Wall clock time and date at job start Tue Mar 31 2020 14:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.02014 * 2 1 4 4 C 1.54270 * 110.02908 * 121.39483 * 2 1 3 5 5 C 1.54892 * 104.19544 * 142.89544 * 4 2 1 6 6 C 1.54889 * 102.74595 * 322.05530 * 5 4 2 7 7 H 1.08999 * 110.48835 * 279.26027 * 6 5 4 8 8 N 1.46504 * 110.48608 * 156.75463 * 6 5 4 9 9 S 1.65607 * 119.99864 * 96.45203 * 8 6 5 10 10 O 1.42103 * 106.39975 * 178.53738 * 9 8 6 11 11 O 1.42094 * 106.40038 * 311.45993 * 9 8 6 12 12 C 1.76204 * 107.21812 * 65.00133 * 9 8 6 13 13 C 1.38660 * 119.87314 * 269.72596 * 12 9 8 14 14 C 1.38606 * 120.49891 * 179.72203 * 13 12 9 15 15 C 1.37640 * 120.25171 * 0.55279 * 14 13 12 16 16 C 1.40702 * 119.74062 * 359.72604 * 15 14 13 17 17 C 1.41395 * 120.24502 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00142 * 204.37095 * 17 16 15 19 19 C 1.39946 * 119.99848 * 24.36700 * 17 16 15 20 20 N 1.30822 * 120.00075 * 17.88397 * 19 17 16 21 21 Si 1.86805 * 119.99877 * 197.88410 * 19 17 16 22 22 H 1.48505 * 109.47074 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47318 * 120.00142 * 21 19 17 24 24 H 1.48498 * 109.46846 * 240.00020 * 21 19 17 25 25 C 1.37595 * 119.87601 * 89.99854 * 12 9 8 26 26 C 1.53877 * 110.03230 * 238.60588 * 2 1 3 27 27 H 1.08999 * 109.47170 * 60.70185 * 1 2 3 28 28 H 1.08997 * 109.47227 * 180.70061 * 1 2 3 29 29 H 1.09000 * 109.46926 * 300.69862 * 1 2 3 30 30 H 1.09000 * 109.46374 * 59.29726 * 3 2 1 31 31 H 1.08997 * 109.47397 * 179.29914 * 3 2 1 32 32 H 1.08996 * 109.46800 * 299.29974 * 3 2 1 33 33 H 1.09005 * 110.48313 * 261.56606 * 4 2 1 34 34 H 1.08994 * 110.49139 * 24.21280 * 4 2 1 35 35 H 1.08998 * 110.75674 * 80.36491 * 5 4 2 36 36 H 1.08996 * 110.75651 * 203.55382 * 5 4 2 37 37 H 0.97003 * 120.00150 * 276.45122 * 8 6 5 38 38 H 1.08004 * 119.74839 * 0.02562 * 13 12 9 39 39 H 1.08001 * 119.87940 * 180.25904 * 14 13 12 40 40 H 1.07997 * 120.13395 * 179.74943 * 15 14 13 41 41 H 0.97003 * 120.00140 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.12610 * 0.02562 * 25 12 9 43 43 H 1.09002 * 110.03041 * 0.02562 * 26 2 1 44 44 H 1.09003 * 110.02720 * 121.43199 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 2.0584 -0.7550 1.2372 5 6 3.3136 -1.5005 0.7198 6 6 2.8874 -1.9410 -0.7027 7 1 2.2771 -2.8429 -0.6559 8 7 4.0652 -2.1636 -1.5450 9 16 4.6716 -3.6931 -1.7330 10 8 5.7749 -3.5809 -2.6215 11 8 4.7775 -4.2459 -0.4283 12 6 3.4478 -4.6394 -2.5765 13 6 2.4917 -5.3348 -1.8519 14 6 1.5196 -6.0785 -2.5023 15 6 1.5003 -6.1436 -3.8770 16 6 2.4690 -5.4466 -4.6224 17 6 2.4589 -5.5056 -6.0351 18 1 3.3686 -5.3279 -6.5895 19 6 1.2702 -5.7942 -6.7148 20 7 0.1201 -5.6661 -6.1047 21 14 1.3257 -6.3625 -8.4935 22 1 2.7376 -6.4249 -8.9494 23 1 0.7098 -7.7093 -8.6023 24 1 0.5737 -5.4043 -9.3429 25 6 3.4478 -4.6900 -3.9515 26 6 2.0571 -0.7531 -1.2340 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 1.6851 1.9585 0.8837 31 1 3.1437 1.4272 0.0126 32 1 1.7057 1.9510 -0.8962 33 1 2.3297 -0.0528 2.0255 34 1 1.3142 -1.4653 1.5973 35 1 4.1709 -0.8289 0.6755 36 1 3.5344 -2.3655 1.3452 37 1 4.4899 -1.4151 -1.9926 38 1 2.5017 -5.2926 -0.7728 39 1 0.7772 -6.6129 -1.9281 40 1 0.7444 -6.7269 -4.3817 41 1 -0.7039 -5.8658 -6.5760 42 1 4.1963 -4.1515 -4.5137 43 1 1.2229 -1.1182 -1.8331 44 1 2.6867 -0.0946 -1.8324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:42 Heat of formation + Delta-G solvation = -85.160652 kcal Electronic energy + Delta-G solvation = -25728.292472 eV Core-core repulsion = 22156.832155 eV Total energy + Delta-G solvation = -3571.460317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.27744 -37.64485 -36.61244 -35.26846 -34.53454 -33.85659 -30.68375 -30.08827 -29.79458 -28.03232 -27.38794 -25.50429 -24.10871 -21.90981 -21.07379 -20.72581 -19.24766 -18.73968 -17.94791 -17.05115 -16.13177 -15.91668 -15.19060 -15.08334 -14.83633 -14.61964 -14.11908 -13.75788 -13.51693 -13.41777 -13.34147 -12.99502 -12.59697 -12.29579 -12.29310 -11.92605 -11.82203 -11.58973 -11.58598 -11.51080 -11.38859 -11.38289 -11.04903 -10.98898 -10.93522 -10.85160 -10.60869 -10.59357 -10.49744 -10.40467 -9.78069 -9.63950 -9.36682 -9.08584 -8.04492 -7.71472 -6.94323 -4.54625 1.06473 2.19338 2.61576 2.99488 3.03346 3.06449 3.58435 3.82055 4.24054 4.41330 4.51483 4.56220 4.70200 5.01724 5.15213 5.24351 5.31107 5.39416 5.41484 5.43525 5.56883 5.58188 5.64439 5.75900 5.83458 5.89906 5.98245 6.01661 6.04628 6.13411 6.16445 6.18172 6.33819 6.39719 6.49454 6.64882 6.75442 6.84678 7.02167 7.20132 7.27867 7.37893 7.71877 7.80332 7.93501 8.39581 8.65890 8.70934 10.01098 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014101 B = 0.003918 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.140642 B = 7144.263080 C = 8061.224330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.115 4.115 5 C -0.140 4.140 6 C 0.152 3.848 7 H 0.095 0.905 8 N -1.113 6.113 9 S 2.687 3.313 10 O -0.975 6.975 11 O -0.973 6.973 12 C -0.631 4.631 13 C -0.151 4.151 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.123 4.123 26 C -0.121 4.121 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.283 0.717 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 10.144 9.207 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.153 4.153 5 C -0.179 4.179 6 C 0.044 3.956 7 H 0.113 0.887 8 N -0.869 5.869 9 S 2.783 3.217 10 O -0.966 6.966 11 O -0.963 6.963 12 C -0.723 4.723 13 C -0.172 4.172 14 C -0.139 4.139 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.246 0.754 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.375 9.706 9.544 13.618 hybrid contribution -0.726 -0.063 -1.451 1.624 sum -1.102 9.643 8.093 12.637 Atomic orbital electron populations 1.21937 0.94350 1.02057 1.01458 1.21150 0.95486 0.95323 0.95087 1.21905 1.00931 0.95165 1.01440 1.22468 0.97319 0.98799 0.96704 1.22999 0.97866 1.00741 0.96320 1.21597 0.85471 0.99413 0.89081 0.88712 1.55662 1.42575 1.26294 1.62405 1.01713 0.73888 0.72532 0.73597 1.93533 1.50510 1.86027 1.66516 1.93513 1.86278 1.77536 1.39011 1.29757 1.18601 1.18375 1.05567 1.20084 0.96885 1.03040 0.97221 1.20804 0.97956 1.00049 0.95129 1.21633 1.00653 0.99319 0.92277 1.17689 0.90693 0.89196 0.93601 1.19662 0.95905 1.42070 0.91306 0.89870 1.25931 0.94745 0.92521 1.01055 1.69787 0.98734 1.34434 1.38945 0.86217 0.79881 0.79099 0.81365 1.18189 1.19575 1.19858 1.20778 1.01357 1.01270 0.91071 1.22606 0.99970 0.96304 0.97149 0.92668 0.92246 0.92880 0.92882 0.92568 0.92741 0.91513 0.91180 0.91029 0.90370 0.75420 0.87617 0.88415 0.85767 0.90641 0.87086 0.90552 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.16 37.16 0.30 -1.01 16 2 C -0.07 -0.68 0.94 -153.39 -0.14 -0.83 16 3 C -0.14 -1.18 8.14 37.16 0.30 -0.87 16 4 C -0.11 -1.13 5.90 -25.07 -0.15 -1.28 16 5 C -0.14 -1.65 6.58 -24.74 -0.16 -1.81 16 6 C 0.15 2.03 3.39 -66.22 -0.22 1.80 16 7 H 0.09 1.37 7.38 -51.93 -0.38 0.99 16 8 N -1.11 -16.17 5.60 -3.43 -0.02 -16.19 16 9 S 2.69 50.43 5.67 -107.50 -0.61 49.82 16 10 O -0.98 -20.64 17.26 -57.17 -0.99 -21.63 16 11 O -0.97 -19.64 17.02 -57.17 -0.97 -20.61 16 12 C -0.63 -13.72 5.85 -39.66 -0.23 -13.95 16 13 C -0.15 -3.24 8.97 -39.29 -0.35 -3.59 16 14 C -0.12 -2.67 10.02 -39.66 -0.40 -3.06 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 16 C 0.09 2.36 5.58 -106.82 -0.60 1.76 16 17 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 18 H 0.08 2.06 7.91 -52.48 -0.42 1.65 16 19 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.44 10.95 55.55 0.61 -18.83 16 21 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.12 -2.96 9.26 -38.87 -0.36 -3.32 16 26 C -0.12 -1.41 5.85 -25.56 -0.15 -1.56 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 34 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.41 5.02 8.60 -34.48 -0.30 4.72 16 38 H 0.11 2.04 7.59 -52.48 -0.40 1.64 16 39 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 41 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 42 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 43 H 0.08 0.95 7.67 -51.93 -0.40 0.56 16 44 H 0.07 0.79 7.32 -51.93 -0.38 0.41 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -29.63 366.33 -11.17 -40.80 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.75 Total: 9.59 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: -2.93 Total: -41.40 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.59 Total: -35.02 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.96 Total: -42.24 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.61 Total: 49.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.63 -11.17 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.363 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds