Wall clock time and date at job start Tue Mar 31 2020 13:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86805 * 119.99566 * 2 1 4 4 H 1.48496 * 109.46936 * 269.99751 * 3 2 1 5 5 H 1.48502 * 109.47289 * 30.00162 * 3 2 1 6 6 H 1.48500 * 109.46915 * 150.00374 * 3 2 1 7 7 C 1.38781 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99767 * 0.02562 * 7 2 1 9 9 O 1.34865 * 119.99791 * 179.97438 * 7 2 1 10 10 C 1.34808 * 116.99513 * 179.97438 * 9 7 2 11 11 O 1.21575 * 120.00438 * 0.02562 * 10 9 7 12 12 C 1.47114 * 120.00136 * 180.02562 * 10 9 7 13 13 C 1.39978 * 120.16680 * 5.27154 * 12 10 9 14 14 C 1.37980 * 119.88494 * 180.02562 * 13 12 10 15 15 O 1.36044 * 119.88351 * 179.97438 * 14 13 12 16 16 C 1.42901 * 117.00054 * 5.43450 * 15 14 13 17 17 C 1.53001 * 109.47268 * 154.97268 * 16 15 14 18 18 C 1.52995 * 109.47326 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46919 * 299.99491 * 18 17 16 20 20 C 1.53001 * 109.46706 * 60.00129 * 19 18 17 21 21 C 1.53000 * 109.46817 * 274.96836 * 16 15 14 22 22 C 1.39327 * 120.22850 * 0.25656 * 14 13 12 23 23 F 1.35103 * 119.82455 * 179.74400 * 22 14 13 24 24 C 1.38188 * 120.35220 * 359.48711 * 22 14 13 25 25 C 1.38821 * 120.10668 * 0.51180 * 24 22 14 26 26 N 1.39039 * 120.11682 * 179.76749 * 25 24 22 27 27 H 0.97001 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05786 * 359.97438 * 13 12 10 29 29 H 1.09000 * 109.47327 * 34.96929 * 16 15 14 30 30 H 1.09000 * 109.47223 * 59.99598 * 17 16 15 31 31 H 1.09003 * 109.47063 * 299.99660 * 17 16 15 32 32 H 1.09000 * 109.47463 * 59.99542 * 18 17 16 33 33 H 1.08997 * 109.47542 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.46979 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47095 * 300.00276 * 19 18 17 36 36 H 1.09003 * 109.47063 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47223 * 60.00226 * 20 19 18 38 38 H 1.08998 * 109.47623 * 299.99763 * 21 16 15 39 39 H 1.08999 * 109.47027 * 60.00610 * 21 16 15 40 40 H 1.07998 * 119.94866 * 180.25906 * 24 22 14 41 41 H 0.97004 * 120.00630 * 154.33810 * 26 25 24 42 42 H 0.97009 * 120.00457 * 334.33749 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4457 2.6528 0.7001 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2018 -0.0005 8 1 1.4684 -2.1371 -0.0014 9 8 3.3570 -1.2017 -0.0011 10 6 3.9690 -2.4029 -0.0010 11 8 3.3069 -3.4226 -0.0010 12 6 5.4381 -2.4799 -0.0010 13 6 6.2037 -1.3133 0.1102 14 6 7.5812 -1.3923 0.1090 15 8 8.3252 -0.2584 0.2165 16 6 7.6183 0.9620 0.4467 17 6 8.5434 1.9644 1.1398 18 6 7.7864 3.2708 1.3867 19 6 7.3179 3.8492 0.0500 20 6 6.3928 2.8469 -0.6431 21 6 7.1503 1.5401 -0.8903 22 6 8.2128 -2.6286 -0.0078 23 9 9.5622 -2.6960 -0.0132 24 6 7.4665 -3.7869 -0.1128 25 6 6.0797 -3.7241 -0.1132 26 7 5.3286 -4.8889 -0.2237 27 1 -0.4850 0.8400 0.0004 28 1 5.7170 -0.3530 0.1958 29 1 6.7535 0.7670 1.0809 30 1 9.4082 2.1594 0.5056 31 1 8.8769 1.5526 2.0923 32 1 6.9218 3.0755 2.0211 33 1 8.4453 3.9847 1.8809 34 1 6.7789 4.7802 0.2259 35 1 8.1824 4.0446 -0.5844 36 1 6.0593 3.2587 -1.5957 37 1 5.5282 2.6515 -0.0087 38 1 8.0150 1.7352 -1.5246 39 1 6.4912 0.8261 -1.3841 40 1 7.9629 -4.7422 -0.1988 41 1 4.4278 -4.9211 0.1347 42 1 5.7054 -5.6696 -0.6592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741034490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:56 Heat of formation + Delta-G solvation = -165.445946 kcal Electronic energy + Delta-G solvation = -28215.366829 eV Core-core repulsion = 24074.211905 eV Total energy + Delta-G solvation = -4141.154924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.96824 -41.79343 -40.96465 -39.49953 -37.99679 -37.19227 -34.84938 -34.46233 -32.32677 -31.77750 -30.99543 -29.14828 -27.69609 -25.26678 -24.14180 -23.62845 -22.78085 -21.93382 -20.86973 -20.22183 -19.51290 -18.85692 -18.51188 -18.02434 -17.14487 -17.02128 -16.79830 -16.60767 -16.37238 -15.99602 -15.96147 -15.68653 -15.31136 -14.96034 -14.78648 -14.55364 -14.26546 -14.19664 -13.89387 -13.82448 -13.52547 -13.22145 -13.15516 -12.91058 -12.70876 -12.46849 -12.38927 -12.08537 -11.98907 -11.84145 -11.49419 -11.35464 -11.33054 -11.07169 -10.87992 -10.64247 -10.05512 -8.58926 -8.48113 -6.42244 -0.48544 0.28211 1.27686 1.29260 1.47099 1.58276 2.03219 2.20923 2.31693 2.52720 2.77102 2.92791 3.18456 3.55454 3.64341 3.68935 3.83782 3.94334 4.14654 4.17116 4.21441 4.25829 4.44420 4.46303 4.50276 4.50897 4.64681 4.71282 4.80123 4.88837 4.97018 5.03856 5.07750 5.16903 5.17657 5.28911 5.32013 5.38447 5.45504 5.49787 5.83734 6.25889 6.32661 6.57229 6.76585 7.00149 7.52391 8.53248 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.006952 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.918767 B = 4026.935786 C = 7158.201537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.244 1.244 7 C -0.401 4.401 8 H 0.064 0.936 9 O -0.249 6.249 10 C 0.462 3.538 11 O -0.563 6.563 12 C -0.178 4.178 13 C -0.094 4.094 14 C 0.032 3.968 15 O -0.310 6.310 16 C 0.077 3.923 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.144 4.144 22 C 0.145 3.855 23 F -0.125 7.125 24 C -0.186 4.186 25 C 0.266 3.734 26 N -0.853 5.853 27 H 0.290 0.710 28 H 0.141 0.859 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.184 0.816 41 H 0.410 0.590 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.822 4.033 0.553 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.082 0.918 9 O -0.158 6.158 10 C 0.312 3.688 11 O -0.460 6.460 12 C -0.185 4.185 13 C -0.113 4.113 14 C -0.015 4.015 15 O -0.224 6.224 16 C 0.021 3.979 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.182 4.182 22 C 0.124 3.876 23 F -0.103 7.103 24 C -0.209 4.209 25 C 0.156 3.844 26 N -0.400 5.400 27 H 0.100 0.900 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.201 0.799 41 H 0.248 0.752 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 20.660 3.948 0.558 21.042 hybrid contribution -1.030 -0.129 -0.130 1.046 sum 19.630 3.819 0.428 20.003 Atomic orbital electron populations 1.69685 1.07428 1.30214 1.47748 1.25486 0.95918 1.02439 0.94297 0.85340 0.79556 0.76415 0.80152 1.18187 1.18851 1.16708 1.20353 0.77424 0.95987 1.53953 0.91821 1.83559 1.22218 1.31887 1.78107 1.21106 0.89020 0.81796 0.76854 1.90399 1.67433 1.36045 1.52149 1.18618 0.88256 0.94050 1.17583 1.21175 0.91926 0.98722 0.99514 1.18500 0.89421 0.86912 1.06709 1.86111 1.35026 1.13584 1.87727 1.22715 0.95812 0.82226 0.97123 1.21561 0.98157 0.93797 1.00810 1.21550 1.00346 0.95738 0.97733 1.21580 0.99534 0.97939 0.96450 1.21629 0.98388 0.94972 1.01573 1.22106 1.01154 0.97831 0.97107 1.16886 0.76984 0.91139 1.02611 1.91507 1.28229 1.97002 1.93610 1.20597 0.90590 0.98778 1.10938 1.17290 0.90283 0.85707 0.91136 1.42934 1.20000 1.11628 1.65459 0.90031 0.84123 0.92066 0.89869 0.90681 0.92375 0.88873 0.90598 0.90411 0.90716 0.93283 0.89620 0.92994 0.79867 0.75249 0.75738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.43 13.96 21.63 0.30 -54.13 16 2 C 0.02 1.10 5.50 84.88 0.47 1.57 16 3 Si 0.97 42.62 28.62 68.60 1.96 44.58 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.24 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.40 -24.43 10.11 67.95 0.69 -23.75 16 8 H 0.06 4.36 7.09 -2.91 -0.02 4.34 16 9 O -0.25 -13.36 7.83 10.45 0.08 -13.28 16 10 C 0.46 22.52 7.81 70.15 0.55 23.07 16 11 O -0.56 -29.27 12.99 19.59 0.25 -29.02 16 12 C -0.18 -6.81 5.89 -19.99 -0.12 -6.93 16 13 C -0.09 -3.25 7.80 22.63 0.18 -3.07 16 14 C 0.03 0.96 6.60 22.47 0.15 1.11 16 15 O -0.31 -8.84 9.66 -94.05 -0.91 -9.75 16 16 C 0.08 1.95 2.11 30.59 0.06 2.01 16 17 C -0.11 -2.01 5.57 30.59 0.17 -1.84 16 18 C -0.12 -1.90 5.92 30.59 0.18 -1.72 16 19 C -0.12 -1.97 5.92 30.60 0.18 -1.78 16 20 C -0.13 -2.89 5.92 30.61 0.18 -2.71 16 21 C -0.14 -3.56 5.19 30.61 0.16 -3.40 16 22 C 0.14 3.93 7.31 22.52 0.16 4.10 16 23 F -0.13 -3.27 17.10 44.97 0.77 -2.50 16 24 C -0.19 -4.53 9.89 22.40 0.22 -4.30 16 25 C 0.27 8.20 6.76 38.67 0.26 8.46 16 26 N -0.85 -23.95 8.57 -50.87 -0.44 -24.39 16 27 H 0.29 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.14 5.09 4.95 -2.91 -0.01 5.07 16 29 H 0.06 1.73 6.30 -2.39 -0.02 1.71 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.49 6.91 -2.39 -0.02 1.47 16 40 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.41 13.93 5.94 -92.71 -0.55 13.38 16 42 H 0.41 8.10 8.91 -92.70 -0.83 7.27 16 Total: -1.00 -69.63 348.10 5.23 -64.40 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -0.29 Total: 33.26 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 3.49 Total: -9.19 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -0.13 Total: -78.52 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.57 Total: -52.04 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.77 Total: -2.50 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.96 Total: 44.58 kcal Total: -69.63 5.23 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741034490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.042 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds