 -13.46551 -13.36564 -13.07911 -12.89163 -12.61021 -12.55235 -12.08908 -11.93124 -11.58109 -11.53494 -11.52588 -11.40725 -11.33358 -11.31276 -11.05326 -10.98950 -10.86345 -10.85108 -10.60099 -10.56286 -10.50595 -10.37442 -9.77295 -9.65275 -9.36013 -9.05951 -8.03537 -7.70742 -6.92781 -4.54086 1.07149 2.20377 2.62356 2.99403 3.02990 3.05693 3.61028 3.82251 4.25267 4.41093 4.49805 4.61871 4.77089 5.04083 5.23965 5.34712 5.37258 5.38918 5.40964 5.45459 5.62051 5.70143 5.78314 5.83629 5.90517 5.92794 6.02090 6.04904 6.15763 6.17630 6.19477 6.30248 6.37551 6.44720 6.55085 6.64921 6.75529 6.85647 7.03484 7.20217 7.28544 7.38446 7.72566 7.79713 7.93766 8.39558 8.66623 8.71320 10.02833 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.004789 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.017751 B = 5845.016294 C = 6766.330864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.114 4.114 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.159 3.841 8 H 0.096 0.904 9 N -1.115 6.115 10 S 2.684 3.316 11 O -0.979 6.979 12 O -0.970 6.970 13 C -0.630 4.630 14 C -0.145 4.145 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.128 4.128 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.283 0.717 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -4.475 -13.471 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.178 4.178 7 C 0.051 3.949 8 H 0.114 0.886 9 N -0.873 5.873 10 S 2.779 3.221 11 O -0.970 6.970 12 O -0.960 6.960 13 C -0.722 4.722 14 C -0.166 4.166 15 C -0.141 4.141 16 C -0.137 4.137 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.735 3.265 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.837 -5.062 -12.644 13.743 hybrid contribution 0.270 1.278 -0.036 1.307 sum -1.568 -3.784 -12.680 13.325 Atomic orbital electron populations 1.21868 0.94341 1.01267 1.02268 1.21383 0.95967 0.95816 0.94205 1.21931 1.01148 0.94531 1.02356 1.22497 0.97302 0.98711 0.96695 1.22474 0.97818 0.99858 0.96073 1.22878 1.00342 0.98274 0.96321 1.21495 0.86366 0.94692 0.92353 0.88633 1.55862 1.24869 1.81025 1.25578 1.01803 0.73109 0.75123 0.72016 1.93515 1.44523 1.80366 1.78569 1.93532 1.44916 1.74616 1.82951 1.29744 1.00393 1.22817 1.19210 1.20068 0.94971 0.95419 1.06136 1.20809 0.97121 0.94916 1.01219 1.21642 0.91207 1.00120 1.00745 1.17666 0.93586 0.90097 0.89748 1.19600 0.95839 1.12743 1.20800 0.89955 1.25933 0.97964 0.97144 0.93266 1.69787 1.34693 1.26100 1.11268 0.86253 0.81393 0.80250 0.78568 1.19182 1.20205 1.18424 1.20737 0.93552 0.95165 1.05468 0.92693 0.92720 0.91562 0.91580 0.92301 0.92712 0.91611 0.91537 0.91247 0.91619 0.90506 0.90959 0.75131 0.87702 0.88459 0.85791 0.90562 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.12 37.16 0.26 -1.22 16 2 C -0.07 -0.81 0.94 -153.39 -0.14 -0.96 16 3 C -0.14 -1.70 8.14 37.16 0.30 -1.40 16 4 C -0.11 -1.08 5.91 -25.03 -0.15 -1.23 16 5 C -0.12 -1.22 6.91 -24.70 -0.17 -1.39 16 6 C -0.14 -1.68 6.54 -25.07 -0.16 -1.85 16 7 C 0.16 2.14 3.08 -66.81 -0.21 1.93 16 8 H 0.10 1.45 6.85 -51.93 -0.36 1.10 16 9 N -1.11 -15.93 4.69 -3.94 -0.02 -15.95 16 10 S 2.68 50.59 5.65 -107.50 -0.61 49.98 16 11 O -0.98 -20.28 17.27 -57.17 -0.99 -21.27 16 12 O -0.97 -20.51 17.02 -57.17 -0.97 -21.48 16 13 C -0.63 -13.60 5.85 -39.66 -0.23 -13.83 16 14 C -0.14 -3.13 9.53 -39.29 -0.37 -3.51 16 15 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 16 C -0.12 -2.88 8.70 -38.88 -0.34 -3.22 16 17 C 0.09 2.34 5.57 -106.83 -0.60 1.74 16 18 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 19 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.66 10.95 55.55 0.61 -19.05 16 22 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 24 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 26 C -0.13 -3.00 8.68 -38.87 -0.34 -3.34 16 27 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.05 0.51 6.81 -51.93 -0.35 0.16 16 29 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.57 7.84 -51.92 -0.41 0.17 16 34 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 39 H 0.41 4.92 6.40 -34.47 -0.22 4.70 16 40 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 41 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.10 6.15 -52.49 -0.32 2.78 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.49 7.60 -52.48 -0.40 2.09 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -29.58 361.91 -11.15 -40.73 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.62 Total: 10.33 kcal Atomic # 6 Polarization: -38.60 SS G_CDS: -2.97 Total: -41.57 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.59 Total: -35.00 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.96 Total: -42.75 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 50.59 SS G_CDS: -0.61 Total: 49.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.58 -11.15 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619489749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.247 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds