Wall clock time and date at job start Tue Mar 31 2020 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38473 * 119.88816 * 2 1 4 4 C 1.38205 * 120.34982 * 180.27724 * 3 2 1 5 5 C 1.38321 * 120.12342 * 359.48868 * 4 3 2 6 6 F 1.35093 * 120.11230 * 180.27338 * 5 4 3 7 7 C 1.39877 * 119.76951 * 0.25365 * 5 4 3 8 8 C 1.47570 * 120.16568 * 180.02562 * 7 5 4 9 9 O 1.21485 * 120.00393 * 0.02562 * 8 7 5 10 10 O 1.34737 * 119.99530 * 180.02562 * 8 7 5 11 11 C 1.45199 * 116.99755 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47208 * 29.99975 * 11 10 8 13 13 C 1.52994 * 109.47003 * 269.99564 * 11 10 8 14 14 C 1.50707 * 109.47100 * 149.99777 * 11 10 8 15 15 O 1.21282 * 119.99301 * 16.02426 * 14 11 10 16 16 N 1.34775 * 119.99860 * 196.02687 * 14 11 10 17 17 C 1.46496 * 120.00329 * 5.36406 * 16 14 11 18 18 C 1.46498 * 119.99731 * 185.36269 * 16 14 11 19 19 C 1.50701 * 109.47062 * 89.99806 * 18 16 14 20 20 H 1.08004 * 119.99713 * 0.02562 * 19 18 16 21 21 C 1.37876 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31514 * 119.99973 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47310 * 89.99577 * 23 21 19 25 25 H 1.48497 * 109.47635 * 209.99793 * 23 21 19 26 26 H 1.48501 * 109.47007 * 329.99771 * 23 21 19 27 27 C 1.37839 * 119.88690 * 179.76509 * 2 1 3 28 28 H 1.08996 * 109.47213 * 270.23035 * 1 2 3 29 29 H 1.09000 * 109.46900 * 30.23694 * 1 2 3 30 30 H 1.09002 * 109.46890 * 150.22893 * 1 2 3 31 31 H 1.08002 * 119.82580 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.93961 * 179.76534 * 4 3 2 33 33 H 1.08994 * 109.47165 * 306.14187 * 13 11 10 34 34 H 1.09007 * 109.47031 * 66.13947 * 13 11 10 35 35 H 1.08999 * 109.47210 * 186.13497 * 13 11 10 36 36 H 1.08999 * 109.46930 * 84.82197 * 17 16 14 37 37 H 1.08990 * 109.47484 * 204.82625 * 17 16 14 38 38 H 1.09001 * 109.47161 * 324.82611 * 17 16 14 39 39 H 1.08993 * 109.47091 * 209.99811 * 18 16 14 40 40 H 1.09003 * 109.47375 * 330.00593 * 18 16 14 41 41 H 0.97005 * 119.99769 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.06427 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2006 0.0000 4 6 3.5790 1.2117 -0.0058 5 6 4.2828 0.0210 -0.0009 6 9 5.6337 0.0321 -0.0010 7 6 3.5910 -1.1947 0.0045 8 6 4.3331 -2.4702 0.0102 9 8 5.5479 -2.4663 0.0108 10 8 3.6632 -3.6393 0.0149 11 6 4.4580 -4.8544 0.0210 12 1 5.4012 -4.6690 0.5348 13 6 4.7382 -5.2877 -1.4193 14 6 3.7026 -5.9452 0.7358 15 8 2.5125 -5.8267 0.9372 16 7 4.3496 -7.0521 1.1510 17 6 5.8051 -7.1448 1.0137 18 6 3.5972 -8.1627 1.7398 19 6 3.1808 -9.1197 0.6526 20 1 3.4502 -8.9206 -0.3742 21 6 2.4570 -10.2498 0.9688 22 7 2.0942 -11.0851 0.0201 23 14 1.9919 -10.5944 2.7448 24 1 0.6772 -9.9710 3.0421 25 1 1.9036 -12.0613 2.9578 26 1 3.0250 -10.0246 3.6466 27 6 2.1938 -1.1951 0.0049 28 1 -0.3633 0.0041 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8921 -0.5103 31 1 1.6523 2.1332 0.0004 32 1 4.1104 2.1519 -0.0096 33 1 3.7977 -5.3675 -1.9642 34 1 5.3769 -4.5487 -1.9032 35 1 5.2399 -6.2553 -1.4165 36 1 6.2819 -6.6682 1.8702 37 1 6.1000 -8.1932 0.9705 38 1 6.1165 -6.6418 0.0982 39 1 4.2250 -8.6844 2.4621 40 1 2.7106 -7.7753 2.2418 41 1 1.5846 -11.8800 0.2425 42 1 1.6530 -2.1299 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727215445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:39 Heat of formation + Delta-G solvation = -154.061172 kcal Electronic energy + Delta-G solvation = -27109.921870 eV Core-core repulsion = 22969.260627 eV Total energy + Delta-G solvation = -4140.661243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.06061 -42.04720 -40.76691 -39.89680 -37.73959 -36.76786 -34.84184 -33.72019 -33.30787 -32.38288 -30.29310 -27.67426 -27.61380 -26.45728 -25.51441 -24.13429 -23.08347 -21.66825 -20.44299 -19.37790 -19.15306 -18.71418 -18.21271 -17.59222 -17.52736 -17.30120 -16.83900 -16.67872 -16.30951 -16.06263 -15.39194 -15.21729 -14.94780 -14.80130 -14.51897 -14.48134 -14.37562 -14.27224 -13.77685 -13.70713 -13.49330 -13.25749 -13.07256 -12.95547 -12.88574 -12.70920 -12.67382 -12.47216 -12.39392 -12.06447 -12.04054 -11.75896 -11.73020 -10.84347 -10.74684 -10.33555 -9.66573 -9.54516 -8.35021 -6.40875 -0.61400 0.04653 1.06222 1.25746 1.33766 1.37253 1.45444 1.48089 2.24378 2.30585 2.45502 2.99096 3.01040 3.28776 3.30651 3.60352 3.68771 3.73756 3.75718 4.05992 4.12989 4.22801 4.40139 4.49186 4.52691 4.57276 4.72745 4.77200 4.81054 4.81984 4.87914 4.88526 4.91860 5.00927 5.03804 5.09519 5.27419 5.41170 5.41259 5.48255 5.71761 6.19515 6.36223 6.48713 6.60678 7.08721 7.25445 8.81535 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.002956 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.254474 B = 9468.995699 C =10389.568067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.105 4.105 3 C -0.038 4.038 4 C -0.153 4.153 5 C 0.134 3.866 6 F -0.132 7.132 7 C -0.182 4.182 8 C 0.504 3.496 9 O -0.518 6.518 10 O -0.334 6.334 11 C 0.081 3.919 12 H 0.123 0.877 13 C -0.159 4.159 14 C 0.506 3.494 15 O -0.571 6.571 16 N -0.597 5.597 17 C 0.064 3.936 18 C 0.223 3.777 19 C -0.539 4.539 20 H 0.034 0.966 21 C 0.014 3.986 22 N -0.943 5.943 23 Si 0.946 3.054 24 H -0.276 1.276 25 H -0.275 1.275 26 H -0.238 1.238 27 C -0.045 4.045 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 27.154 0.845 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.106 4.106 3 C -0.056 4.056 4 C -0.171 4.171 5 C 0.115 3.885 6 F -0.111 7.111 7 C -0.184 4.184 8 C 0.351 3.649 9 O -0.408 6.408 10 O -0.250 6.250 11 C 0.023 3.977 12 H 0.140 0.860 13 C -0.217 4.217 14 C 0.292 3.708 15 O -0.450 6.450 16 N -0.329 5.329 17 C -0.077 4.077 18 C 0.101 3.899 19 C -0.578 4.578 20 H 0.052 0.948 21 C -0.184 4.184 22 N -0.582 5.582 23 Si 0.768 3.232 24 H -0.201 1.201 25 H -0.200 1.200 26 H -0.161 1.161 27 C -0.063 4.063 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.202 0.798 32 H 0.194 0.806 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.828 26.982 0.926 27.145 hybrid contribution 0.145 -1.201 0.288 1.244 sum 2.973 25.780 1.215 25.980 Atomic orbital electron populations 1.20898 0.88059 1.04449 1.03782 1.20330 0.98478 0.91914 0.99838 1.21693 0.92516 0.99422 0.91940 1.21500 0.95555 0.96539 1.03515 1.18052 0.76944 0.93656 0.99870 1.91550 1.29112 1.97292 1.93115 1.19206 0.95159 0.88649 1.15379 1.21451 0.86172 0.84882 0.72440 1.90836 1.15028 1.88076 1.46880 1.86663 1.40669 1.14028 1.83621 1.22569 0.94416 0.80947 0.99792 0.85963 1.22160 1.03520 1.03926 0.92046 1.20484 0.87435 0.83556 0.79281 1.90644 1.17056 1.80029 1.57290 1.47817 1.09325 1.15706 1.60014 1.22203 0.77605 1.04749 1.03180 1.19464 0.92608 0.84160 0.93659 1.21528 1.35448 1.06501 0.94322 0.94761 1.25808 0.94807 0.95407 1.02418 1.70039 1.39362 1.13723 1.35123 0.85746 0.79870 0.77908 0.79646 1.20147 1.19982 1.16094 1.21449 0.90877 1.00512 0.93506 0.89840 0.88511 0.91520 0.79841 0.80645 0.91784 0.89001 0.88589 0.90078 0.89802 0.89666 0.92451 0.95987 0.92177 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.00 71.23 0.71 -0.38 16 2 C -0.11 -1.50 5.87 -19.90 -0.12 -1.62 16 3 C -0.04 -0.37 9.69 22.32 0.22 -0.15 16 4 C -0.15 -2.01 10.01 22.28 0.22 -1.79 16 5 C 0.13 3.02 7.29 22.69 0.17 3.19 16 6 F -0.13 -3.56 15.55 44.97 0.70 -2.86 16 7 C -0.18 -4.75 5.88 -20.06 -0.12 -4.87 16 8 C 0.50 16.24 7.87 70.28 0.55 16.79 16 9 O -0.52 -18.04 14.60 19.88 0.29 -17.75 16 10 O -0.33 -11.75 8.72 -50.23 -0.44 -12.19 16 11 C 0.08 2.76 2.14 29.85 0.06 2.83 16 12 H 0.12 3.71 6.32 -2.39 -0.02 3.70 16 13 C -0.16 -4.73 9.19 71.98 0.66 -4.07 16 14 C 0.51 21.79 6.95 87.66 0.61 22.40 16 15 O -0.57 -29.76 16.13 15.22 0.25 -29.51 16 16 N -0.60 -24.70 2.86 -851.16 -2.43 -27.13 16 17 C 0.06 1.88 9.79 127.77 1.25 3.14 16 18 C 0.22 10.82 4.25 85.63 0.36 11.19 16 19 C -0.54 -31.36 9.94 25.60 0.25 -31.11 16 20 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 21 C 0.01 0.82 5.47 84.65 0.46 1.28 16 22 N -0.94 -59.00 13.96 21.45 0.30 -58.71 16 23 Si 0.95 43.96 27.47 68.60 1.88 45.84 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 27 C -0.05 -0.99 9.26 22.53 0.21 -0.78 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.44 8.09 -2.39 -0.02 0.42 16 30 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 32 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.10 2.69 6.33 -2.39 -0.02 2.68 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.47 8.03 -2.39 -0.02 2.45 16 38 H 0.08 2.11 4.92 -2.39 -0.01 2.10 16 39 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16 40 H 0.02 1.15 6.78 -2.39 -0.02 1.13 16 41 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 42 H 0.14 3.34 7.61 -2.91 -0.02 3.32 16 Total: -1.00 -81.86 361.98 7.05 -74.80 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.99 Total: 11.44 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.51 Total: 16.05 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.13 Total: -85.84 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: 0.10 Total: -59.45 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.70 Total: -2.86 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -81.86 7.05 -74.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727215445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.257 kcal (2) G-P(sol) polarization free energy of solvation -81.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds