Wall clock time and date at job start Tue Mar 31 2020 13:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 112.85062 * 2 1 4 4 C 1.53783 * 113.61711 * 131.19327 * 2 1 3 5 5 C 1.53779 * 87.08347 * 139.98220 * 4 2 1 6 6 C 1.52995 * 113.61448 * 219.93961 * 5 4 2 7 7 N 1.46500 * 109.47209 * 183.46946 * 6 5 4 8 8 S 1.65605 * 119.99850 * 164.99617 * 7 6 5 9 9 O 1.42104 * 106.39752 * 178.54090 * 8 7 6 10 10 O 1.42094 * 106.40518 * 311.46224 * 8 7 6 11 11 C 1.76197 * 107.21713 * 65.00365 * 8 7 6 12 12 C 1.38634 * 119.74665 * 269.72587 * 11 8 7 13 13 C 1.37622 * 120.24543 * 179.72445 * 12 11 8 14 14 C 1.40717 * 119.74752 * 0.56573 * 13 12 11 15 15 C 1.41394 * 120.24382 * 179.68530 * 14 13 12 16 16 H 1.08002 * 119.99624 * 204.41064 * 15 14 13 17 17 C 1.39938 * 120.00380 * 24.40542 * 15 14 13 18 18 N 1.30827 * 119.99970 * 17.84976 * 17 15 14 19 19 Si 1.86797 * 120.00248 * 197.84440 * 17 15 14 20 20 H 1.48498 * 109.47023 * 60.00226 * 19 17 15 21 21 H 1.48499 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47184 * 300.00575 * 19 17 15 23 23 C 1.40717 * 119.50910 * 359.70758 * 14 13 12 24 24 C 1.37624 * 119.74287 * 359.97438 * 23 14 13 25 25 C 1.53783 * 87.17315 * 334.52585 * 5 4 2 26 26 H 1.09007 * 109.46900 * 288.80802 * 1 2 3 27 27 H 1.09003 * 109.47184 * 48.80184 * 1 2 3 28 28 H 1.08999 * 109.47279 * 168.81003 * 1 2 3 29 29 H 1.08997 * 109.46737 * 191.19865 * 3 2 1 30 30 H 1.08999 * 109.46689 * 311.19456 * 3 2 1 31 31 H 1.08999 * 109.47262 * 71.19251 * 3 2 1 32 32 H 1.08998 * 113.61130 * 25.42909 * 4 2 1 33 33 H 1.09000 * 113.61585 * 254.53411 * 4 2 1 34 34 H 1.09000 * 113.61512 * 89.11796 * 5 4 2 35 35 H 1.09006 * 109.47216 * 303.47103 * 6 5 4 36 36 H 1.09001 * 109.47705 * 63.46564 * 6 5 4 37 37 H 0.96998 * 119.99992 * 345.00199 * 7 6 5 38 38 H 1.08004 * 119.87798 * 359.97438 * 12 11 8 39 39 H 1.08009 * 120.12544 * 180.27958 * 13 12 11 40 40 H 0.96998 * 120.00201 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.12685 * 179.97438 * 23 14 13 42 42 H 1.08002 * 119.87274 * 180.02562 * 24 23 14 43 43 H 1.08998 * 113.61337 * 140.02007 * 25 5 4 44 44 H 1.08995 * 113.61527 * 270.92749 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 3.1924 -1.3136 0.0014 6 6 3.5476 -2.8017 0.0042 7 7 4.6059 -3.0530 -0.9771 8 16 5.4481 -4.4785 -0.9399 9 8 6.3656 -4.4308 -2.0240 10 8 5.8488 -4.6727 0.4095 11 6 4.3065 -5.7685 -1.3105 12 6 3.6162 -6.3924 -0.2828 13 6 2.7180 -7.3972 -0.5611 14 6 2.5104 -7.7989 -1.8937 15 6 1.5950 -8.8347 -2.1909 16 1 1.7051 -9.4083 -3.0994 17 6 0.5466 -9.1167 -1.3080 18 7 0.1938 -8.2347 -0.4084 19 14 -0.3494 -10.7523 -1.4140 20 1 0.6144 -11.8600 -1.1918 21 1 -1.4108 -10.8035 -0.3767 22 1 -0.9645 -10.8937 -2.7582 23 6 3.2209 -7.1624 -2.9281 24 6 4.1093 -6.1553 -2.6271 25 6 2.1472 -0.9318 -1.0602 26 1 -0.3633 0.3313 0.9729 27 1 -0.3634 0.6769 -0.7733 28 1 -0.3634 -1.0081 -0.1994 29 1 3.1942 1.3533 -0.1996 30 1 1.6415 2.0076 -0.7733 31 1 1.9599 1.8735 0.9728 32 1 1.4945 -1.7521 1.3508 33 1 2.5650 -0.3969 1.9150 34 1 4.0711 -0.6686 0.0007 35 1 3.8957 -3.0903 0.9960 36 1 2.6651 -3.3865 -0.2554 37 1 4.8135 -2.3845 -1.6485 38 1 3.7809 -6.0860 0.7396 39 1 2.1779 -7.8789 0.2407 40 1 -0.5332 -8.4300 0.2033 41 1 3.0696 -7.4629 -3.9544 42 1 4.6555 -5.6651 -3.4194 43 1 2.5672 -0.4037 -1.9162 44 1 1.4961 -1.7570 -1.3484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701444616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:58 Heat of formation + Delta-G solvation = -63.947578 kcal Electronic energy + Delta-G solvation = -25179.263438 eV Core-core repulsion = 21608.722990 eV Total energy + Delta-G solvation = -3570.540449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.88309 -37.56809 -36.46115 -35.10088 -34.79171 -34.03559 -30.73618 -30.25225 -29.45985 -27.57757 -25.88116 -25.80490 -25.58279 -21.54414 -21.14254 -20.84161 -18.83634 -18.29961 -17.61363 -17.03174 -16.56064 -16.00168 -15.51219 -15.10412 -14.58671 -14.37175 -14.14587 -13.97242 -13.70017 -13.37612 -13.19984 -12.88747 -12.77248 -12.41264 -12.18801 -12.15049 -11.93302 -11.79645 -11.65462 -11.45231 -11.42411 -11.34710 -11.26281 -11.21861 -10.90058 -10.87132 -10.58276 -10.42777 -10.11985 -9.97004 -9.74673 -9.60561 -9.49991 -8.96764 -7.95663 -7.69844 -7.14705 -4.80230 1.30760 2.26370 2.87626 2.89075 2.92370 2.94899 3.65955 3.77057 4.23633 4.38412 4.51170 4.56292 4.61134 4.73851 5.05474 5.17672 5.33431 5.37645 5.41265 5.48378 5.51022 5.66051 5.72059 5.78039 5.79211 5.83720 5.86431 5.99122 6.03181 6.07772 6.12573 6.13463 6.27446 6.37598 6.53564 6.68039 6.71152 6.92021 7.05436 7.33206 7.38440 7.43610 7.64067 7.77065 7.97114 8.31827 8.51393 8.65298 9.76716 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.003827 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.220200 B = 7313.882954 C = 9072.096622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.130 3.870 7 N -1.125 6.125 8 S 2.694 3.306 9 O -0.988 6.988 10 O -0.986 6.986 11 C -0.786 4.786 12 C -0.017 4.017 13 C -0.183 4.183 14 C 0.140 3.860 15 C -0.437 4.437 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.766 5.766 19 Si 0.917 3.083 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.240 4.240 24 C 0.003 3.997 25 C -0.128 4.128 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.289 0.711 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 12.722 1.889 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C -0.184 4.184 4 C -0.163 4.163 5 C -0.135 4.135 6 C 0.004 3.996 7 N -0.881 5.881 8 S 2.793 3.207 9 O -0.979 6.979 10 O -0.976 6.976 11 C -0.882 4.882 12 C -0.037 4.037 13 C -0.203 4.203 14 C 0.136 3.864 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.149 4.149 18 N -0.389 5.389 19 Si 0.740 3.260 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.260 4.260 24 C -0.017 4.017 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.207 12.601 2.438 12.891 hybrid contribution -1.166 -0.699 -0.508 1.452 sum -2.373 11.901 1.929 12.288 Atomic orbital electron populations 1.21736 0.94222 1.02008 1.01371 1.21831 0.95220 0.94660 0.97503 1.21586 1.00585 0.94659 1.01594 1.23064 0.97637 0.99262 0.96319 1.22709 0.97453 0.95681 0.97682 1.21221 0.90504 0.95836 0.92026 1.55666 1.52666 1.36028 1.43743 1.01179 0.73818 0.72854 0.72890 1.93485 1.61635 1.87023 1.55767 1.93477 1.81389 1.85852 1.36873 1.29167 1.31015 1.27040 1.01004 1.20267 0.93031 0.94790 0.95638 1.21336 1.00894 1.01091 0.96989 1.17841 0.88389 0.88651 0.91486 1.19911 1.07583 1.13311 1.05588 0.89505 1.26118 0.96954 0.98317 0.93505 1.69806 1.22408 1.33054 1.13619 0.86201 0.79041 0.81337 0.79408 1.18355 1.19895 1.18579 1.21049 1.05049 1.02192 0.97738 1.20161 0.93596 0.94799 0.93191 1.23242 0.97801 0.99163 0.96300 0.92758 0.92863 0.92239 0.92430 0.92585 0.92549 0.89492 0.91378 0.88793 0.90649 0.91277 0.75898 0.87921 0.85991 0.89965 0.88245 0.87827 0.91582 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.86 1.39 -153.55 -0.21 -1.08 16 3 C -0.13 -1.03 9.08 37.16 0.34 -0.70 16 4 C -0.12 -1.25 6.79 -25.92 -0.18 -1.42 16 5 C -0.12 -1.27 3.42 -89.81 -0.31 -1.57 16 6 C 0.13 1.81 6.05 -4.04 -0.02 1.78 16 7 N -1.12 -16.83 6.00 -10.61 -0.06 -16.90 16 8 S 2.69 51.99 5.73 -107.50 -0.62 51.38 16 9 O -0.99 -20.99 17.26 -57.17 -0.99 -21.98 16 10 O -0.99 -21.19 16.72 -57.17 -0.96 -22.15 16 11 C -0.79 -17.27 5.97 -39.29 -0.23 -17.51 16 12 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 13 C -0.18 -4.54 8.70 -38.87 -0.34 -4.88 16 14 C 0.14 3.53 5.58 -106.82 -0.60 2.94 16 15 C -0.44 -10.68 9.05 -37.75 -0.34 -11.02 16 16 H 0.09 2.01 7.91 -52.49 -0.41 1.59 16 17 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 18 N -0.77 -17.96 10.95 55.55 0.61 -17.35 16 19 Si 0.92 16.93 29.60 -169.99 -5.03 11.90 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 23 C -0.24 -5.67 9.80 -38.87 -0.38 -6.05 16 24 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 25 C -0.13 -1.34 6.77 -25.77 -0.17 -1.52 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 29 H 0.06 0.46 7.35 -51.93 -0.38 0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 35 H 0.08 1.08 7.75 -51.93 -0.40 0.67 16 36 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 37 H 0.41 5.15 8.65 -34.48 -0.30 4.85 16 38 H 0.10 2.19 7.59 -52.48 -0.40 1.79 16 39 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 40 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 43 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -29.18 370.90 -11.15 -40.33 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.75 Total: 10.58 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: -2.95 Total: -41.41 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.54 Total: -34.25 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.94 Total: -44.12 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 51.99 SS G_CDS: -0.62 Total: 51.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.18 -11.15 -40.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701444616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.615 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds