Wall clock time and date at job start Tue Mar 31 2020 14:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37843 * 119.93843 * 2 1 4 4 C 1.39680 * 119.87398 * 180.02562 * 3 2 1 5 5 C 1.47598 * 120.12629 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99723 * 0.02562 * 5 4 3 7 7 O 1.34722 * 120.00326 * 180.02562 * 5 4 3 8 8 C 1.45207 * 117.00210 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.46516 * 30.00131 * 8 7 5 10 10 C 1.52999 * 109.46938 * 270.00386 * 8 7 5 11 11 C 1.50700 * 109.47111 * 150.00039 * 8 7 5 12 12 O 1.21282 * 119.99821 * 16.02990 * 11 8 7 13 13 N 1.34779 * 119.99782 * 196.02931 * 11 8 7 14 14 C 1.46498 * 119.99857 * 5.36421 * 13 11 8 15 15 C 1.46496 * 119.99850 * 185.36635 * 13 11 8 16 16 C 1.50701 * 109.47317 * 89.99900 * 15 13 11 17 17 H 1.08001 * 119.99754 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00206 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47004 * 59.99883 * 20 18 16 22 22 H 1.48501 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47178 * 300.00039 * 20 18 16 24 24 C 1.39732 * 119.75489 * 359.97438 * 4 3 2 25 25 C 1.37793 * 119.87328 * 0.02562 * 24 4 3 26 26 C 1.38647 * 119.93651 * 179.97438 * 2 1 3 27 27 F 1.35100 * 119.87659 * 0.27185 * 26 2 1 28 28 H 1.09000 * 109.47042 * 270.00810 * 1 2 3 29 29 H 1.09009 * 109.47081 * 30.00518 * 1 2 3 30 30 H 1.08996 * 109.47239 * 150.00103 * 1 2 3 31 31 H 1.08004 * 120.06137 * 359.97106 * 3 2 1 32 32 H 1.09000 * 109.46923 * 186.13669 * 10 8 7 33 33 H 1.08998 * 109.47419 * 306.13339 * 10 8 7 34 34 H 1.09000 * 109.47398 * 66.13483 * 10 8 7 35 35 H 1.09001 * 109.46959 * 84.82655 * 14 13 11 36 36 H 1.09007 * 109.46933 * 204.82572 * 14 13 11 37 37 H 1.09001 * 109.47633 * 324.82216 * 14 13 11 38 38 H 1.08996 * 109.47303 * 209.99826 * 15 13 11 39 39 H 1.09006 * 109.47339 * 329.99840 * 15 13 11 40 40 H 0.96999 * 119.99911 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.06323 * 179.97438 * 24 4 3 42 42 H 1.08000 * 119.93795 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1945 0.0000 4 6 3.5917 1.1929 -0.0005 5 6 4.3340 2.4687 -0.0011 6 8 3.7300 3.5228 -0.0006 7 8 5.6812 2.4643 -0.0022 8 6 6.3447 3.7559 -0.0033 9 1 5.7194 4.4859 0.5108 10 6 6.5765 4.2089 -1.4461 11 6 7.6693 3.6408 0.7062 12 8 8.1555 2.5484 0.9092 13 7 8.3135 4.7518 1.1150 14 6 7.6739 6.0624 0.9760 15 6 9.6534 4.6488 1.6983 16 6 10.6863 4.7563 0.6063 17 1 10.3758 4.8878 -0.4197 18 6 12.0278 4.6857 0.9169 19 7 12.4060 4.5251 2.1662 20 14 13.3082 4.8183 -0.4368 21 1 13.1675 6.1268 -1.1247 22 1 14.6664 4.7140 0.1545 23 1 13.1085 3.7201 -1.4163 24 6 4.2839 -0.0209 -0.0005 25 6 3.5858 -1.2090 -0.0005 26 6 2.1989 -1.2015 0.0005 27 9 1.5196 -2.3693 -0.0045 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6549 2.1298 -0.0005 32 1 7.1697 5.1233 -1.4490 33 1 7.1086 3.4290 -1.9908 34 1 5.6164 4.3972 -1.9266 35 1 7.0276 6.2442 1.8347 36 1 8.4394 6.8369 0.9269 37 1 7.0789 6.0814 0.0629 38 1 9.7996 5.4548 2.4173 39 1 9.7570 3.6883 2.2032 40 1 13.3498 4.4759 2.3848 41 1 5.3638 -0.0280 -0.0014 42 1 4.1197 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728997301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:19 Heat of formation + Delta-G solvation = -139.356921 kcal Electronic energy + Delta-G solvation = -26692.105902 eV Core-core repulsion = 22552.082282 eV Total energy + Delta-G solvation = -4140.023619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.36177 -40.86690 -39.44011 -38.63241 -36.41933 -34.91903 -33.48680 -32.83495 -31.80669 -31.01904 -27.82500 -27.47416 -26.11262 -25.14979 -24.00613 -22.67865 -22.36387 -20.68311 -18.89534 -18.14119 -17.95216 -17.05455 -16.59225 -16.53034 -16.22789 -16.05747 -15.88899 -15.28361 -14.76881 -14.63638 -14.35856 -13.86362 -13.80523 -13.69549 -13.56923 -13.46604 -13.02129 -12.84504 -12.45520 -12.34819 -12.29689 -12.12429 -12.09071 -11.76092 -11.50854 -11.37290 -11.25797 -10.95973 -10.77378 -10.71652 -10.57520 -10.20482 -9.70618 -9.41664 -9.09844 -8.95419 -8.47624 -7.75553 -6.08763 -4.14350 0.21722 0.80038 2.21158 2.35529 3.19276 3.28129 3.29281 3.34013 3.37417 3.74598 3.83320 4.22673 4.32322 4.39728 4.47790 4.72104 4.80325 4.80936 4.99128 5.07304 5.11176 5.18067 5.25737 5.32316 5.46533 5.50067 5.58986 5.65975 5.69916 5.74816 5.78946 5.84070 5.90176 6.05801 6.21424 6.31875 6.37234 6.95599 7.36821 7.43192 7.60920 7.86879 8.16517 8.25698 8.80002 8.95110 9.50805 10.99308 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.002499 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.749966 B =11200.855261 C =11802.505773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.135 4.135 3 C -0.028 4.028 4 C -0.129 4.129 5 C 0.509 3.491 6 O -0.507 6.507 7 O -0.321 6.321 8 C 0.072 3.928 9 H 0.104 0.896 10 C -0.165 4.165 11 C 0.510 3.490 12 O -0.521 6.521 13 N -0.596 5.596 14 C 0.073 3.927 15 C 0.246 3.754 16 C -0.531 4.531 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.033 4.033 25 C -0.162 4.162 26 C 0.130 3.870 27 F -0.132 7.132 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.265 0.735 41 H 0.155 0.845 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.633 -5.735 -5.247 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 C -0.046 4.046 4 C -0.131 4.131 5 C 0.354 3.646 6 O -0.397 6.397 7 O -0.236 6.236 8 C 0.013 3.987 9 H 0.122 0.878 10 C -0.222 4.222 11 C 0.295 3.705 12 O -0.396 6.396 13 N -0.329 5.329 14 C -0.071 4.071 15 C 0.127 3.873 16 C -0.569 4.569 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.051 4.051 25 C -0.180 4.180 26 C 0.110 3.890 27 F -0.110 7.110 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.166 0.834 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.173 0.827 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.347 -6.042 -4.998 23.683 hybrid contribution 0.728 0.106 -0.704 1.019 sum -21.619 -5.937 -5.702 23.133 Atomic orbital electron populations 1.20736 0.89354 1.03676 1.03183 1.19841 0.97512 0.91301 1.04935 1.21021 0.91939 0.98169 0.93469 1.19150 0.93165 0.91203 1.09566 1.21060 0.81523 0.89312 0.72678 1.90815 1.69553 1.33032 1.46295 1.86660 1.19379 1.34446 1.83086 1.22716 0.93496 0.83419 0.99037 0.87823 1.22171 1.03224 1.03290 0.93560 1.19734 0.85208 0.85398 0.80203 1.90693 1.67364 1.26308 1.55257 1.48077 1.19370 1.04815 1.60674 1.21844 0.98486 0.86508 1.00249 1.19370 0.75121 0.98945 0.93852 1.21381 0.90848 1.50772 0.93935 0.92406 1.24938 0.98463 0.94948 0.95690 1.69922 1.16659 1.49390 1.17234 0.86542 0.80299 0.78627 0.81862 1.20211 1.21138 1.20130 1.21512 1.01773 0.90048 0.91797 1.21180 0.91942 1.00254 1.04672 1.17880 0.90075 0.81012 0.99989 1.91509 1.80121 1.46078 1.93318 0.90499 0.90563 0.90942 0.83409 0.89373 0.90567 0.91202 0.93379 0.90032 0.92225 0.94606 0.93555 0.92564 0.82687 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.83 36.01 0.35 -0.35 16 2 C -0.13 -1.18 5.88 -104.62 -0.62 -1.80 16 3 C -0.03 -0.27 9.24 -39.19 -0.36 -0.63 16 4 C -0.13 -1.52 5.87 -104.98 -0.62 -2.13 16 5 C 0.51 7.29 7.87 34.55 0.27 7.56 16 6 O -0.51 -7.78 15.60 -19.26 -0.30 -8.08 16 7 O -0.32 -5.23 8.71 -47.08 -0.41 -5.64 16 8 C 0.07 1.18 2.14 -27.88 -0.06 1.12 16 9 H 0.10 1.56 6.31 -51.93 -0.33 1.23 16 10 C -0.17 -2.30 9.19 37.16 0.34 -1.96 16 11 C 0.51 10.76 6.95 -10.98 -0.08 10.68 16 12 O -0.52 -13.20 16.13 -13.54 -0.22 -13.42 16 13 N -0.60 -12.50 2.86 -182.95 -0.52 -13.02 16 14 C 0.07 1.13 9.79 59.85 0.59 1.72 16 15 C 0.25 6.33 5.18 -5.20 -0.03 6.30 16 16 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 20 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.03 -0.35 9.61 -39.19 -0.38 -0.73 16 25 C -0.16 -1.48 10.01 -39.58 -0.40 -1.88 16 26 C 0.13 1.21 7.25 -39.26 -0.28 0.93 16 27 F -0.13 -1.24 16.46 2.25 0.04 -1.21 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.39 8.08 -51.92 -0.42 -0.03 16 30 H 0.07 0.43 7.63 -51.93 -0.40 0.03 16 31 H 0.15 1.30 7.65 -52.48 -0.40 0.90 16 32 H 0.09 1.17 6.33 -51.93 -0.33 0.84 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.27 8.03 -51.92 -0.42 0.85 16 37 H 0.06 0.77 4.92 -51.93 -0.26 0.51 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.16 1.68 7.61 -52.49 -0.40 1.28 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -33.45 366.30 -7.27 -40.72 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.41 Total: -1.30 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.68 Total: 5.44 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.21 Total: -38.49 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.93 Total: -27.14 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.45 -7.27 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728997301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.637 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds