Wall clock time and date at job start Tue Mar 31 2020 14:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 110.05136 * 2 1 4 4 C 1.54265 * 110.03523 * 238.58749 * 2 1 3 5 5 C 1.54892 * 104.19566 * 264.32052 * 4 2 1 6 6 C 1.54890 * 102.74746 * 322.05935 * 5 4 2 7 7 C 1.53871 * 110.03406 * 121.41474 * 2 1 3 8 8 H 1.08996 * 110.03438 * 0.02562 * 7 2 1 9 9 N 1.46499 * 110.03388 * 238.57046 * 7 2 1 10 10 S 1.65602 * 119.99830 * 144.99826 * 9 7 2 11 11 O 1.42104 * 106.40114 * 178.54427 * 10 9 7 12 12 O 1.42098 * 106.40525 * 311.46593 * 10 9 7 13 13 C 1.76200 * 107.21603 * 65.00621 * 10 9 7 14 14 C 1.38660 * 119.87561 * 269.72507 * 13 10 9 15 15 C 1.38604 * 120.50496 * 179.72481 * 14 13 10 16 16 C 1.37646 * 120.24420 * 0.54816 * 15 14 13 17 17 C 1.40697 * 119.74619 * 359.72785 * 16 15 14 18 18 C 1.41397 * 120.24393 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99731 * 155.18496 * 18 17 16 20 20 C 1.39948 * 119.99832 * 335.18153 * 18 17 16 21 21 N 1.30820 * 120.00295 * 342.35895 * 20 18 17 22 22 Si 1.86802 * 119.99562 * 162.36552 * 20 18 17 23 23 H 1.48498 * 109.47242 * 90.00130 * 22 20 18 24 24 H 1.48501 * 109.46723 * 209.99867 * 22 20 18 25 25 H 1.48499 * 109.47123 * 329.99539 * 22 20 18 26 26 C 1.37594 * 119.87835 * 90.00011 * 13 10 9 27 27 H 1.08994 * 109.47402 * 298.57714 * 1 2 3 28 28 H 1.09000 * 109.47059 * 58.58775 * 1 2 3 29 29 H 1.09006 * 109.46595 * 178.58370 * 1 2 3 30 30 H 1.08999 * 109.47001 * 181.41426 * 3 2 1 31 31 H 1.09001 * 109.47391 * 301.41681 * 3 2 1 32 32 H 1.09003 * 109.46791 * 61.41960 * 3 2 1 33 33 H 1.09000 * 110.48731 * 22.99603 * 4 2 1 34 34 H 1.09000 * 110.48939 * 145.51131 * 4 2 1 35 35 H 1.09000 * 110.75195 * 80.36759 * 5 4 2 36 36 H 1.08998 * 110.75724 * 203.74222 * 5 4 2 37 37 H 1.09004 * 110.48455 * 279.25923 * 6 5 4 38 38 H 1.08998 * 110.48885 * 156.61793 * 6 5 4 39 39 H 0.97001 * 120.00319 * 325.00552 * 9 7 2 40 40 H 1.08002 * 119.74498 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.88478 * 180.27917 * 15 14 13 42 42 H 1.08007 * 120.12793 * 179.70647 * 16 15 14 43 43 H 0.96998 * 120.00157 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.13090 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 2.3282 -2.1901 -0.7192 6 6 2.8876 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2337 8 1 1.2230 -1.1196 1.8322 9 7 2.9033 0.1312 2.0384 10 16 2.9030 0.0009 3.6893 11 8 3.8378 0.9584 4.1675 12 8 1.5398 -0.0218 4.0898 13 6 3.5650 -1.5827 4.0876 14 6 2.7185 -2.6738 4.2119 15 6 3.2258 -3.9266 4.5192 16 6 4.5774 -4.0981 4.7155 17 6 5.4452 -2.9970 4.5976 18 6 6.8353 -3.1611 4.7976 19 1 7.5316 -2.4744 4.3394 20 6 7.3088 -4.2135 5.5894 21 7 6.4994 -4.8278 6.4132 22 14 9.0969 -4.7408 5.4699 23 1 9.9067 -3.9701 6.4474 24 1 9.2064 -6.1909 5.7705 25 1 9.5990 -4.4807 4.0968 26 6 4.9194 -1.7309 4.2796 27 1 -0.3634 0.4915 0.9024 28 1 -0.3633 0.5356 -0.8771 29 1 -0.3633 -1.0274 -0.0254 30 1 3.1442 1.4264 -0.0254 31 1 1.6760 1.9623 -0.8770 32 1 1.7173 1.9472 0.9025 33 1 1.3062 -0.7696 -2.0255 34 1 2.9799 -0.2985 -1.5981 35 1 1.4033 -2.7651 -0.6752 36 1 3.0678 -2.6929 -1.3423 37 1 3.9441 -1.6765 0.6571 38 1 2.7403 -2.8196 1.3309 39 1 3.4637 0.7933 1.6043 40 1 1.6561 -2.5474 4.0642 41 1 2.5579 -4.7704 4.6092 42 1 4.9702 -5.0742 4.9596 43 1 6.8275 -5.5575 6.9617 44 1 5.5766 -0.8789 4.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619489750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:32 Heat of formation + Delta-G solvation = -93.153832 kcal Electronic energy + Delta-G solvation = -26204.492837 eV Core-core repulsion = 22632.685911 eV Total energy + Delta-G solvation = -3571.806927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45690 -39.43633 -38.24472 -36.91407 -35.66922 -34.57114 -33.07845 -31.91011 -31.57080 -28.52430 -27.78317 -27.33219 -25.17339 -23.66029 -22.80068 -21.65366 -20.63203 -19.89698 -19.66298 -18.46701 -17.71568 -17.28380 -16.82198 -16.56587 -16.20507 -16.04611 -15.38312 -15.25676 -15.04684 -14.35099 -14.30780 -14.04448 -13.90760 -13.69436 -13.62470 -13.28243 -13.20448 -13.07193 -13.06296 -13.02361 -12.85394 -12.58618 -12.56158 -12.41083 -12.20503 -11.89150 -11.76981 -11.56123 -11.48055 -11.34415 -11.33375 -11.26288 -11.13272 -10.31694 -9.82739 -9.54482 -8.73014 -6.44936 -0.47957 0.42078 0.85304 1.36784 1.44185 1.51870 2.13617 2.18427 2.55264 2.79531 3.44184 3.51136 3.55435 3.73258 3.90787 4.26149 4.32851 4.42053 4.45201 4.46822 4.48877 4.52662 4.68254 4.82024 4.84721 4.90310 4.90954 4.97520 5.05514 5.09020 5.14676 5.16213 5.20743 5.27158 5.30405 5.41670 5.43420 5.48402 5.54447 5.57547 5.61274 5.89298 5.94085 6.10651 6.15014 6.52946 6.80273 6.85292 8.25262 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.003936 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.997715 B = 7112.756426 C = 7550.654811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.147 4.147 7 C 0.149 3.851 8 H 0.087 0.913 9 N -1.096 6.096 10 S 2.711 3.289 11 O -1.000 7.000 12 O -0.988 6.988 13 C -0.632 4.632 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.138 4.138 17 C 0.065 3.935 18 C -0.500 4.500 19 H 0.079 0.921 20 C 0.037 3.963 21 N -0.825 5.825 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.264 1.264 25 H -0.257 1.257 26 C -0.144 4.144 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.425 0.575 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.291 0.709 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 4.446 -15.151 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.186 4.186 7 C 0.042 3.958 8 H 0.105 0.895 9 N -0.860 5.860 10 S 2.804 3.196 11 O -0.990 6.990 12 O -0.978 6.978 13 C -0.722 4.722 14 C -0.163 4.163 15 C -0.140 4.140 16 C -0.158 4.158 17 C 0.062 3.938 18 C -0.529 4.529 19 H 0.097 0.903 20 C -0.178 4.178 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.188 1.188 25 H -0.181 1.181 26 C -0.165 4.165 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.265 0.735 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.121 4.808 -14.267 17.106 hybrid contribution 1.489 -0.839 0.452 1.768 sum -6.632 3.969 -13.815 15.830 Atomic orbital electron populations 1.21943 0.93097 1.02525 1.02311 1.21395 0.96500 0.95761 0.93459 1.21920 1.01093 0.94858 1.02409 1.22471 1.01575 0.94294 0.96163 1.22440 1.01240 0.97532 0.94400 1.22927 1.00075 0.97657 0.97977 1.21761 0.91810 0.89239 0.92988 0.89463 1.55490 1.57521 1.48736 1.24242 1.00960 0.72551 0.73152 0.72961 1.93496 1.64894 1.60795 1.79862 1.93488 1.35158 1.87406 1.81769 1.30164 1.03015 1.21067 1.17903 1.20387 0.97848 0.92174 1.05893 1.21109 0.95212 0.97256 1.00425 1.21614 0.93329 0.98794 1.02067 1.18003 0.94312 0.91203 0.90300 1.19858 0.92470 1.12292 1.28265 0.90278 1.26754 1.04818 0.94301 0.91952 1.69820 1.39690 1.18988 1.16593 0.85190 0.76177 0.78325 0.79987 1.18898 1.18793 1.18055 1.20785 0.92751 0.96776 1.06150 0.93358 0.90638 0.91877 0.91984 0.90637 0.93000 0.89659 0.90918 0.90598 0.90832 0.91502 0.92247 0.73524 0.85414 0.85664 0.87033 0.89783 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.15 71.98 0.59 -1.73 16 2 C -0.07 -1.25 0.94 -51.46 -0.05 -1.30 16 3 C -0.15 -2.43 7.12 71.98 0.51 -1.91 16 4 C -0.11 -1.62 5.90 31.67 0.19 -1.43 16 5 C -0.12 -2.13 6.91 31.89 0.22 -1.91 16 6 C -0.15 -3.64 6.53 31.67 0.21 -3.43 16 7 C 0.15 3.64 3.21 45.72 0.15 3.78 16 8 H 0.09 2.29 7.07 -2.39 -0.02 2.27 16 9 N -1.10 -30.33 4.67 -166.38 -0.78 -31.10 16 10 S 2.71 101.41 5.71 -56.49 -0.32 101.09 16 11 O -1.00 -42.90 17.27 -128.00 -2.21 -45.11 16 12 O -0.99 -39.66 16.62 -128.00 -2.13 -41.79 16 13 C -0.63 -27.50 5.94 22.22 0.13 -27.37 16 14 C -0.14 -5.98 9.46 22.46 0.21 -5.77 16 15 C -0.12 -5.32 10.02 22.22 0.22 -5.10 16 16 C -0.14 -6.99 8.70 22.73 0.20 -6.79 16 17 C 0.06 3.45 5.57 -21.29 -0.12 3.33 16 18 C -0.50 -26.54 9.05 23.46 0.21 -26.33 16 19 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 20 C 0.04 1.83 5.14 85.26 0.44 2.26 16 21 N -0.83 -42.12 10.97 21.83 0.24 -41.88 16 22 Si 0.98 37.28 29.59 68.60 2.03 39.31 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 26 C -0.14 -7.08 9.26 22.73 0.21 -6.86 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.96 16 30 H 0.06 0.98 6.84 -2.39 -0.02 0.96 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.97 7.80 -2.39 -0.02 0.95 16 33 H 0.08 1.00 7.84 -2.39 -0.02 0.99 16 34 H 0.07 1.05 7.83 -2.39 -0.02 1.03 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 38 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 39 H 0.43 9.90 6.42 -96.74 -0.62 9.27 16 40 H 0.13 4.73 7.59 -2.91 -0.02 4.71 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.11 5.81 6.18 -2.91 -0.02 5.79 16 43 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 44 H 0.11 5.16 7.60 -2.91 -0.02 5.14 16 Total: -1.00 -65.14 362.48 0.53 -64.61 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.38 Total: 35.44 kcal Atomic # 6 Polarization: -83.88 SS G_CDS: 3.32 Total: -80.56 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -0.54 Total: -72.99 kcal Atomic # 8 Polarization: -82.56 SS G_CDS: -4.34 Total: -86.90 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 101.41 SS G_CDS: -0.32 Total: 101.09 kcal Total: -65.14 0.53 -64.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619489750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.541 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds