Wall clock time and date at job start Tue Mar 31 2020 13:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86805 * 119.99566 * 2 1 4 4 H 1.48496 * 109.46936 * 269.99751 * 3 2 1 5 5 H 1.48502 * 109.47289 * 30.00162 * 3 2 1 6 6 H 1.48500 * 109.46915 * 150.00374 * 3 2 1 7 7 C 1.38781 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99767 * 0.02562 * 7 2 1 9 9 O 1.34865 * 119.99791 * 179.97438 * 7 2 1 10 10 C 1.34808 * 116.99513 * 179.97438 * 9 7 2 11 11 O 1.21575 * 120.00438 * 0.02562 * 10 9 7 12 12 C 1.47114 * 120.00136 * 180.02562 * 10 9 7 13 13 C 1.39978 * 120.16680 * 5.27154 * 12 10 9 14 14 C 1.37980 * 119.88494 * 180.02562 * 13 12 10 15 15 O 1.36044 * 119.88351 * 179.97438 * 14 13 12 16 16 C 1.42901 * 117.00054 * 5.43450 * 15 14 13 17 17 C 1.53001 * 109.47268 * 154.97268 * 16 15 14 18 18 C 1.52995 * 109.47326 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46919 * 299.99491 * 18 17 16 20 20 C 1.53001 * 109.46706 * 60.00129 * 19 18 17 21 21 C 1.53000 * 109.46817 * 274.96836 * 16 15 14 22 22 C 1.39327 * 120.22850 * 0.25656 * 14 13 12 23 23 F 1.35103 * 119.82455 * 179.74400 * 22 14 13 24 24 C 1.38188 * 120.35220 * 359.48711 * 22 14 13 25 25 C 1.38821 * 120.10668 * 0.51180 * 24 22 14 26 26 N 1.39039 * 120.11682 * 179.76749 * 25 24 22 27 27 H 0.97001 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05786 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.47327 * 34.96929 * 16 15 14 30 30 H 1.09000 * 109.47223 * 59.99598 * 17 16 15 31 31 H 1.09003 * 109.47063 * 299.99660 * 17 16 15 32 32 H 1.09000 * 109.47463 * 59.99542 * 18 17 16 33 33 H 1.08997 * 109.47542 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.46979 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47095 * 300.00276 * 19 18 17 36 36 H 1.09003 * 109.47063 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47223 * 60.00226 * 20 19 18 38 38 H 1.08998 * 109.47623 * 299.99763 * 21 16 15 39 39 H 1.08999 * 109.47027 * 60.00610 * 21 16 15 40 40 H 1.07998 * 119.94866 * 180.25906 * 24 22 14 41 41 H 0.97004 * 120.00630 * 154.33810 * 26 25 24 42 42 H 0.97009 * 120.00457 * 334.33749 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4457 2.6528 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2018 -0.0005 8 1 1.4684 -2.1371 -0.0014 9 8 3.3570 -1.2017 -0.0011 10 6 3.9690 -2.4029 -0.0010 11 8 3.3069 -3.4226 -0.0010 12 6 5.4381 -2.4799 -0.0010 13 6 6.2037 -1.3133 0.1102 14 6 7.5812 -1.3923 0.1090 15 8 8.3252 -0.2584 0.2165 16 6 7.6183 0.9620 0.4467 17 6 8.5434 1.9644 1.1398 18 6 7.7864 3.2708 1.3867 19 6 7.3179 3.8492 0.0500 20 6 6.3928 2.8469 -0.6431 21 6 7.1503 1.5401 -0.8903 22 6 8.2128 -2.6286 -0.0078 23 9 9.5622 -2.6960 -0.0132 24 6 7.4665 -3.7869 -0.1128 25 6 6.0797 -3.7241 -0.1132 26 7 5.3286 -4.8889 -0.2237 27 1 -0.4850 0.8400 0.0004 28 1 5.7170 -0.3530 0.1958 29 1 6.7535 0.7670 1.0809 30 1 9.4082 2.1594 0.5056 31 1 8.8769 1.5526 2.0923 32 1 6.9218 3.0755 2.0211 33 1 8.4453 3.9847 1.8809 34 1 6.7789 4.7802 0.2259 35 1 8.1824 4.0446 -0.5844 36 1 6.0593 3.2587 -1.5957 37 1 5.5282 2.6515 -0.0087 38 1 8.0150 1.7352 -1.5246 39 1 6.4912 0.8261 -1.3841 40 1 7.9629 -4.7422 -0.1988 41 1 4.4278 -4.9211 0.1347 42 1 5.7054 -5.6696 -0.6592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741034490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:56 Heat of formation + Delta-G solvation = -147.635478 kcal Electronic energy + Delta-G solvation = -28214.594510 eV Core-core repulsion = 24074.211905 eV Total energy + Delta-G solvation = -4140.382605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.72997 -40.41549 -39.42318 -38.13752 -36.85409 -35.36924 -33.49075 -32.42735 -31.04693 -30.81727 -30.00947 -27.83656 -25.73585 -23.91103 -22.92727 -22.62911 -21.63181 -20.36533 -19.93475 -18.26432 -17.98855 -17.51851 -17.25788 -16.39895 -15.87725 -15.65983 -15.47019 -14.99318 -14.86598 -14.75566 -14.62154 -14.40841 -14.17821 -13.78501 -13.59677 -13.15679 -12.90922 -12.80947 -12.51553 -12.32555 -12.27873 -12.02129 -11.84858 -11.59358 -11.34331 -11.22834 -11.04717 -10.62238 -10.61832 -10.54803 -10.37169 -10.26599 -9.82094 -9.52679 -9.23487 -8.81034 -8.74984 -7.19998 -6.49564 -4.20836 0.90160 1.55573 3.04186 3.13905 3.15532 3.21820 3.24898 3.97733 4.04697 4.08394 4.13306 4.45584 4.56573 4.58776 4.81363 4.83661 5.02004 5.02927 5.06414 5.13580 5.27712 5.33489 5.38428 5.49007 5.55347 5.61705 5.71946 5.79890 5.88400 5.93120 5.97685 6.02617 6.09864 6.12078 6.16650 6.27795 6.32286 6.49864 6.62975 7.45473 7.55509 7.72789 7.91863 8.17007 8.54849 8.88503 9.55628 10.58131 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.006952 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.918767 B = 4026.935786 C = 7158.201537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.374 4.374 8 H 0.112 0.888 9 O -0.241 6.241 10 C 0.459 3.541 11 O -0.543 6.543 12 C -0.144 4.144 13 C -0.096 4.096 14 C 0.033 3.967 15 O -0.307 6.307 16 C 0.083 3.917 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.146 4.146 22 C 0.133 3.867 23 F -0.132 7.132 24 C -0.209 4.209 25 C 0.262 3.738 26 N -0.860 5.860 27 H 0.281 0.719 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.419 0.581 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.120 2.963 0.548 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.449 4.449 8 H 0.130 0.870 9 O -0.148 6.148 10 C 0.308 3.692 11 O -0.440 6.440 12 C -0.150 4.150 13 C -0.116 4.116 14 C -0.014 4.014 15 O -0.221 6.221 16 C 0.027 3.973 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.183 4.183 22 C 0.112 3.888 23 F -0.111 7.111 24 C -0.233 4.233 25 C 0.152 3.848 26 N -0.408 5.408 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.161 0.839 41 H 0.259 0.741 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 16.937 2.927 0.564 17.197 hybrid contribution -0.040 0.432 -0.120 0.450 sum 16.896 3.359 0.444 17.233 Atomic orbital electron populations 1.69593 1.05720 1.28621 1.46579 1.24563 0.95024 0.98706 0.95557 0.86319 0.80454 0.81638 0.79217 1.19491 1.20559 1.18087 1.20701 0.76048 0.97090 1.51065 0.87028 1.83547 1.23998 1.30818 1.76469 1.20118 0.87111 0.82653 0.79304 1.90409 1.66212 1.35525 1.51849 1.18772 0.91111 0.91953 1.13189 1.21336 0.91299 0.99605 0.99315 1.18463 0.90018 0.85976 1.06952 1.86104 1.34864 1.13302 1.87858 1.22501 0.95527 0.82383 0.96884 1.21534 0.98362 0.94087 1.00826 1.21523 1.00325 0.95930 0.97749 1.21580 0.99485 0.98349 0.96458 1.21588 0.98553 0.94734 1.01337 1.22126 1.01079 0.97843 0.97301 1.16763 0.76692 0.91213 1.04160 1.91477 1.28709 1.97054 1.93862 1.20339 0.92019 0.97465 1.13442 1.17172 0.89307 0.86424 0.91852 1.42971 1.20554 1.11251 1.66051 0.90835 0.83242 0.90600 0.90869 0.91038 0.91487 0.91204 0.91717 0.91789 0.91234 0.91352 0.90800 0.90810 0.83857 0.74066 0.78068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.49 0.77 -24.08 16 2 C 0.07 1.83 5.50 -17.52 -0.10 1.73 16 3 Si 0.90 20.36 28.62 -169.99 -4.86 15.49 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.37 -10.72 10.11 30.93 0.31 -10.41 16 8 H 0.11 3.52 7.09 -52.49 -0.37 3.14 16 9 O -0.24 -6.17 7.83 -21.88 -0.17 -6.34 16 10 C 0.46 10.76 7.81 34.33 0.27 11.02 16 11 O -0.54 -13.46 12.99 -19.32 -0.25 -13.71 16 12 C -0.14 -2.74 5.89 -104.82 -0.62 -3.36 16 13 C -0.10 -1.67 7.80 -39.02 -0.30 -1.98 16 14 C 0.03 0.52 6.60 -39.27 -0.26 0.26 16 15 O -0.31 -4.66 9.66 -19.88 -0.19 -4.85 16 16 C 0.08 1.11 2.11 -26.73 -0.06 1.05 16 17 C -0.11 -1.19 5.57 -26.73 -0.15 -1.34 16 18 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 19 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 20 C -0.12 -1.51 5.92 -26.70 -0.16 -1.66 16 21 C -0.15 -1.89 5.19 -26.70 -0.14 -2.02 16 22 C 0.13 2.01 7.31 -39.19 -0.29 1.72 16 23 F -0.13 -1.98 17.10 2.25 0.04 -1.95 16 24 C -0.21 -2.92 9.89 -39.38 -0.39 -3.31 16 25 C 0.26 4.25 6.76 -83.55 -0.56 3.68 16 26 N -0.86 -12.68 8.57 32.57 0.28 -12.40 16 27 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.15 2.65 4.95 -52.49 -0.26 2.39 16 29 H 0.08 1.08 6.30 -51.93 -0.33 0.75 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.06 6.91 -51.93 -0.36 0.70 16 40 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.42 7.13 5.94 -40.82 -0.24 6.89 16 42 H 0.39 4.34 8.91 -40.82 -0.36 3.98 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -30.32 348.10 -7.18 -37.51 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.29 Total: 12.31 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.76 Total: -7.23 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 1.05 Total: -36.48 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.61 Total: -24.90 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.86 Total: 15.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.32 -7.18 -37.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741034490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.129 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds