Wall clock time and date at job start Tue Mar 31 2020 14:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 110.05136 * 2 1 4 4 C 1.54265 * 110.03523 * 238.58749 * 2 1 3 5 5 C 1.54892 * 104.19566 * 264.32052 * 4 2 1 6 6 C 1.54890 * 102.74746 * 322.05935 * 5 4 2 7 7 C 1.53871 * 110.03406 * 121.41474 * 2 1 3 8 8 H 1.08996 * 110.03438 * 0.02562 * 7 2 1 9 9 N 1.46499 * 110.03388 * 238.57046 * 7 2 1 10 10 S 1.65602 * 119.99830 * 144.99826 * 9 7 2 11 11 O 1.42104 * 106.40114 * 178.54427 * 10 9 7 12 12 O 1.42098 * 106.40525 * 311.46593 * 10 9 7 13 13 C 1.76200 * 107.21603 * 65.00621 * 10 9 7 14 14 C 1.38660 * 119.87561 * 269.72507 * 13 10 9 15 15 C 1.38604 * 120.50496 * 179.72481 * 14 13 10 16 16 C 1.37646 * 120.24420 * 0.54816 * 15 14 13 17 17 C 1.40697 * 119.74619 * 359.72785 * 16 15 14 18 18 C 1.41397 * 120.24393 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99731 * 155.18496 * 18 17 16 20 20 C 1.39948 * 119.99832 * 335.18153 * 18 17 16 21 21 N 1.30820 * 120.00295 * 342.35895 * 20 18 17 22 22 Si 1.86802 * 119.99562 * 162.36552 * 20 18 17 23 23 H 1.48498 * 109.47242 * 90.00130 * 22 20 18 24 24 H 1.48501 * 109.46723 * 209.99867 * 22 20 18 25 25 H 1.48499 * 109.47123 * 329.99539 * 22 20 18 26 26 C 1.37594 * 119.87835 * 90.00011 * 13 10 9 27 27 H 1.08994 * 109.47402 * 298.57714 * 1 2 3 28 28 H 1.09000 * 109.47059 * 58.58775 * 1 2 3 29 29 H 1.09006 * 109.46595 * 178.58370 * 1 2 3 30 30 H 1.08999 * 109.47001 * 181.41426 * 3 2 1 31 31 H 1.09001 * 109.47391 * 301.41681 * 3 2 1 32 32 H 1.09003 * 109.46791 * 61.41960 * 3 2 1 33 33 H 1.09000 * 110.48731 * 22.99603 * 4 2 1 34 34 H 1.09000 * 110.48939 * 145.51131 * 4 2 1 35 35 H 1.09000 * 110.75195 * 80.36759 * 5 4 2 36 36 H 1.08998 * 110.75724 * 203.74222 * 5 4 2 37 37 H 1.09004 * 110.48455 * 279.25923 * 6 5 4 38 38 H 1.08998 * 110.48885 * 156.61793 * 6 5 4 39 39 H 0.97001 * 120.00319 * 325.00552 * 9 7 2 40 40 H 1.08002 * 119.74498 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.88478 * 180.27917 * 15 14 13 42 42 H 1.08007 * 120.12793 * 179.70647 * 16 15 14 43 43 H 0.96998 * 120.00157 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.13090 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 2.3282 -2.1901 -0.7192 6 6 2.8876 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2337 8 1 1.2230 -1.1196 1.8322 9 7 2.9033 0.1312 2.0384 10 16 2.9030 0.0009 3.6893 11 8 3.8378 0.9584 4.1675 12 8 1.5398 -0.0218 4.0898 13 6 3.5650 -1.5827 4.0876 14 6 2.7185 -2.6738 4.2119 15 6 3.2258 -3.9266 4.5192 16 6 4.5774 -4.0981 4.7155 17 6 5.4452 -2.9970 4.5976 18 6 6.8353 -3.1611 4.7976 19 1 7.5316 -2.4744 4.3394 20 6 7.3088 -4.2135 5.5894 21 7 6.4994 -4.8278 6.4132 22 14 9.0969 -4.7408 5.4699 23 1 9.9067 -3.9701 6.4474 24 1 9.2064 -6.1909 5.7705 25 1 9.5990 -4.4807 4.0968 26 6 4.9194 -1.7309 4.2796 27 1 -0.3634 0.4915 0.9024 28 1 -0.3633 0.5356 -0.8771 29 1 -0.3633 -1.0274 -0.0254 30 1 3.1442 1.4264 -0.0254 31 1 1.6760 1.9623 -0.8770 32 1 1.7173 1.9472 0.9025 33 1 1.3062 -0.7696 -2.0255 34 1 2.9799 -0.2985 -1.5981 35 1 1.4033 -2.7651 -0.6752 36 1 3.0678 -2.6929 -1.3423 37 1 3.9441 -1.6765 0.6571 38 1 2.7403 -2.8196 1.3309 39 1 3.4637 0.7933 1.6043 40 1 1.6561 -2.5474 4.0642 41 1 2.5579 -4.7704 4.6092 42 1 4.9702 -5.0742 4.9596 43 1 6.8275 -5.5575 6.9617 44 1 5.5766 -0.8789 4.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619489750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:32 Heat of formation + Delta-G solvation = -75.789883 kcal Electronic energy + Delta-G solvation = -26203.739880 eV Core-core repulsion = 22632.685911 eV Total energy + Delta-G solvation = -3571.053970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.53601 -37.62877 -36.60119 -35.26228 -33.84537 -33.43920 -32.23067 -30.07052 -29.77401 -27.69222 -26.88734 -25.47482 -24.30660 -21.88189 -20.99039 -20.72307 -19.11970 -18.93594 -17.98898 -16.99277 -16.13746 -15.89489 -15.22824 -15.09451 -14.84644 -14.70797 -14.33093 -13.52721 -13.50274 -13.34413 -13.13586 -12.95065 -12.62002 -12.54669 -12.23542 -11.91992 -11.64550 -11.56136 -11.49911 -11.44298 -11.37748 -11.34012 -11.04000 -10.94963 -10.89323 -10.86302 -10.60389 -10.57056 -10.55127 -10.44600 -9.77714 -9.64441 -9.33760 -9.06431 -8.01876 -7.68763 -6.91747 -4.52780 1.07187 2.21748 2.64220 2.99889 3.01807 3.08242 3.60088 3.83238 4.26205 4.39761 4.47071 4.56535 4.71868 5.03044 5.18846 5.29843 5.34723 5.35175 5.38685 5.43478 5.58183 5.63155 5.72797 5.75838 5.84080 5.89750 5.97555 6.03765 6.05594 6.14741 6.18652 6.20017 6.34016 6.42384 6.54603 6.66466 6.76972 6.86255 7.03857 7.21637 7.28365 7.39809 7.73300 7.81160 7.95125 8.40696 8.67748 8.72629 10.03974 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.003936 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.997715 B = 7112.756426 C = 7550.654811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.143 4.143 7 C 0.158 3.842 8 H 0.095 0.905 9 N -1.115 6.115 10 S 2.684 3.316 11 O -0.975 6.975 12 O -0.976 6.976 13 C -0.628 4.628 14 C -0.146 4.146 15 C -0.121 4.121 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.462 4.462 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.124 4.124 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.413 0.587 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.283 0.717 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 4.223 -13.219 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.182 4.182 7 C 0.050 3.950 8 H 0.113 0.887 9 N -0.873 5.873 10 S 2.780 3.220 11 O -0.965 6.965 12 O -0.966 6.966 13 C -0.720 4.720 14 C -0.168 4.168 15 C -0.140 4.140 16 C -0.137 4.137 17 C 0.089 3.911 18 C -0.491 4.491 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.145 4.145 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.250 0.750 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.383 4.602 -12.342 15.100 hybrid contribution 1.404 -0.823 -0.100 1.631 sum -5.980 3.778 -12.443 14.313 Atomic orbital electron populations 1.21923 0.93879 1.02036 1.01973 1.21381 0.95911 0.95591 0.94541 1.21869 1.00756 0.95277 1.01896 1.22486 1.00746 0.95548 0.96416 1.22444 1.00858 0.96433 0.96353 1.22944 1.00526 0.98529 0.96248 1.21491 0.92322 0.88998 0.92149 0.88690 1.55847 1.57141 1.48332 1.26016 1.01771 0.73504 0.74741 0.72002 1.93536 1.64146 1.60464 1.78387 1.93507 1.34825 1.87641 1.80659 1.29713 1.03783 1.19232 1.19244 1.20047 0.96721 0.92575 1.07414 1.20793 0.95743 0.95840 1.01630 1.21618 0.92189 0.99432 1.00507 1.17663 0.93651 0.90215 0.89558 1.19592 0.92101 1.10715 1.26676 0.90023 1.25924 1.00401 0.94953 0.92988 1.69779 1.37623 1.18447 1.16061 0.86270 0.81892 0.78366 0.80028 1.19326 1.20009 1.18349 1.20732 0.91607 0.97279 1.04862 0.92123 0.92604 0.92296 0.92350 0.92618 0.92031 0.91661 0.91453 0.91454 0.91485 0.90423 0.90283 0.75018 0.87768 0.88492 0.85872 0.90574 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.15 37.16 0.30 -1.04 16 2 C -0.07 -0.75 0.94 -153.39 -0.14 -0.89 16 3 C -0.14 -1.35 7.12 37.16 0.26 -1.09 16 4 C -0.11 -1.04 5.90 -25.07 -0.15 -1.19 16 5 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 6 C -0.14 -1.83 6.53 -25.07 -0.16 -1.99 16 7 C 0.16 2.03 3.21 -66.81 -0.21 1.82 16 8 H 0.10 1.30 7.07 -51.93 -0.37 0.94 16 9 N -1.11 -15.88 4.67 -3.94 -0.02 -15.89 16 10 S 2.68 50.55 5.71 -107.50 -0.61 49.94 16 11 O -0.97 -20.84 17.27 -57.17 -0.99 -21.82 16 12 O -0.98 -20.02 16.62 -57.17 -0.95 -20.97 16 13 C -0.63 -13.51 5.94 -39.66 -0.24 -13.75 16 14 C -0.15 -3.10 9.46 -39.29 -0.37 -3.47 16 15 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 16 C -0.12 -2.89 8.70 -38.87 -0.34 -3.22 16 17 C 0.09 2.37 5.57 -106.82 -0.60 1.77 16 18 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 19 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 20 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 21 N -0.79 -19.80 10.97 55.55 0.61 -19.19 16 22 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C -0.12 -2.94 9.26 -38.87 -0.36 -3.30 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.53 6.84 -51.93 -0.36 0.17 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 7.80 -51.93 -0.41 0.23 16 33 H 0.06 0.52 7.84 -51.93 -0.41 0.12 16 34 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 38 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 39 H 0.41 5.03 6.42 -34.47 -0.22 4.81 16 40 H 0.10 2.00 7.59 -52.49 -0.40 1.61 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.12 3.09 6.18 -52.48 -0.32 2.76 16 43 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 44 H 0.11 2.54 7.60 -52.48 -0.40 2.14 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -29.82 362.48 -11.16 -40.98 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.63 Total: 9.75 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: -3.00 Total: -41.22 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.59 Total: -35.08 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.94 Total: -42.80 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: 50.55 SS G_CDS: -0.61 Total: 49.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.82 -11.16 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619489750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.812 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds