Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30909 * 123.03330 * 2 1 4 4 C 1.29393 * 117.46699 * 179.97438 * 3 2 1 5 5 C 1.50702 * 124.70703 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47504 * 89.99891 * 5 4 3 7 7 C 1.52995 * 109.46941 * 295.00157 * 6 5 4 8 8 C 1.53002 * 109.47124 * 174.99713 * 6 5 4 9 9 S 1.70922 * 110.58603 * 0.22949 * 4 3 2 10 10 C 1.36763 * 123.03049 * 179.97438 * 2 1 3 11 11 C 1.46493 * 126.17944 * 0.03625 * 10 2 1 12 12 O 1.21612 * 120.00562 * 5.63225 * 11 10 2 13 13 O 1.34882 * 119.99762 * 185.63672 * 11 10 2 14 14 C 1.45199 * 117.00122 * 185.17747 * 13 11 10 15 15 C 1.52994 * 109.47568 * 181.91502 * 14 13 11 16 16 C 1.50700 * 115.54820 * 306.15548 * 15 14 13 17 17 H 1.08008 * 119.99997 * 144.74989 * 16 15 14 18 18 C 1.37877 * 120.00056 * 324.74751 * 16 15 14 19 19 N 1.31513 * 120.00108 * 344.67389 * 18 16 15 20 20 Si 1.86806 * 119.99994 * 164.66922 * 18 16 15 21 21 H 1.48495 * 109.47289 * 90.00137 * 20 18 16 22 22 H 1.48499 * 109.47109 * 210.00389 * 20 18 16 23 23 H 1.48500 * 109.46843 * 330.00034 * 20 18 16 24 24 C 1.53003 * 117.50099 * 160.48418 * 15 14 13 25 25 C 1.52997 * 117.50049 * 91.82147 * 15 14 13 26 26 H 1.08994 * 109.47075 * 90.02642 * 1 2 3 27 27 H 1.09001 * 109.46676 * 210.02281 * 1 2 3 28 28 H 1.08998 * 109.46618 * 330.02237 * 1 2 3 29 29 H 1.08995 * 109.47080 * 329.99376 * 5 4 3 30 30 H 1.09007 * 109.46786 * 210.00071 * 5 4 3 31 31 H 1.09002 * 109.47036 * 55.00138 * 6 5 4 32 32 H 1.08993 * 109.47389 * 59.99959 * 7 6 5 33 33 H 1.08999 * 109.47041 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47240 * 299.99855 * 7 6 5 35 35 H 1.08998 * 109.46770 * 179.97438 * 8 6 5 36 36 H 1.08998 * 109.47371 * 299.99989 * 8 6 5 37 37 H 1.09002 * 109.46817 * 60.00291 * 8 6 5 38 38 H 1.09001 * 109.46894 * 301.92170 * 14 13 11 39 39 H 1.09010 * 109.47146 * 61.91274 * 14 13 11 40 40 H 0.97004 * 119.99911 * 185.05887 * 19 18 16 41 41 H 1.08990 * 117.49602 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49486 * 145.02417 * 24 15 14 43 43 H 1.09000 * 117.50062 * 214.98479 * 25 15 14 44 44 H 1.09003 * 117.49485 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2207 1.0975 0.0000 4 6 3.5085 0.9720 0.0005 5 6 4.4827 2.1218 0.0000 6 6 4.8119 2.5120 1.4423 7 6 3.5526 3.0487 2.1255 8 6 5.8936 3.5941 1.4437 9 16 3.9514 -0.6788 -0.0053 10 6 2.2525 -1.1466 0.0005 11 6 1.7326 -2.5161 0.0004 12 8 0.5369 -2.7127 -0.1036 13 8 2.5799 -3.5592 0.1157 14 6 2.0095 -4.8887 -0.0079 15 6 3.1064 -5.9354 0.1971 16 6 4.3206 -5.7853 -0.6828 17 1 5.2995 -6.0321 -0.2990 18 6 4.1818 -5.3330 -1.9779 19 7 2.9958 -5.3191 -2.5460 20 14 5.6784 -4.7399 -2.9255 21 1 6.2881 -5.8818 -3.6532 22 1 5.2667 -3.6961 -3.8982 23 1 6.6701 -4.1702 -1.9783 24 6 2.6686 -7.3557 0.5606 25 6 3.3237 -6.4623 1.6169 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3632 0.8902 0.5135 29 1 4.0388 2.9739 -0.5146 30 1 5.3968 1.8232 -0.5133 31 1 5.1731 1.6366 1.9821 32 1 2.7821 2.2778 2.1246 33 1 3.7873 3.3271 3.1529 34 1 3.1914 3.9241 1.5857 35 1 6.1278 3.8723 2.4712 36 1 6.7908 3.2116 0.9569 37 1 5.5324 4.4694 0.9039 38 1 1.2338 -5.0227 0.7461 39 1 1.5753 -5.0070 -1.0007 40 1 2.9081 -5.0709 -3.4797 41 1 1.5992 -7.5442 0.6542 42 1 3.2590 -8.1814 0.1637 43 1 4.3448 -6.7007 1.9145 44 1 2.6855 -6.0628 2.4051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = -34.376968 kcal Electronic energy + Delta-G solvation = -25264.514678 eV Core-core repulsion = 21695.256508 eV Total energy + Delta-G solvation = -3569.258171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20844 -39.18233 -36.88671 -36.49544 -35.08340 -32.19811 -31.96735 -28.71992 -28.46797 -27.34048 -26.39380 -25.32923 -23.15831 -22.00339 -21.22710 -20.39783 -19.25922 -18.99456 -17.94359 -16.67363 -16.41602 -15.75952 -15.67731 -15.07549 -14.91554 -14.64828 -14.51512 -13.93566 -13.76443 -13.50536 -13.13436 -12.79353 -12.50836 -12.42983 -12.35283 -12.10408 -12.03378 -11.96657 -11.66855 -11.32558 -11.15626 -11.11824 -10.98885 -10.94710 -10.88097 -10.53129 -10.37583 -10.04487 -9.70783 -9.58638 -9.43402 -9.33265 -9.19630 -8.78887 -8.59585 -8.13133 -6.11521 -4.11236 0.31500 1.31941 1.79887 2.51068 3.23222 3.29270 3.32084 3.36039 3.43318 3.93974 4.33250 4.57991 4.64111 4.69590 4.91936 5.07828 5.10491 5.29087 5.35151 5.40855 5.45464 5.54533 5.61044 5.66070 5.70558 5.77258 5.85283 5.91153 5.94711 5.99283 6.06999 6.15566 6.17023 6.36759 6.42940 6.56237 6.61903 6.75355 6.92678 7.22340 7.32003 7.38986 7.69390 7.84997 8.29689 8.46890 8.82196 9.47275 10.91982 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.004130 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.312374 B = 6778.472614 C = 7618.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.144 3.856 3 N -0.476 5.476 4 C 0.041 3.959 5 C -0.042 4.042 6 C -0.092 4.092 7 C -0.146 4.146 8 C -0.146 4.146 9 S 0.227 5.773 10 C -0.280 4.280 11 C 0.537 3.463 12 O -0.509 6.509 13 O -0.321 6.321 14 C 0.117 3.883 15 C 0.048 3.952 16 C -0.486 4.486 17 H 0.063 0.937 18 C 0.078 3.922 19 N -0.880 5.880 20 Si 0.885 3.115 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.268 1.268 24 C -0.191 4.191 25 C -0.209 4.209 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.032 0.968 39 H 0.111 0.889 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 15.519 6.100 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.005 3.995 3 N -0.191 5.191 4 C -0.233 4.233 5 C -0.083 4.083 6 C -0.112 4.112 7 C -0.204 4.204 8 C -0.203 4.203 9 S 0.487 5.513 10 C -0.402 4.402 11 C 0.380 3.620 12 O -0.402 6.402 13 O -0.235 6.235 14 C 0.044 3.956 15 C 0.048 3.952 16 C -0.523 4.523 17 H 0.081 0.919 18 C -0.125 4.125 19 N -0.517 5.517 20 Si 0.712 3.288 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.193 1.193 24 C -0.229 4.229 25 C -0.246 4.246 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.377 15.505 5.903 16.760 hybrid contribution -0.289 0.031 -0.629 0.693 sum 2.088 15.536 5.274 16.539 Atomic orbital electron populations 1.20586 0.86062 1.03999 1.03700 1.20918 0.98404 0.84664 0.95531 1.66050 1.04436 1.31021 1.17574 1.27437 0.94575 0.99787 1.01496 1.20456 0.95513 0.93809 0.98497 1.21139 0.96561 0.99200 0.94277 1.21840 0.97169 1.01593 0.99762 1.21826 0.98015 0.98338 1.02124 1.84408 1.04735 0.98874 1.63316 1.24928 0.96925 0.96655 1.21708 1.19283 0.84658 0.84452 0.73602 1.90772 1.16325 1.85948 1.47112 1.86597 1.40095 1.16196 1.80639 1.22845 0.94247 0.75695 1.02826 1.18854 0.95492 0.89032 0.91828 1.20380 0.91404 1.44127 0.96352 0.91879 1.24901 0.95826 0.94405 0.97410 1.69822 1.22608 1.47174 1.12078 0.86675 0.83263 0.79057 0.79758 1.20552 1.20917 1.19305 1.22967 0.98163 0.96908 1.04814 1.22971 1.00256 1.07770 0.93647 0.90053 0.88627 0.90872 0.88599 0.89330 0.90749 0.92100 0.92889 0.92433 0.92271 0.92388 0.92408 0.95004 0.87102 0.92649 0.91459 0.89710 0.90261 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.65 36.01 0.35 -0.88 16 2 C 0.14 2.40 6.83 -83.52 -0.57 1.83 16 3 N -0.48 -7.18 9.72 -7.47 -0.07 -7.26 16 4 C 0.04 0.55 5.87 -13.30 -0.08 0.47 16 5 C -0.04 -0.41 5.26 -27.88 -0.15 -0.56 16 6 C -0.09 -0.80 2.91 -90.62 -0.26 -1.06 16 7 C -0.15 -1.37 8.99 37.15 0.33 -1.04 16 8 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 9 S 0.23 3.61 23.04 -107.50 -2.48 1.14 16 10 C -0.28 -5.23 6.52 -36.79 -0.24 -5.47 16 11 C 0.54 11.77 7.90 34.06 0.27 12.04 16 12 O -0.51 -11.54 14.16 -19.35 -0.27 -11.81 16 13 O -0.32 -7.70 9.78 -40.99 -0.40 -8.10 16 14 C 0.12 2.87 4.65 37.15 0.17 3.04 16 15 C 0.05 1.20 2.10 -155.66 -0.33 0.87 16 16 C -0.49 -13.03 8.75 -34.44 -0.30 -13.33 16 17 H 0.06 1.68 7.86 -52.48 -0.41 1.27 16 18 C 0.08 2.09 5.12 -17.82 -0.09 2.00 16 19 N -0.88 -24.32 10.98 55.43 0.61 -23.71 16 20 Si 0.89 20.69 29.57 -169.99 -5.03 15.67 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 C -0.19 -4.23 9.96 -26.69 -0.27 -4.50 16 25 C -0.21 -4.50 9.92 -26.69 -0.26 -4.77 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.10 1.50 6.20 -51.93 -0.32 1.18 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.70 6.79 -51.93 -0.35 0.35 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.03 0.73 8.00 -51.93 -0.42 0.32 16 39 H 0.11 3.00 6.12 -51.92 -0.32 2.68 16 40 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -29.27 379.48 -9.88 -39.15 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.87 Total: 1.21 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.08 Total: -12.00 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.54 Total: -30.97 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.67 Total: -19.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.48 Total: 1.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.27 -9.88 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.771 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds