Wall clock time and date at job start Tue Mar 31 2020 14:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99837 * 2 1 4 4 C 1.52999 * 109.46706 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47270 * 64.99985 * 4 3 2 6 6 C 1.46499 * 120.00121 * 269.99812 * 5 4 3 7 7 C 1.50703 * 109.47262 * 265.16867 * 6 5 4 8 8 H 1.08004 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00263 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99519 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 119.99919 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47005 * 90.00285 * 11 9 7 13 13 H 1.48504 * 109.47205 * 209.99918 * 11 9 7 14 14 H 1.48501 * 109.47728 * 329.99971 * 11 9 7 15 15 C 1.34783 * 120.00181 * 89.99565 * 5 4 3 16 16 O 1.21357 * 119.99777 * 5.03439 * 15 5 4 17 17 C 1.49291 * 119.99822 * 185.03019 * 15 5 4 18 18 O 1.21358 * 119.99994 * 274.27549 * 17 15 5 19 19 C 1.47400 * 119.99684 * 94.28115 * 17 15 5 20 20 C 1.39900 * 120.16365 * 354.06830 * 19 17 15 21 21 C 1.38061 * 119.79847 * 180.02562 * 20 19 17 22 22 F 1.35095 * 119.93958 * 180.02562 * 21 20 19 23 23 C 1.38684 * 120.12031 * 359.97438 * 21 20 19 24 24 C 1.38391 * 120.33134 * 0.27852 * 23 21 20 25 25 C 1.37888 * 120.19636 * 359.44419 * 24 23 21 26 26 C 1.50699 * 120.06244 * 180.25308 * 25 24 23 27 27 H 1.09003 * 109.47388 * 300.00535 * 1 2 3 28 28 H 1.09000 * 109.46966 * 60.00218 * 1 2 3 29 29 H 1.09004 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47177 * 59.99576 * 3 2 1 31 31 H 1.08997 * 109.46885 * 299.99740 * 3 2 1 32 32 H 1.09000 * 109.47428 * 304.99546 * 4 3 2 33 33 H 1.09003 * 109.47065 * 184.99889 * 4 3 2 34 34 H 1.09008 * 109.46839 * 25.16508 * 6 5 4 35 35 H 1.08995 * 109.47668 * 145.16449 * 6 5 4 36 36 H 0.97008 * 119.99530 * 180.02562 * 10 9 7 37 37 H 1.07994 * 120.09962 * 0.04753 * 20 19 17 38 38 H 1.08000 * 119.83628 * 179.97438 * 23 21 20 39 39 H 1.07998 * 119.90414 * 179.71977 * 24 23 21 40 40 H 1.09001 * 109.47327 * 263.31202 * 26 25 24 41 41 H 1.09003 * 109.47141 * 23.31208 * 26 25 24 42 42 H 1.09000 * 109.47224 * 143.30916 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1063 -0.8926 -1.3402 7 6 5.5325 -1.2884 -1.0564 8 1 6.2688 -0.5307 -0.8323 9 6 5.8973 -2.6178 -1.0829 10 7 5.0008 -3.5403 -1.3562 11 14 7.6651 -3.1082 -0.7318 12 1 7.8325 -3.3480 0.7241 13 1 7.9921 -4.3495 -1.4787 14 1 8.5763 -2.0173 -1.1618 15 6 4.2634 1.3328 -2.3200 16 8 4.2446 2.5422 -2.2202 17 6 4.6041 0.6968 -3.6270 18 8 5.7471 0.3612 -3.8588 19 6 3.5522 0.4766 -4.6358 20 6 2.2147 0.7470 -4.3274 21 6 1.2355 0.5376 -5.2778 22 9 -0.0569 0.7982 -4.9832 23 6 1.5764 0.0611 -6.5349 24 6 2.8972 -0.2130 -6.8439 25 6 3.8866 -0.0033 -5.9066 26 6 5.3246 -0.2975 -6.2482 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 3.4469 -1.3615 -0.6098 35 1 3.8306 -1.2211 -2.3422 36 1 5.2574 -4.4757 -1.3745 37 1 1.9490 1.1188 -3.3488 38 1 0.8066 -0.1015 -7.2748 39 1 3.1543 -0.5881 -7.8234 40 1 5.5887 -1.2905 -5.8846 41 1 5.4562 -0.2596 -7.3296 42 1 5.9691 0.4451 -5.7776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000679794034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:12 Heat of formation + Delta-G solvation = -145.624242 kcal Electronic energy + Delta-G solvation = -28517.463507 eV Core-core repulsion = 24377.168116 eV Total energy + Delta-G solvation = -4140.295391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.98090 -41.99018 -40.29816 -39.13783 -38.64677 -36.86609 -34.67451 -33.47329 -32.83386 -31.53220 -29.13873 -28.29657 -27.27979 -26.36215 -25.06878 -24.63478 -23.18881 -22.32763 -20.28887 -18.95304 -18.71691 -18.25458 -17.94377 -17.37149 -17.13880 -16.80940 -16.77420 -16.68441 -16.47249 -16.31453 -15.86567 -15.56824 -15.26675 -14.96889 -14.72227 -14.49223 -14.29263 -14.11145 -13.73370 -13.53864 -13.24462 -13.14489 -12.92315 -12.85156 -12.82049 -12.78468 -12.65845 -12.57661 -12.31996 -12.03186 -11.98584 -11.76704 -10.65866 -10.65426 -10.32158 -10.26535 -9.71178 -9.67507 -8.23787 -6.37614 -0.67133 0.03382 0.97814 1.20782 1.37177 1.38942 1.49922 1.84916 2.37864 2.45238 2.84231 2.88841 3.07461 3.11259 3.46400 3.71397 3.79775 3.96885 4.06698 4.10633 4.16559 4.34553 4.46838 4.49797 4.52322 4.56598 4.63808 4.76254 4.77835 4.82828 4.84537 4.86760 4.87372 5.01749 5.13257 5.19350 5.41697 5.48820 5.70361 5.72227 5.97876 6.07400 6.18087 6.31783 6.67487 6.85865 7.32721 8.82749 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009166 B = 0.006196 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.880583 B = 4518.052605 C = 6100.914635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.055 3.945 4 C 0.107 3.893 5 N -0.570 5.570 6 C 0.263 3.737 7 C -0.549 4.549 8 H 0.047 0.953 9 C 0.024 3.976 10 N -0.915 5.915 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.277 1.277 15 C 0.488 3.512 16 O -0.566 6.566 17 C 0.395 3.605 18 O -0.421 6.421 19 C -0.157 4.157 20 C -0.107 4.107 21 C 0.072 3.928 22 F -0.139 7.139 23 C -0.097 4.097 24 C -0.093 4.093 25 C -0.036 4.036 26 C -0.122 4.122 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.009 0.991 36 H 0.268 0.732 37 H 0.123 0.877 38 H 0.182 0.818 39 H 0.186 0.814 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 6.135 -8.370 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.300 5.300 6 C 0.143 3.857 7 C -0.587 4.587 8 H 0.066 0.934 9 C -0.176 4.176 10 N -0.554 5.554 11 Si 0.780 3.220 12 H -0.193 1.193 13 H -0.201 1.201 14 H -0.202 1.202 15 C 0.273 3.727 16 O -0.448 6.448 17 C 0.268 3.732 18 O -0.293 6.293 19 C -0.159 4.159 20 C -0.126 4.126 21 C 0.053 3.947 22 F -0.117 7.117 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.036 4.036 26 C -0.178 4.178 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.141 0.859 38 H 0.200 0.800 39 H 0.203 0.797 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.372 6.194 -8.409 14.032 hybrid contribution 0.489 -0.117 0.877 1.011 sum -8.883 6.077 -7.532 13.136 Atomic orbital electron populations 1.22883 0.79822 1.03398 1.00746 1.88010 1.21270 1.28090 1.95519 1.22945 0.92772 0.85029 1.01515 1.21750 0.93551 1.00054 0.86103 1.48255 1.61599 1.09244 1.10936 1.19062 0.96247 0.73577 0.96854 1.21610 0.95163 0.92648 1.49326 0.93435 1.25609 1.01426 0.96171 0.94424 1.70023 1.35333 1.01297 1.48708 0.85603 0.80013 0.77688 0.78714 1.19284 1.20093 1.20242 1.20880 0.77617 0.87324 0.86858 1.90660 1.55086 1.13753 1.85289 1.22395 0.88975 0.74353 0.87432 1.90559 1.23040 1.37599 1.78109 1.19892 0.92900 1.07156 0.95926 1.21257 0.91886 0.99665 0.99807 1.17566 0.78006 1.03844 0.95295 1.91498 1.34158 1.92089 1.93994 1.21838 0.98884 0.96277 0.94566 1.21363 0.90230 0.98632 1.00768 1.20555 0.98641 0.93224 0.91201 1.21091 0.90689 1.02536 1.03503 0.92116 0.93979 0.89345 0.89090 0.93841 0.89144 0.88065 0.93988 0.97293 0.92251 0.85910 0.80022 0.79670 0.91339 0.87709 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -14.02 9.62 -148.98 -1.43 -15.46 16 3 C 0.05 1.67 6.28 71.98 0.45 2.13 16 4 C 0.11 3.93 5.83 86.38 0.50 4.44 16 5 N -0.57 -25.49 2.43 -827.93 -2.01 -27.50 16 6 C 0.26 13.56 4.75 85.63 0.41 13.96 16 7 C -0.55 -30.87 9.35 25.60 0.24 -30.63 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.02 1.37 5.46 84.66 0.46 1.83 16 10 N -0.91 -52.68 13.29 21.45 0.28 -52.40 16 11 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 C 0.49 22.14 6.06 87.22 0.53 22.67 16 16 O -0.57 -26.25 16.65 -3.27 -0.05 -26.31 16 17 C 0.40 17.45 5.05 27.66 0.14 17.58 16 18 O -0.42 -20.06 14.10 -3.27 -0.05 -20.11 16 19 C -0.16 -5.73 5.87 -20.06 -0.12 -5.85 16 20 C -0.11 -3.58 9.44 22.63 0.21 -3.36 16 21 C 0.07 1.95 7.29 22.33 0.16 2.11 16 22 F -0.14 -3.71 17.26 44.97 0.78 -2.93 16 23 C -0.10 -1.93 10.02 22.41 0.22 -1.71 16 24 C -0.09 -1.86 9.66 22.22 0.21 -1.65 16 25 C -0.04 -1.05 5.92 -19.55 -0.12 -1.16 16 26 C -0.12 -3.45 8.72 71.24 0.62 -2.82 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 3.33 8.07 -2.39 -0.02 3.31 16 33 H 0.10 3.49 7.36 -2.39 -0.02 3.47 16 34 H 0.04 2.29 7.22 -2.38 -0.02 2.27 16 35 H 0.01 0.51 6.97 -2.39 -0.02 0.49 16 36 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.12 4.36 7.16 -2.91 -0.02 4.34 16 38 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.19 2.07 8.05 -2.91 -0.02 2.05 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.10 1.98 8.04 -2.39 -0.02 1.96 16 42 H 0.07 2.27 5.89 -2.39 -0.01 2.26 16 Total: -1.00 -71.22 366.71 5.76 -65.45 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.04 Total: 13.25 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 5.18 Total: 19.47 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.73 Total: -79.90 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -1.53 Total: -61.87 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -71.22 5.76 -65.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000679794034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.172 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds