Wall clock time and date at job start Tue Mar 31 2020 14:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37843 * 119.93843 * 2 1 4 4 C 1.39680 * 119.87398 * 180.02562 * 3 2 1 5 5 C 1.47598 * 120.12629 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99723 * 0.02562 * 5 4 3 7 7 O 1.34722 * 120.00326 * 180.02562 * 5 4 3 8 8 C 1.45207 * 117.00210 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.46516 * 30.00131 * 8 7 5 10 10 C 1.52999 * 109.46938 * 270.00386 * 8 7 5 11 11 C 1.50700 * 109.47111 * 150.00039 * 8 7 5 12 12 O 1.21282 * 119.99821 * 16.02990 * 11 8 7 13 13 N 1.34779 * 119.99782 * 196.02931 * 11 8 7 14 14 C 1.46498 * 119.99857 * 5.36421 * 13 11 8 15 15 C 1.46496 * 119.99850 * 185.36635 * 13 11 8 16 16 C 1.50701 * 109.47317 * 89.99900 * 15 13 11 17 17 H 1.08001 * 119.99754 * 359.97438 * 16 15 13 18 18 C 1.37878 * 120.00206 * 180.02562 * 16 15 13 19 19 N 1.31517 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00154 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47004 * 59.99883 * 20 18 16 22 22 H 1.48501 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47178 * 300.00039 * 20 18 16 24 24 C 1.39732 * 119.75489 * 359.97438 * 4 3 2 25 25 C 1.37793 * 119.87328 * 0.02562 * 24 4 3 26 26 C 1.38647 * 119.93651 * 179.97438 * 2 1 3 27 27 F 1.35100 * 119.87659 * 0.27185 * 26 2 1 28 28 H 1.09000 * 109.47042 * 270.00810 * 1 2 3 29 29 H 1.09009 * 109.47081 * 30.00518 * 1 2 3 30 30 H 1.08996 * 109.47239 * 150.00103 * 1 2 3 31 31 H 1.08004 * 120.06137 * 359.97106 * 3 2 1 32 32 H 1.09000 * 109.46923 * 186.13669 * 10 8 7 33 33 H 1.08998 * 109.47419 * 306.13339 * 10 8 7 34 34 H 1.09000 * 109.47398 * 66.13483 * 10 8 7 35 35 H 1.09001 * 109.46959 * 84.82655 * 14 13 11 36 36 H 1.09007 * 109.46933 * 204.82572 * 14 13 11 37 37 H 1.09001 * 109.47633 * 324.82216 * 14 13 11 38 38 H 1.08996 * 109.47303 * 209.99826 * 15 13 11 39 39 H 1.09006 * 109.47339 * 329.99840 * 15 13 11 40 40 H 0.96999 * 119.99911 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.06323 * 179.97438 * 24 4 3 42 42 H 1.08000 * 119.93795 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1945 0.0000 4 6 3.5917 1.1929 -0.0005 5 6 4.3340 2.4687 -0.0011 6 8 3.7300 3.5228 -0.0006 7 8 5.6812 2.4643 -0.0022 8 6 6.3447 3.7559 -0.0033 9 1 5.7194 4.4859 0.5108 10 6 6.5765 4.2089 -1.4461 11 6 7.6693 3.6408 0.7062 12 8 8.1555 2.5484 0.9092 13 7 8.3135 4.7518 1.1150 14 6 7.6739 6.0624 0.9760 15 6 9.6534 4.6488 1.6983 16 6 10.6863 4.7563 0.6063 17 1 10.3758 4.8878 -0.4197 18 6 12.0278 4.6857 0.9169 19 7 12.4060 4.5251 2.1662 20 14 13.3082 4.8183 -0.4368 21 1 13.1675 6.1268 -1.1247 22 1 14.6664 4.7140 0.1545 23 1 13.1085 3.7201 -1.4163 24 6 4.2839 -0.0209 -0.0005 25 6 3.5858 -1.2090 -0.0005 26 6 2.1989 -1.2015 0.0005 27 9 1.5196 -2.3693 -0.0045 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6549 2.1298 -0.0005 32 1 7.1697 5.1233 -1.4490 33 1 7.1086 3.4290 -1.9908 34 1 5.6164 4.3972 -1.9266 35 1 7.0276 6.2442 1.8347 36 1 8.4394 6.8369 0.9269 37 1 7.0789 6.0814 0.0629 38 1 9.7996 5.4548 2.4173 39 1 9.7570 3.6883 2.2032 40 1 13.3498 4.4759 2.3848 41 1 5.3638 -0.0280 -0.0014 42 1 4.1197 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728997301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:18 Heat of formation + Delta-G solvation = -157.686830 kcal Electronic energy + Delta-G solvation = -26692.900746 eV Core-core repulsion = 22552.082282 eV Total energy + Delta-G solvation = -4140.818464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.10546 -42.03221 -40.74570 -39.76240 -37.65221 -36.68894 -34.87037 -34.17116 -33.08396 -31.94678 -29.70705 -28.11338 -27.58372 -26.33074 -25.52433 -23.94221 -23.38601 -21.76669 -20.43527 -19.19702 -18.74568 -18.68897 -18.29215 -17.61628 -17.40462 -17.17309 -16.92821 -16.81310 -16.25581 -16.17899 -15.44662 -14.92122 -14.82949 -14.57969 -14.46440 -14.30305 -14.26671 -14.16015 -13.77176 -13.68043 -13.54939 -13.33944 -13.14893 -12.97349 -12.96537 -12.81770 -12.66396 -12.52335 -12.19674 -12.13106 -11.98178 -11.82938 -11.73367 -10.64848 -10.63818 -10.16123 -9.85925 -9.52895 -8.22854 -6.37813 -0.63801 0.06516 1.14251 1.24926 1.38379 1.42509 1.49237 1.58971 2.29815 2.42216 2.45241 3.00384 3.07398 3.37052 3.41189 3.54014 3.66333 3.75416 3.81990 4.00024 4.04405 4.28259 4.41200 4.56257 4.58786 4.64117 4.65529 4.73939 4.76614 4.85798 4.91784 4.96758 5.05568 5.08707 5.10579 5.15650 5.19786 5.23738 5.51143 5.64035 5.77846 6.03000 6.44589 6.60041 6.70934 7.18566 7.35495 8.84557 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.002499 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.749966 B =11200.855261 C =11802.505773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.130 4.130 3 C -0.025 4.025 4 C -0.146 4.146 5 C 0.511 3.489 6 O -0.519 6.519 7 O -0.338 6.338 8 C 0.082 3.918 9 H 0.123 0.877 10 C -0.159 4.159 11 C 0.502 3.498 12 O -0.577 6.577 13 N -0.600 5.600 14 C 0.066 3.934 15 C 0.258 3.742 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.259 1.259 22 H -0.280 1.280 23 H -0.277 1.277 24 C -0.041 4.041 25 C -0.158 4.158 26 C 0.127 3.873 27 F -0.131 7.131 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.000 1.000 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.489 -5.056 -6.845 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.043 4.043 4 C -0.148 4.148 5 C 0.357 3.643 6 O -0.409 6.409 7 O -0.253 6.253 8 C 0.023 3.977 9 H 0.141 0.859 10 C -0.216 4.216 11 C 0.289 3.711 12 O -0.456 6.456 13 N -0.332 5.332 14 C -0.076 4.076 15 C 0.138 3.862 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.183 1.183 22 H -0.206 1.206 23 H -0.202 1.202 24 C -0.060 4.060 25 C -0.177 4.177 26 C 0.108 3.892 27 F -0.109 7.109 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.018 0.982 40 H 0.076 0.924 41 H 0.164 0.836 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -24.247 -5.321 -6.607 25.688 hybrid contribution 1.212 -0.165 -0.148 1.232 sum -23.035 -5.486 -6.755 24.624 Atomic orbital electron populations 1.20836 0.87349 1.04688 1.04130 1.20105 0.98904 0.90568 1.03466 1.21137 0.91048 0.99070 0.93049 1.19164 0.93867 0.90246 1.11498 1.21452 0.80658 0.90178 0.72008 1.90792 1.69400 1.33583 1.47157 1.86669 1.20723 1.34427 1.83507 1.22590 0.90907 0.84130 1.00027 0.85921 1.22181 1.04654 1.03174 0.91637 1.20595 0.86657 0.84418 0.79461 1.90655 1.69217 1.28376 1.57388 1.48061 1.17982 1.07193 1.59996 1.22165 0.98855 0.83510 1.03030 1.18869 0.77793 0.96124 0.93448 1.21668 0.91678 1.50682 0.94256 0.92288 1.25872 1.00761 0.94396 0.98109 1.70049 1.17243 1.50174 1.19326 0.85455 0.77425 0.79188 0.78686 1.18300 1.20563 1.20207 1.21458 1.01477 0.90440 0.92576 1.21328 0.92147 1.00419 1.03781 1.18009 0.90168 0.81302 0.99756 1.91515 1.80061 1.46074 1.93263 0.89474 0.89076 0.90472 0.82343 0.88413 0.91623 0.88671 0.90918 0.90091 0.88978 0.95201 0.98176 0.92361 0.83606 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.83 71.24 0.70 -0.42 16 2 C -0.13 -2.01 5.88 -19.86 -0.12 -2.13 16 3 C -0.02 -0.45 9.24 22.52 0.21 -0.24 16 4 C -0.15 -3.34 5.87 -20.10 -0.12 -3.45 16 5 C 0.51 14.27 7.87 70.29 0.55 14.83 16 6 O -0.52 -15.10 15.60 19.87 0.31 -14.79 16 7 O -0.34 -11.02 8.71 -50.08 -0.44 -11.45 16 8 C 0.08 2.61 2.14 29.85 0.06 2.67 16 9 H 0.12 3.44 6.31 -2.39 -0.02 3.42 16 10 C -0.16 -4.15 9.19 71.98 0.66 -3.49 16 11 C 0.50 21.56 6.95 87.66 0.61 22.17 16 12 O -0.58 -30.71 16.13 15.22 0.25 -30.46 16 13 N -0.60 -25.42 2.86 -851.13 -2.43 -27.85 16 14 C 0.07 1.94 9.79 127.77 1.25 3.19 16 15 C 0.26 13.83 5.18 85.63 0.44 14.28 16 16 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 17 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 18 C 0.01 0.44 5.46 84.65 0.46 0.91 16 19 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 20 Si 0.97 44.08 29.54 68.60 2.03 46.10 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 C -0.04 -0.87 9.61 22.53 0.22 -0.66 16 25 C -0.16 -2.74 10.01 22.27 0.22 -2.52 16 26 C 0.13 2.16 7.25 22.48 0.16 2.32 16 27 F -0.13 -2.22 16.46 44.97 0.74 -1.48 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.65 8.08 -2.38 -0.02 0.63 16 30 H 0.08 0.72 7.63 -2.39 -0.02 0.70 16 31 H 0.16 2.47 7.65 -2.91 -0.02 2.45 16 32 H 0.10 2.34 6.33 -2.39 -0.02 2.32 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.40 8.03 -2.38 -0.02 2.38 16 37 H 0.09 2.10 4.92 -2.39 -0.01 2.09 16 38 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 39 H 0.00 0.01 7.36 -2.38 -0.02 -0.01 16 40 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 41 H 0.15 3.32 7.61 -2.91 -0.02 3.29 16 42 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -74.67 366.30 7.35 -67.32 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.05 Total: 11.02 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 5.56 Total: 16.99 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.15 Total: -83.25 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: 0.12 Total: -56.71 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.74 Total: -1.48 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.67 7.35 -67.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728997301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.365 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds