Wall clock time and date at job start Tue Mar 31 2020 13:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 112.85153 * 2 1 4 4 C 1.53786 * 113.61404 * 131.19054 * 2 1 3 5 5 C 1.53781 * 87.08228 * 139.98386 * 4 2 1 6 6 C 1.53002 * 113.61767 * 219.94016 * 5 4 2 7 7 N 1.46496 * 109.47388 * 183.47061 * 6 5 4 8 8 S 1.65594 * 119.99828 * 164.99817 * 7 6 5 9 9 O 1.42104 * 106.40083 * 178.54057 * 8 7 6 10 10 O 1.42095 * 106.40581 * 311.46040 * 8 7 6 11 11 C 1.76203 * 107.21888 * 64.99934 * 8 7 6 12 12 C 1.38651 * 119.87730 * 269.72296 * 11 8 7 13 13 C 1.38617 * 120.50218 * 179.72003 * 12 11 8 14 14 C 1.37635 * 120.24497 * 0.56038 * 13 12 11 15 15 C 1.40692 * 119.74752 * 359.71983 * 14 13 12 16 16 C 1.41400 * 120.24622 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00219 * 155.25802 * 16 15 14 18 18 C 1.39942 * 119.99637 * 335.25950 * 16 15 14 19 19 N 1.30823 * 120.00286 * 342.23121 * 18 16 15 20 20 Si 1.86799 * 119.99855 * 162.24243 * 18 16 15 21 21 H 1.48506 * 109.47109 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47493 * 119.99604 * 20 18 16 23 23 H 1.48505 * 109.46655 * 239.99542 * 20 18 16 24 24 C 1.37599 * 119.87331 * 90.00228 * 11 8 7 25 25 C 1.53778 * 113.61835 * 228.68759 * 2 1 3 26 26 H 1.08995 * 109.47430 * 288.80725 * 1 2 3 27 27 H 1.09010 * 109.46746 * 48.80712 * 1 2 3 28 28 H 1.08994 * 109.46961 * 168.80265 * 1 2 3 29 29 H 1.08994 * 109.46974 * 191.19546 * 3 2 1 30 30 H 1.08999 * 109.46722 * 311.19288 * 3 2 1 31 31 H 1.08992 * 109.46735 * 71.19158 * 3 2 1 32 32 H 1.09000 * 113.61168 * 25.43856 * 4 2 1 33 33 H 1.08998 * 113.61749 * 254.53608 * 4 2 1 34 34 H 1.08996 * 113.61744 * 89.11830 * 5 4 2 35 35 H 1.08998 * 109.46783 * 303.47105 * 6 5 4 36 36 H 1.08999 * 109.47305 * 63.46686 * 6 5 4 37 37 H 0.97000 * 120.00227 * 344.99723 * 7 6 5 38 38 H 1.08001 * 119.74966 * 0.02562 * 12 11 8 39 39 H 1.07995 * 119.87232 * 180.25731 * 13 12 11 40 40 H 1.08005 * 120.12688 * 179.74696 * 14 13 12 41 41 H 0.97000 * 120.00212 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.13099 * 359.97438 * 24 11 8 43 43 H 1.09011 * 113.61399 * 105.47111 * 25 2 1 44 44 H 1.09000 * 113.61656 * 334.57299 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0604 5 6 3.1924 -1.3136 0.0015 6 6 3.5476 -2.8018 0.0043 7 7 4.6060 -3.0531 -0.9769 8 16 5.4480 -4.4785 -0.9397 9 8 6.3656 -4.4309 -2.0237 10 8 5.8487 -4.6728 0.4097 11 6 4.3065 -5.7685 -1.3103 12 6 3.6147 -6.3944 -0.2846 13 6 2.7093 -7.4068 -0.5619 14 6 2.4961 -7.8096 -1.8606 15 6 3.1968 -7.1856 -2.9090 16 6 2.9855 -7.5907 -4.2471 17 1 3.1816 -6.9035 -5.0568 18 6 2.5222 -8.8823 -4.5223 19 7 2.6118 -9.8172 -3.6116 20 14 1.7761 -9.2713 -6.1900 21 1 1.7902 -8.0506 -7.0356 22 1 2.5686 -10.3401 -6.8498 23 1 0.3760 -9.7326 -6.0104 24 6 4.1092 -6.1549 -2.6161 25 6 2.1461 -0.9302 -1.0583 26 1 -0.3634 0.3313 0.9727 27 1 -0.3633 0.6769 -0.7734 28 1 -0.3633 -1.0081 -0.1996 29 1 3.1942 1.3533 -0.1995 30 1 1.6415 2.0076 -0.7733 31 1 1.9599 1.8734 0.9727 32 1 1.4945 -1.7522 1.3507 33 1 2.5649 -0.3969 1.9151 34 1 4.0711 -0.6687 0.0008 35 1 3.8956 -3.0903 0.9961 36 1 2.6651 -3.3865 -0.2554 37 1 4.8136 -2.3846 -1.6484 38 1 3.7788 -6.0875 0.7378 39 1 2.1729 -7.8845 0.2446 40 1 1.7932 -8.6014 -2.0741 41 1 2.2911 -10.7125 -3.8025 42 1 4.6522 -5.6689 -3.4132 43 1 2.5651 -0.4008 -1.9141 44 1 1.4946 -1.7549 -1.3472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619498755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:55 Heat of formation + Delta-G solvation = -58.081953 kcal Electronic energy + Delta-G solvation = -25133.987118 eV Core-core repulsion = 21563.701021 eV Total energy + Delta-G solvation = -3570.286096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98776 -37.63614 -36.63562 -35.27408 -34.94510 -33.84050 -30.83761 -30.07608 -29.78582 -27.64547 -25.98125 -25.70435 -25.47027 -21.90600 -21.10073 -20.86939 -19.06359 -18.39864 -17.93216 -16.94957 -16.21895 -15.92723 -15.32569 -15.06103 -14.86386 -14.55427 -14.45382 -14.07253 -13.78918 -13.46105 -13.33483 -12.97796 -12.86542 -12.58842 -12.25604 -12.00510 -11.92450 -11.77102 -11.56280 -11.53701 -11.49959 -11.40209 -11.34325 -11.03525 -10.97688 -10.87250 -10.66942 -10.58667 -10.19766 -10.06427 -9.77150 -9.65574 -9.35693 -9.11463 -8.03389 -7.70007 -6.92382 -4.53442 1.05838 2.20497 2.62569 3.00115 3.03671 3.06694 3.59321 3.83060 4.25986 4.30420 4.41764 4.47494 4.50659 4.63869 4.95353 5.03998 5.23204 5.28591 5.38055 5.42116 5.43645 5.57527 5.63592 5.69276 5.69855 5.74531 5.79449 5.88639 5.94921 6.03396 6.04895 6.14266 6.19136 6.29348 6.43776 6.65871 6.76125 6.85292 7.03400 7.20651 7.26677 7.38896 7.72485 7.80749 7.94323 8.40291 8.67081 8.71911 10.03401 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.003491 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.586146 B = 8018.867973 C = 9053.076336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.116 4.116 6 C 0.129 3.871 7 N -1.120 6.120 8 S 2.689 3.311 9 O -0.974 6.974 10 O -0.976 6.976 11 C -0.631 4.631 12 C -0.149 4.149 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.091 3.909 16 C -0.461 4.461 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.271 1.271 24 C -0.124 4.124 25 C -0.128 4.128 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.283 0.717 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 15.513 5.673 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C -0.185 4.185 4 C -0.163 4.163 5 C -0.136 4.136 6 C 0.003 3.997 7 N -0.878 5.878 8 S 2.785 3.215 9 O -0.964 6.964 10 O -0.966 6.966 11 C -0.723 4.723 12 C -0.170 4.170 13 C -0.141 4.141 14 C -0.138 4.138 15 C 0.088 3.912 16 C -0.490 4.490 17 H 0.101 0.899 18 C -0.144 4.144 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.196 1.196 24 C -0.145 4.145 25 C -0.166 4.166 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.749 15.054 6.044 16.650 hybrid contribution -0.933 -0.499 -1.202 1.601 sum -4.682 14.555 4.843 16.038 Atomic orbital electron populations 1.21734 0.94206 1.01954 1.01428 1.21781 0.95241 0.94727 0.97451 1.21590 1.00630 0.94617 1.01647 1.23068 0.97568 0.99247 0.96371 1.22718 0.97584 0.95513 0.97778 1.21268 0.90343 0.96092 0.92026 1.55531 1.52755 1.35613 1.43899 1.01646 0.73736 0.72958 0.73188 1.93538 1.60825 1.86587 1.55451 1.93505 1.80861 1.85668 1.36581 1.29742 1.20869 1.20223 1.01428 1.20089 1.00724 1.00371 0.95803 1.20810 0.99043 0.97646 0.96554 1.21628 0.99765 1.00766 0.91642 1.17687 0.89199 0.90537 0.93796 1.19637 1.38751 0.97737 0.92876 0.89918 1.25938 0.93362 0.95801 0.99252 1.69790 1.33963 1.02795 1.35319 0.86207 0.79243 0.79416 0.81602 1.18240 1.19838 1.19618 1.20756 0.99227 1.01810 0.92741 1.23205 0.97751 0.99198 0.96408 0.92743 0.92796 0.92316 0.92389 0.92529 0.92525 0.89562 0.91305 0.88636 0.90438 0.91281 0.75404 0.87620 0.88412 0.85812 0.90609 0.87074 0.91450 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.76 1.39 -153.69 -0.21 -0.98 16 3 C -0.13 -0.94 9.07 37.16 0.34 -0.60 16 4 C -0.12 -1.08 6.79 -25.92 -0.18 -1.26 16 5 C -0.12 -1.13 3.43 -89.81 -0.31 -1.44 16 6 C 0.13 1.60 6.05 -4.04 -0.02 1.58 16 7 N -1.12 -15.71 6.00 -10.62 -0.06 -15.77 16 8 S 2.69 50.42 5.73 -107.50 -0.62 49.81 16 9 O -0.97 -20.70 17.27 -57.17 -0.99 -21.68 16 10 O -0.98 -20.05 16.73 -57.17 -0.96 -21.00 16 11 C -0.63 -13.72 5.94 -39.66 -0.24 -13.96 16 12 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 13 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 14 C -0.12 -2.93 8.70 -38.88 -0.34 -3.27 16 15 C 0.09 2.35 5.57 -106.82 -0.60 1.76 16 16 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 18 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 19 N -0.79 -19.83 10.97 55.55 0.61 -19.22 16 20 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 C -0.12 -2.98 9.26 -38.87 -0.36 -3.34 16 25 C -0.13 -1.21 6.75 -25.92 -0.17 -1.39 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.06 0.49 7.94 -51.93 -0.41 0.07 16 29 H 0.06 0.42 7.35 -51.93 -0.38 0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 33 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.10 0.88 7.66 -51.93 -0.40 0.48 16 35 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 36 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 37 H 0.41 4.87 8.65 -34.46 -0.30 4.57 16 38 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 39 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 41 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 42 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 43 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 44 H 0.09 0.90 7.74 -51.93 -0.40 0.49 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -30.33 370.94 -11.15 -41.48 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.75 Total: 8.55 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: -2.95 Total: -40.75 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.55 Total: -34.99 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.94 Total: -42.69 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 50.42 SS G_CDS: -0.62 Total: 49.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.33 -11.15 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.600 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds