Wall clock time and date at job start Tue Mar 31 2020 13:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 112.85153 * 2 1 4 4 C 1.53786 * 113.61404 * 131.19054 * 2 1 3 5 5 C 1.53781 * 87.08228 * 139.98386 * 4 2 1 6 6 C 1.53002 * 113.61767 * 219.94016 * 5 4 2 7 7 N 1.46496 * 109.47388 * 183.47061 * 6 5 4 8 8 S 1.65594 * 119.99828 * 164.99817 * 7 6 5 9 9 O 1.42104 * 106.40083 * 178.54057 * 8 7 6 10 10 O 1.42095 * 106.40581 * 311.46040 * 8 7 6 11 11 C 1.76203 * 107.21888 * 64.99934 * 8 7 6 12 12 C 1.38651 * 119.87730 * 269.72296 * 11 8 7 13 13 C 1.38617 * 120.50218 * 179.72003 * 12 11 8 14 14 C 1.37635 * 120.24497 * 0.56038 * 13 12 11 15 15 C 1.40692 * 119.74752 * 359.71983 * 14 13 12 16 16 C 1.41400 * 120.24622 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00219 * 155.25802 * 16 15 14 18 18 C 1.39942 * 119.99637 * 335.25950 * 16 15 14 19 19 N 1.30823 * 120.00286 * 342.23121 * 18 16 15 20 20 Si 1.86799 * 119.99855 * 162.24243 * 18 16 15 21 21 H 1.48506 * 109.47109 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47493 * 119.99604 * 20 18 16 23 23 H 1.48505 * 109.46655 * 239.99542 * 20 18 16 24 24 C 1.37599 * 119.87331 * 90.00228 * 11 8 7 25 25 C 1.53778 * 113.61835 * 228.68759 * 2 1 3 26 26 H 1.08995 * 109.47430 * 288.80725 * 1 2 3 27 27 H 1.09010 * 109.46746 * 48.80712 * 1 2 3 28 28 H 1.08994 * 109.46961 * 168.80265 * 1 2 3 29 29 H 1.08994 * 109.46974 * 191.19546 * 3 2 1 30 30 H 1.08999 * 109.46722 * 311.19288 * 3 2 1 31 31 H 1.08992 * 109.46735 * 71.19158 * 3 2 1 32 32 H 1.09000 * 113.61168 * 25.43856 * 4 2 1 33 33 H 1.08998 * 113.61749 * 254.53608 * 4 2 1 34 34 H 1.08996 * 113.61744 * 89.11830 * 5 4 2 35 35 H 1.08998 * 109.46783 * 303.47105 * 6 5 4 36 36 H 1.08999 * 109.47305 * 63.46686 * 6 5 4 37 37 H 0.97000 * 120.00227 * 344.99723 * 7 6 5 38 38 H 1.08001 * 119.74966 * 0.02562 * 12 11 8 39 39 H 1.07995 * 119.87232 * 180.25731 * 13 12 11 40 40 H 1.08005 * 120.12688 * 179.74696 * 14 13 12 41 41 H 0.97000 * 120.00212 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.13099 * 359.97438 * 24 11 8 43 43 H 1.09011 * 113.61399 * 105.47111 * 25 2 1 44 44 H 1.09000 * 113.61656 * 334.57299 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4100 0.0000 4 6 2.1460 -0.9280 1.0604 5 6 3.1924 -1.3136 0.0015 6 6 3.5476 -2.8018 0.0043 7 7 4.6060 -3.0531 -0.9769 8 16 5.4480 -4.4785 -0.9397 9 8 6.3656 -4.4309 -2.0237 10 8 5.8487 -4.6728 0.4097 11 6 4.3065 -5.7685 -1.3103 12 6 3.6147 -6.3944 -0.2846 13 6 2.7093 -7.4068 -0.5619 14 6 2.4961 -7.8096 -1.8606 15 6 3.1968 -7.1856 -2.9090 16 6 2.9855 -7.5907 -4.2471 17 1 3.1816 -6.9035 -5.0568 18 6 2.5222 -8.8823 -4.5223 19 7 2.6118 -9.8172 -3.6116 20 14 1.7761 -9.2713 -6.1900 21 1 1.7902 -8.0506 -7.0356 22 1 2.5686 -10.3401 -6.8498 23 1 0.3760 -9.7326 -6.0104 24 6 4.1092 -6.1549 -2.6161 25 6 2.1461 -0.9302 -1.0583 26 1 -0.3634 0.3313 0.9727 27 1 -0.3633 0.6769 -0.7734 28 1 -0.3633 -1.0081 -0.1996 29 1 3.1942 1.3533 -0.1995 30 1 1.6415 2.0076 -0.7733 31 1 1.9599 1.8734 0.9727 32 1 1.4945 -1.7522 1.3507 33 1 2.5649 -0.3969 1.9151 34 1 4.0711 -0.6687 0.0008 35 1 3.8956 -3.0903 0.9961 36 1 2.6651 -3.3865 -0.2554 37 1 4.8136 -2.3846 -1.6484 38 1 3.7788 -6.0875 0.7378 39 1 2.1729 -7.8845 0.2446 40 1 1.7932 -8.6014 -2.0741 41 1 2.2911 -10.7125 -3.8025 42 1 4.6522 -5.6689 -3.4132 43 1 2.5651 -0.4008 -1.9141 44 1 1.4946 -1.7549 -1.3472 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619498755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:54 Heat of formation + Delta-G solvation = -76.029747 kcal Electronic energy + Delta-G solvation = -25134.765392 eV Core-core repulsion = 21563.701021 eV Total energy + Delta-G solvation = -3571.064371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72065 -39.44703 -38.25834 -36.90355 -36.05370 -35.66486 -31.91863 -31.64349 -31.57704 -28.23117 -27.36117 -26.84845 -26.48446 -23.67414 -22.81702 -21.83641 -20.58029 -19.62752 -19.08905 -18.40239 -17.73750 -17.41147 -16.85271 -16.55161 -16.20473 -15.82423 -15.31138 -15.18533 -15.06315 -14.92533 -14.56683 -14.31801 -13.87550 -13.69132 -13.56139 -13.30717 -13.21161 -13.17697 -13.07061 -13.04468 -12.84236 -12.74762 -12.63249 -12.59327 -12.24151 -12.19294 -11.78257 -11.55175 -11.39240 -11.37873 -11.15361 -10.88073 -10.79056 -10.38084 -9.84812 -9.56088 -8.73751 -6.45823 -0.47546 0.40817 0.83670 1.36975 1.44184 1.52427 2.14800 2.18733 2.54787 2.80319 3.47189 3.51069 3.61205 3.72388 3.79543 3.87496 4.22878 4.30071 4.44538 4.45315 4.50070 4.58246 4.78956 4.84003 4.84794 4.87440 4.90138 4.96739 4.99555 5.05832 5.07486 5.09162 5.12797 5.20714 5.25218 5.33562 5.37662 5.41161 5.56463 5.60071 5.73175 5.88375 5.93519 6.09855 6.16210 6.52292 6.79417 6.84333 8.24747 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.003491 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.586146 B = 8018.867973 C = 9053.076336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.121 3.879 7 N -1.102 6.102 8 S 2.719 3.281 9 O -0.999 6.999 10 O -0.988 6.988 11 C -0.637 4.637 12 C -0.147 4.147 13 C -0.122 4.122 14 C -0.140 4.140 15 C 0.062 3.938 16 C -0.498 4.498 17 H 0.080 0.920 18 C 0.036 3.964 19 N -0.825 5.825 20 Si 0.985 3.015 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.261 1.261 24 C -0.146 4.146 25 C -0.133 4.133 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.426 0.574 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.292 0.708 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 16.956 6.338 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C -0.184 4.184 4 C -0.161 4.161 5 C -0.132 4.132 6 C -0.005 4.005 7 N -0.864 5.864 8 S 2.812 3.188 9 O -0.989 6.989 10 O -0.978 6.978 11 C -0.726 4.726 12 C -0.168 4.168 13 C -0.142 4.142 14 C -0.160 4.160 15 C 0.059 3.941 16 C -0.527 4.527 17 H 0.098 0.902 18 C -0.180 4.180 19 N -0.451 5.451 20 Si 0.805 3.195 21 H -0.181 1.181 22 H -0.192 1.192 23 H -0.185 1.185 24 C -0.167 4.167 25 C -0.171 4.171 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.262 0.738 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.089 0.911 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.274 16.479 6.710 18.299 hybrid contribution -0.747 -0.855 -1.280 1.711 sum -5.021 15.624 5.430 17.286 Atomic orbital electron populations 1.21734 0.93994 1.01632 1.01997 1.21777 0.95449 0.95070 0.96475 1.21595 1.00650 0.93893 1.02265 1.23087 0.97051 0.99361 0.96557 1.22731 0.98263 0.93593 0.98611 1.21516 0.89415 0.98127 0.91425 1.55145 1.52834 1.33784 1.44686 1.00761 0.72911 0.72927 0.72230 1.93499 1.61926 1.87052 1.56406 1.93487 1.81029 1.86222 1.37051 1.30250 1.20664 1.21108 1.00565 1.20476 0.99763 0.99534 0.97009 1.21148 0.99054 0.97562 0.96390 1.21636 1.00407 1.01268 0.92712 1.18044 0.90028 0.91522 0.94475 1.19892 1.40965 0.98839 0.93053 0.90217 1.26781 0.93015 0.95029 1.03146 1.69828 1.34475 1.03413 1.37338 0.85117 0.78608 0.79120 0.76648 1.18082 1.19179 1.18515 1.20833 0.99697 1.02216 0.93914 1.23225 0.97707 0.99299 0.96858 0.91985 0.92461 0.93084 0.92242 0.92200 0.91744 0.89734 0.90223 0.87513 0.90206 0.91716 0.73789 0.84990 0.85508 0.86966 0.89760 0.87294 0.91111 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 2 C -0.09 -1.28 1.39 -51.65 -0.07 -1.35 16 3 C -0.13 -1.56 9.07 71.98 0.65 -0.90 16 4 C -0.12 -1.86 6.79 31.12 0.21 -1.65 16 5 C -0.11 -1.95 3.43 -10.27 -0.04 -1.99 16 6 C 0.12 2.79 6.05 86.38 0.52 3.31 16 7 N -1.10 -29.23 6.00 -187.50 -1.12 -30.35 16 8 S 2.72 99.34 5.73 -56.49 -0.32 99.01 16 9 O -1.00 -42.03 17.27 -128.00 -2.21 -44.24 16 10 O -0.99 -38.89 16.73 -128.00 -2.14 -41.03 16 11 C -0.64 -27.62 5.94 22.22 0.13 -27.49 16 12 C -0.15 -6.19 9.53 22.46 0.21 -5.97 16 13 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 14 C -0.14 -7.13 8.70 22.73 0.20 -6.93 16 15 C 0.06 3.33 5.57 -21.29 -0.12 3.21 16 16 C -0.50 -26.50 9.05 23.46 0.21 -26.28 16 17 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 18 C 0.04 1.75 5.14 85.26 0.44 2.19 16 19 N -0.82 -42.10 10.97 21.83 0.24 -41.86 16 20 Si 0.98 37.26 29.59 68.60 2.03 39.29 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 24 C -0.15 -7.18 9.26 22.73 0.21 -6.97 16 25 C -0.13 -2.32 6.75 31.12 0.21 -2.11 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.05 0.79 7.94 -2.39 -0.02 0.78 16 29 H 0.06 0.71 7.35 -2.39 -0.02 0.70 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 1.32 8.06 -2.39 -0.02 1.30 16 33 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 34 H 0.11 1.66 7.66 -2.39 -0.02 1.64 16 35 H 0.08 1.84 7.75 -2.39 -0.02 1.82 16 36 H 0.06 1.57 7.88 -2.39 -0.02 1.55 16 37 H 0.43 9.31 8.65 -96.75 -0.84 8.48 16 38 H 0.13 4.81 7.59 -2.91 -0.02 4.79 16 39 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 41 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 42 H 0.11 5.25 7.60 -2.91 -0.02 5.22 16 43 H 0.07 1.17 8.10 -2.38 -0.02 1.15 16 44 H 0.08 1.50 7.74 -2.39 -0.02 1.48 16 Total: -1.00 -65.42 370.94 0.29 -65.14 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.16 Total: 33.45 kcal Atomic # 6 Polarization: -83.06 SS G_CDS: 3.66 Total: -79.40 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -0.88 Total: -72.21 kcal Atomic # 8 Polarization: -80.92 SS G_CDS: -4.35 Total: -85.27 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: 99.34 SS G_CDS: -0.32 Total: 99.01 kcal Total: -65.42 0.29 -65.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.895 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds