Wall clock time and date at job start Tue Mar 31 2020 14:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38468 * 119.88701 * 2 1 4 4 C 1.38203 * 120.35497 * 180.02562 * 3 2 1 5 5 C 1.38318 * 120.12017 * 359.97438 * 4 3 2 6 6 F 1.35102 * 120.11570 * 179.97438 * 5 4 3 7 7 C 1.39884 * 119.77206 * 359.97438 * 5 4 3 8 8 C 1.47565 * 120.16932 * 179.97438 * 7 5 4 9 9 O 1.21487 * 120.00438 * 0.02562 * 8 7 5 10 10 O 1.34723 * 119.99630 * 180.02562 * 8 7 5 11 11 C 1.45202 * 117.00259 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46505 * 330.00300 * 11 10 8 13 13 C 1.53006 * 109.47243 * 89.99845 * 11 10 8 14 14 C 1.50698 * 109.47680 * 210.00336 * 11 10 8 15 15 O 1.21281 * 119.99422 * 354.99439 * 14 11 10 16 16 N 1.34769 * 120.00321 * 175.00270 * 14 11 10 17 17 C 1.46502 * 120.00154 * 359.97438 * 16 14 11 18 18 C 1.46499 * 119.99994 * 180.02562 * 16 14 11 19 19 C 1.50703 * 109.47449 * 89.99815 * 18 16 14 20 20 H 1.07995 * 119.99737 * 359.97438 * 19 18 16 21 21 C 1.37871 * 119.99952 * 180.02562 * 19 18 16 22 22 N 1.31508 * 120.00278 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99701 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47258 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46966 * 120.00104 * 23 21 19 26 26 H 1.48504 * 109.47306 * 239.99557 * 23 21 19 27 27 C 1.37845 * 119.88986 * 180.23660 * 2 1 3 28 28 H 1.09001 * 109.47426 * 90.00550 * 1 2 3 29 29 H 1.09005 * 109.46939 * 210.00070 * 1 2 3 30 30 H 1.08995 * 109.47575 * 329.99926 * 1 2 3 31 31 H 1.08003 * 119.82335 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.94498 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47002 * 60.00200 * 13 11 10 34 34 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47050 * 300.00466 * 13 11 10 36 36 H 1.08990 * 109.47314 * 89.99806 * 17 16 14 37 37 H 1.08998 * 109.47376 * 210.01109 * 17 16 14 38 38 H 1.09005 * 109.46677 * 330.00437 * 17 16 14 39 39 H 1.09007 * 109.46830 * 209.99384 * 18 16 14 40 40 H 1.08993 * 109.47505 * 329.99405 * 18 16 14 41 41 H 0.97003 * 120.00108 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.06247 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.2005 0.0000 4 6 3.5789 1.2118 -0.0005 5 6 4.2828 0.0211 -0.0005 6 9 5.6337 0.0322 -0.0016 7 6 3.5910 -1.1947 0.0005 8 6 4.3331 -2.4702 0.0000 9 8 5.5479 -2.4662 -0.0010 10 8 3.6633 -3.6391 0.0005 11 6 4.4580 -4.8543 0.0005 12 1 5.4015 -4.6713 -0.5137 13 6 4.7378 -5.2808 1.4430 14 6 3.7030 -5.9484 -0.7094 15 8 2.5681 -5.7535 -1.0900 16 7 4.2889 -7.1435 -0.9213 17 6 5.6600 -7.3788 -0.4619 18 6 3.5551 -8.2068 -1.6119 19 6 3.8021 -8.1061 -3.0952 20 1 4.4413 -7.3276 -3.4844 21 6 3.2111 -9.0072 -3.9551 22 7 2.4323 -9.9549 -3.4811 23 14 3.5166 -8.8818 -5.7937 24 1 4.4233 -7.7382 -6.0680 25 1 4.1442 -10.1376 -6.2780 26 1 2.2258 -8.6706 -6.4968 27 6 2.1939 -1.1951 -0.0049 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6522 2.1331 -0.0004 32 1 4.1104 2.1520 -0.0009 33 1 3.7942 -5.4638 1.9573 34 1 5.3347 -6.1928 1.4429 35 1 5.2839 -4.4895 1.9565 36 1 5.6402 -7.7734 0.5538 37 1 6.1460 -8.0976 -1.1217 38 1 6.2141 -6.4402 -0.4763 39 1 3.8971 -9.1772 -1.2518 40 1 2.4888 -8.1007 -1.4131 41 1 2.0168 -10.5891 -4.0862 42 1 1.6531 -2.1299 -0.0084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727215446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:42 Heat of formation + Delta-G solvation = -156.407259 kcal Electronic energy + Delta-G solvation = -27120.484614 eV Core-core repulsion = 22979.721636 eV Total energy + Delta-G solvation = -4140.762977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.06606 -42.03434 -40.73249 -39.88827 -37.71818 -36.74011 -34.94361 -33.68446 -33.24718 -32.33595 -29.63317 -27.71319 -27.61469 -26.41571 -25.66466 -24.29219 -23.15225 -21.68209 -20.48425 -19.38269 -18.75110 -18.68469 -18.16590 -17.54785 -17.53175 -17.26166 -16.91403 -16.66020 -16.41868 -15.90938 -15.41589 -15.20806 -14.89363 -14.75620 -14.51310 -14.48164 -14.34528 -14.15938 -13.74990 -13.56444 -13.36420 -13.11937 -13.04290 -12.91166 -12.85070 -12.71365 -12.66031 -12.56058 -12.39498 -12.25253 -12.02650 -11.74098 -11.71073 -10.67649 -10.67493 -10.33844 -9.66951 -9.55727 -8.26298 -6.40837 -0.61591 0.04282 1.08192 1.26887 1.34660 1.36819 1.48401 1.56969 2.25239 2.39323 2.45206 3.00741 3.03680 3.29432 3.34737 3.60143 3.69611 3.75223 3.77815 4.05787 4.12967 4.29339 4.42814 4.52013 4.55625 4.64454 4.76693 4.81508 4.82978 4.87960 4.90464 4.93213 5.03242 5.04615 5.10264 5.18694 5.27285 5.40933 5.48101 5.71593 5.74953 6.00815 6.37764 6.56101 6.67631 7.15722 7.32497 8.81251 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.003071 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.036442 B = 9115.630460 C = 9761.004923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 C -0.038 4.038 4 C -0.153 4.153 5 C 0.133 3.867 6 F -0.133 7.133 7 C -0.182 4.182 8 C 0.504 3.496 9 O -0.520 6.520 10 O -0.334 6.334 11 C 0.078 3.922 12 H 0.112 0.888 13 C -0.161 4.161 14 C 0.502 3.498 15 O -0.576 6.576 16 N -0.598 5.598 17 C 0.067 3.933 18 C 0.260 3.740 19 C -0.548 4.548 20 H 0.050 0.950 21 C 0.011 3.989 22 N -0.924 5.924 23 Si 0.966 3.034 24 H -0.271 1.271 25 H -0.266 1.266 26 H -0.280 1.280 27 C -0.045 4.045 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.176 0.824 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.003 0.997 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 22.738 11.604 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.056 4.056 4 C -0.171 4.171 5 C 0.113 3.887 6 F -0.111 7.111 7 C -0.184 4.184 8 C 0.350 3.650 9 O -0.411 6.411 10 O -0.250 6.250 11 C 0.020 3.980 12 H 0.130 0.870 13 C -0.218 4.218 14 C 0.288 3.712 15 O -0.455 6.455 16 N -0.330 5.330 17 C -0.074 4.074 18 C 0.140 3.860 19 C -0.587 4.587 20 H 0.068 0.932 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.791 3.209 24 H -0.196 1.196 25 H -0.191 1.191 26 H -0.205 1.205 27 C -0.063 4.063 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.202 0.798 32 H 0.194 0.806 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.078 0.922 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.234 22.604 11.367 25.331 hybrid contribution 0.537 -0.786 -1.140 1.486 sum 1.771 21.817 10.227 24.161 Atomic orbital electron populations 1.20898 0.87968 1.04559 1.03718 1.20339 0.98532 0.91878 0.99805 1.21697 0.92481 0.99450 0.91944 1.21501 0.95587 0.96492 1.03526 1.18075 0.76934 0.93706 0.99945 1.91550 1.29164 1.97299 1.93133 1.19220 0.95225 0.88645 1.15352 1.21458 0.86161 0.84974 0.72411 1.90835 1.15131 1.88119 1.47012 1.86635 1.40718 1.14067 1.83541 1.22602 0.93933 0.80908 1.00555 0.86998 1.22291 1.04031 1.04585 0.90884 1.20519 0.86837 0.83840 0.79966 1.90655 1.20684 1.81195 1.52988 1.48042 1.16309 1.12544 1.56128 1.22203 0.80806 1.03367 1.01036 1.18866 0.91317 0.84879 0.90970 1.21715 1.29953 1.14030 0.92988 0.93192 1.25808 0.94363 0.94648 1.04002 1.70037 1.31865 1.17474 1.37014 0.85387 0.78081 0.78427 0.79023 1.19573 1.19122 1.20526 1.21451 0.90827 1.00555 0.93468 0.90049 0.91345 0.88381 0.79768 0.80632 0.91018 0.87072 0.89712 0.89493 0.90533 0.89731 0.94697 0.97867 0.92227 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.00 71.23 0.71 -0.45 16 2 C -0.11 -1.59 5.87 -19.90 -0.12 -1.71 16 3 C -0.04 -0.40 9.69 22.32 0.22 -0.19 16 4 C -0.15 -2.19 10.01 22.28 0.22 -1.96 16 5 C 0.13 3.18 7.29 22.69 0.17 3.35 16 6 F -0.13 -3.78 15.55 44.97 0.70 -3.08 16 7 C -0.18 -5.03 5.88 -20.06 -0.12 -5.15 16 8 C 0.50 17.08 7.87 70.28 0.55 17.63 16 9 O -0.52 -19.17 14.60 19.88 0.29 -18.88 16 10 O -0.33 -12.16 8.67 -49.96 -0.43 -12.59 16 11 C 0.08 2.71 2.17 29.85 0.06 2.78 16 12 H 0.11 3.75 6.15 -2.39 -0.01 3.73 16 13 C -0.16 -4.13 9.28 71.98 0.67 -3.46 16 14 C 0.50 22.40 7.10 87.66 0.62 23.03 16 15 O -0.58 -31.49 16.09 15.72 0.25 -31.23 16 16 N -0.60 -25.97 2.86 -851.15 -2.43 -28.40 16 17 C 0.07 2.04 8.92 127.77 1.14 3.18 16 18 C 0.26 14.10 5.16 85.63 0.44 14.54 16 19 C -0.55 -32.07 9.39 25.60 0.24 -31.83 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.01 0.65 5.46 84.65 0.46 1.11 16 22 N -0.92 -55.71 13.29 21.44 0.28 -55.42 16 23 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 C -0.04 -1.03 9.26 22.53 0.21 -0.82 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.79 8.08 -2.38 -0.02 0.77 16 30 H 0.10 0.47 8.08 -2.39 -0.02 0.45 16 31 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.11 2.34 5.12 -2.39 -0.01 2.32 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.03 7.02 -2.39 -0.02 2.01 16 37 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 38 H 0.08 2.13 6.08 -2.38 -0.01 2.11 16 39 H 0.04 1.87 8.07 -2.38 -0.02 1.85 16 40 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.14 3.49 7.61 -2.91 -0.02 3.47 16 Total: -1.00 -81.71 363.63 7.22 -74.49 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.05 Total: 7.65 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 5.48 Total: 20.05 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.15 Total: -83.83 kcal Atomic # 8 Polarization: -62.81 SS G_CDS: 0.11 Total: -62.70 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.70 Total: -3.08 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.71 7.22 -74.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727215446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.914 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds