Wall clock time and date at job start Tue Mar 31 2020 14:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99837 * 2 1 4 4 C 1.52999 * 109.46706 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47270 * 64.99985 * 4 3 2 6 6 C 1.46499 * 120.00121 * 269.99812 * 5 4 3 7 7 C 1.50703 * 109.47262 * 265.16867 * 6 5 4 8 8 H 1.08004 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00263 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99519 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 119.99919 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47005 * 90.00285 * 11 9 7 13 13 H 1.48504 * 109.47205 * 209.99918 * 11 9 7 14 14 H 1.48501 * 109.47728 * 329.99971 * 11 9 7 15 15 C 1.34783 * 120.00181 * 89.99565 * 5 4 3 16 16 O 1.21357 * 119.99777 * 5.03439 * 15 5 4 17 17 C 1.49291 * 119.99822 * 185.03019 * 15 5 4 18 18 O 1.21358 * 119.99994 * 274.27549 * 17 15 5 19 19 C 1.47400 * 119.99684 * 94.28115 * 17 15 5 20 20 C 1.39900 * 120.16365 * 354.06830 * 19 17 15 21 21 C 1.38061 * 119.79847 * 180.02562 * 20 19 17 22 22 F 1.35095 * 119.93958 * 180.02562 * 21 20 19 23 23 C 1.38684 * 120.12031 * 359.97438 * 21 20 19 24 24 C 1.38391 * 120.33134 * 0.27852 * 23 21 20 25 25 C 1.37888 * 120.19636 * 359.44419 * 24 23 21 26 26 C 1.50699 * 120.06244 * 180.25308 * 25 24 23 27 27 H 1.09003 * 109.47388 * 300.00535 * 1 2 3 28 28 H 1.09000 * 109.46966 * 60.00218 * 1 2 3 29 29 H 1.09004 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47177 * 59.99576 * 3 2 1 31 31 H 1.08997 * 109.46885 * 299.99740 * 3 2 1 32 32 H 1.09000 * 109.47428 * 304.99546 * 4 3 2 33 33 H 1.09003 * 109.47065 * 184.99889 * 4 3 2 34 34 H 1.09008 * 109.46839 * 25.16508 * 6 5 4 35 35 H 1.08995 * 109.47668 * 145.16449 * 6 5 4 36 36 H 0.97008 * 119.99530 * 180.02562 * 10 9 7 37 37 H 1.07994 * 120.09962 * 0.04753 * 20 19 17 38 38 H 1.08000 * 119.83628 * 179.97438 * 23 21 20 39 39 H 1.07998 * 119.90414 * 179.71977 * 24 23 21 40 40 H 1.09001 * 109.47327 * 263.31202 * 26 25 24 41 41 H 1.09003 * 109.47141 * 23.31208 * 26 25 24 42 42 H 1.09000 * 109.47224 * 143.30916 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1063 -0.8926 -1.3402 7 6 5.5325 -1.2884 -1.0564 8 1 6.2688 -0.5307 -0.8323 9 6 5.8973 -2.6178 -1.0829 10 7 5.0008 -3.5403 -1.3562 11 14 7.6651 -3.1082 -0.7318 12 1 7.8325 -3.3480 0.7241 13 1 7.9921 -4.3495 -1.4787 14 1 8.5763 -2.0173 -1.1618 15 6 4.2634 1.3328 -2.3200 16 8 4.2446 2.5422 -2.2202 17 6 4.6041 0.6968 -3.6270 18 8 5.7471 0.3612 -3.8588 19 6 3.5522 0.4766 -4.6358 20 6 2.2147 0.7470 -4.3274 21 6 1.2355 0.5376 -5.2778 22 9 -0.0569 0.7982 -4.9832 23 6 1.5764 0.0611 -6.5349 24 6 2.8972 -0.2130 -6.8439 25 6 3.8866 -0.0033 -5.9066 26 6 5.3246 -0.2975 -6.2482 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 3.4469 -1.3615 -0.6098 35 1 3.8306 -1.2211 -2.3422 36 1 5.2574 -4.4757 -1.3745 37 1 1.9490 1.1188 -3.3488 38 1 0.8066 -0.1015 -7.2748 39 1 3.1543 -0.5881 -7.8234 40 1 5.5887 -1.2905 -5.8846 41 1 5.4562 -0.2596 -7.3296 42 1 5.9691 0.4451 -5.7776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000679794034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:12 Heat of formation + Delta-G solvation = -126.889114 kcal Electronic energy + Delta-G solvation = -28516.651090 eV Core-core repulsion = 24377.168116 eV Total energy + Delta-G solvation = -4139.482975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.86460 -40.45895 -38.88435 -37.77755 -37.23210 -35.11083 -32.63701 -32.32597 -31.62822 -30.04420 -27.28883 -26.99093 -26.10768 -25.00079 -23.54105 -22.92826 -21.89799 -21.05394 -18.78770 -17.44785 -17.01018 -16.48873 -16.46566 -16.05318 -15.79665 -15.69032 -15.56166 -15.28815 -15.03847 -14.57208 -14.47978 -14.12575 -13.90642 -13.71515 -13.37103 -13.14768 -12.76161 -12.39486 -12.16540 -12.02465 -11.85327 -11.80278 -11.63856 -11.61386 -11.48388 -11.43981 -10.99941 -10.90008 -10.68409 -10.52906 -10.10057 -9.74234 -9.45795 -9.13460 -8.77054 -8.53702 -8.48137 -7.92041 -6.12107 -4.18365 0.60091 1.15951 2.40975 2.89768 3.28297 3.34676 3.36769 3.43343 3.66513 4.06597 4.16335 4.37361 4.50606 4.63692 4.84564 4.89306 5.15661 5.22567 5.29780 5.30960 5.42050 5.54358 5.56744 5.59593 5.62627 5.77009 5.82286 5.88443 5.93486 5.94312 5.96298 6.07390 6.24338 6.30520 6.55680 6.63770 6.80383 7.15136 7.38945 7.43814 7.62619 7.82418 8.06443 8.07867 8.51402 8.88546 9.48270 10.95151 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009166 B = 0.006196 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.880583 B = 4518.052605 C = 6100.914635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.116 3.884 5 N -0.568 5.568 6 C 0.238 3.762 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.493 3.507 16 O -0.553 6.553 17 C 0.402 3.598 18 O -0.390 6.390 19 C -0.125 4.125 20 C -0.092 4.092 21 C 0.079 3.921 22 F -0.139 7.139 23 C -0.120 4.120 24 C -0.108 4.108 25 C -0.027 4.027 26 C -0.125 4.125 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.264 0.736 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 6.457 -6.660 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.031 4.031 4 C -0.007 4.007 5 N -0.299 5.299 6 C 0.119 3.881 7 C -0.575 4.575 8 H 0.080 0.920 9 C -0.135 4.135 10 N -0.528 5.528 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.278 3.722 16 O -0.434 6.434 17 C 0.272 3.728 18 O -0.259 6.259 19 C -0.127 4.127 20 C -0.111 4.111 21 C 0.059 3.941 22 F -0.118 7.118 23 C -0.139 4.139 24 C -0.126 4.126 25 C -0.028 4.028 26 C -0.181 4.181 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.229 6.500 -6.722 12.456 hybrid contribution 0.243 -0.246 0.384 0.517 sum -7.986 6.254 -6.339 11.961 Atomic orbital electron populations 1.22705 0.81911 1.02575 0.99292 1.88065 1.18864 1.27184 1.95227 1.23021 0.94867 0.85172 1.00039 1.21488 0.91312 1.00118 0.87781 1.48298 1.61513 1.10410 1.09675 1.19599 0.97925 0.71843 0.98777 1.21454 0.94324 0.92590 1.49089 0.92022 1.24888 0.97709 0.96229 0.94719 1.69940 1.33669 1.00941 1.48207 0.86509 0.84722 0.78117 0.78267 1.20553 1.21076 1.19628 1.20570 0.77963 0.87350 0.86304 1.90697 1.54307 1.13428 1.84950 1.22051 0.88419 0.75172 0.87126 1.90582 1.21927 1.35853 1.77556 1.20017 0.93437 1.03961 0.95295 1.21333 0.91604 0.98590 0.99578 1.17420 0.78464 1.03536 0.94640 1.91496 1.34398 1.92040 1.93854 1.21337 0.97830 0.99431 0.95288 1.20877 0.91213 1.00592 0.99910 1.20273 0.97383 0.93526 0.91613 1.21136 0.91390 1.04475 1.01107 0.94592 0.94516 0.89748 0.92679 0.93471 0.88795 0.88901 0.92393 0.95250 0.92620 0.84347 0.84343 0.84275 0.89560 0.91931 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.37 9.62 -35.23 -0.34 -6.70 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.07 5.83 -4.05 -0.02 2.04 16 5 N -0.57 -12.12 2.43 -175.63 -0.43 -12.54 16 6 C 0.24 5.84 4.75 -5.19 -0.02 5.81 16 7 C -0.54 -14.54 9.35 -34.44 -0.32 -14.86 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 11 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.49 10.64 6.06 -11.66 -0.07 10.57 16 16 O -0.55 -12.31 16.65 5.49 0.09 -12.22 16 17 C 0.40 8.39 5.05 -31.26 -0.16 8.24 16 18 O -0.39 -8.75 14.10 5.49 0.08 -8.67 16 19 C -0.13 -2.23 5.87 -104.92 -0.62 -2.84 16 20 C -0.09 -1.51 9.44 -39.02 -0.37 -1.88 16 21 C 0.08 1.13 7.29 -39.48 -0.29 0.84 16 22 F -0.14 -1.97 17.26 2.25 0.04 -1.93 16 23 C -0.12 -1.43 10.02 -39.36 -0.39 -1.83 16 24 C -0.11 -1.30 9.66 -39.65 -0.38 -1.68 16 25 C -0.03 -0.42 5.92 -104.13 -0.62 -1.03 16 26 C -0.13 -1.80 8.72 36.01 0.31 -1.49 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.67 8.07 -51.93 -0.42 1.25 16 33 H 0.09 1.56 7.36 -51.93 -0.38 1.18 16 34 H 0.06 1.50 7.22 -51.92 -0.37 1.13 16 35 H 0.03 0.77 6.97 -51.93 -0.36 0.41 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.14 2.31 7.16 -52.49 -0.38 1.94 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.22 8.05 -52.49 -0.42 0.79 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 42 H 0.09 1.48 5.89 -51.93 -0.31 1.17 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -31.43 366.71 -6.58 -38.01 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.56 Total: 0.44 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.70 Total: 6.12 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.31 Total: -37.01 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.17 Total: -27.59 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.43 -6.58 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000679794034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.876 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds