Wall clock time and date at job start Tue Mar 31 2020 14:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30909 * 123.03330 * 2 1 4 4 C 1.29393 * 117.46699 * 179.97438 * 3 2 1 5 5 C 1.50702 * 124.70703 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47504 * 89.99891 * 5 4 3 7 7 C 1.52995 * 109.46941 * 295.00157 * 6 5 4 8 8 C 1.53002 * 109.47124 * 174.99713 * 6 5 4 9 9 S 1.70922 * 110.58603 * 0.22949 * 4 3 2 10 10 C 1.36763 * 123.03049 * 179.97438 * 2 1 3 11 11 C 1.46493 * 126.17944 * 0.03625 * 10 2 1 12 12 O 1.21612 * 120.00562 * 5.63225 * 11 10 2 13 13 O 1.34882 * 119.99762 * 185.63672 * 11 10 2 14 14 C 1.45199 * 117.00122 * 185.17747 * 13 11 10 15 15 C 1.52994 * 109.47568 * 181.91502 * 14 13 11 16 16 C 1.50700 * 115.54820 * 306.15548 * 15 14 13 17 17 H 1.08008 * 119.99997 * 144.74989 * 16 15 14 18 18 C 1.37877 * 120.00056 * 324.74751 * 16 15 14 19 19 N 1.31513 * 120.00108 * 344.67389 * 18 16 15 20 20 Si 1.86806 * 119.99994 * 164.66922 * 18 16 15 21 21 H 1.48495 * 109.47289 * 90.00137 * 20 18 16 22 22 H 1.48499 * 109.47109 * 210.00389 * 20 18 16 23 23 H 1.48500 * 109.46843 * 330.00034 * 20 18 16 24 24 C 1.53003 * 117.50099 * 160.48418 * 15 14 13 25 25 C 1.52997 * 117.50049 * 91.82147 * 15 14 13 26 26 H 1.08994 * 109.47075 * 90.02642 * 1 2 3 27 27 H 1.09001 * 109.46676 * 210.02281 * 1 2 3 28 28 H 1.08998 * 109.46618 * 330.02237 * 1 2 3 29 29 H 1.08995 * 109.47080 * 329.99376 * 5 4 3 30 30 H 1.09007 * 109.46786 * 210.00071 * 5 4 3 31 31 H 1.09002 * 109.47036 * 55.00138 * 6 5 4 32 32 H 1.08993 * 109.47389 * 59.99959 * 7 6 5 33 33 H 1.08999 * 109.47041 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47240 * 299.99855 * 7 6 5 35 35 H 1.08998 * 109.46770 * 179.97438 * 8 6 5 36 36 H 1.08998 * 109.47371 * 299.99989 * 8 6 5 37 37 H 1.09002 * 109.46817 * 60.00291 * 8 6 5 38 38 H 1.09001 * 109.46894 * 301.92170 * 14 13 11 39 39 H 1.09010 * 109.47146 * 61.91274 * 14 13 11 40 40 H 0.97004 * 119.99911 * 185.05887 * 19 18 16 41 41 H 1.08990 * 117.49602 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49486 * 145.02417 * 24 15 14 43 43 H 1.09000 * 117.50062 * 214.98479 * 25 15 14 44 44 H 1.09003 * 117.49485 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2207 1.0975 0.0000 4 6 3.5085 0.9720 0.0005 5 6 4.4827 2.1218 0.0000 6 6 4.8119 2.5120 1.4423 7 6 3.5526 3.0487 2.1255 8 6 5.8936 3.5941 1.4437 9 16 3.9514 -0.6788 -0.0053 10 6 2.2525 -1.1466 0.0005 11 6 1.7326 -2.5161 0.0004 12 8 0.5369 -2.7127 -0.1036 13 8 2.5799 -3.5592 0.1157 14 6 2.0095 -4.8887 -0.0079 15 6 3.1064 -5.9354 0.1971 16 6 4.3206 -5.7853 -0.6828 17 1 5.2995 -6.0321 -0.2990 18 6 4.1818 -5.3330 -1.9779 19 7 2.9958 -5.3191 -2.5460 20 14 5.6784 -4.7399 -2.9255 21 1 6.2881 -5.8818 -3.6532 22 1 5.2667 -3.6961 -3.8982 23 1 6.6701 -4.1702 -1.9783 24 6 2.6686 -7.3557 0.5606 25 6 3.3237 -6.4623 1.6169 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3632 0.8902 0.5135 29 1 4.0388 2.9739 -0.5146 30 1 5.3968 1.8232 -0.5133 31 1 5.1731 1.6366 1.9821 32 1 2.7821 2.2778 2.1246 33 1 3.7873 3.3271 3.1529 34 1 3.1914 3.9241 1.5857 35 1 6.1278 3.8723 2.4712 36 1 6.7908 3.2116 0.9569 37 1 5.5324 4.4694 0.9039 38 1 1.2338 -5.0227 0.7461 39 1 1.5753 -5.0070 -1.0007 40 1 2.9081 -5.0709 -3.4797 41 1 1.5992 -7.5442 0.6542 42 1 3.2590 -8.1814 0.1637 43 1 4.3448 -6.7007 1.9145 44 1 2.6855 -6.0628 2.4051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:45 Heat of formation + Delta-G solvation = -47.974640 kcal Electronic energy + Delta-G solvation = -25265.104318 eV Core-core repulsion = 21695.256508 eV Total energy + Delta-G solvation = -3569.847810 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62059 -40.72203 -38.58862 -37.41813 -36.83474 -34.20917 -33.12898 -30.15154 -29.40613 -28.19322 -27.95937 -27.30495 -24.23782 -23.53636 -22.96679 -21.16490 -21.12843 -20.46594 -19.31714 -18.47498 -17.90955 -17.38400 -17.25683 -16.62111 -16.17904 -15.93106 -15.62672 -15.50755 -14.96967 -14.74870 -14.63014 -13.98225 -13.91956 -13.69934 -13.53142 -13.49126 -13.34765 -13.04329 -12.86457 -12.81989 -12.71633 -12.45860 -12.34718 -12.15687 -12.07559 -11.83147 -11.74442 -11.61923 -11.47074 -11.32075 -11.15339 -10.82978 -10.67087 -10.62391 -10.06878 -9.84780 -8.12713 -6.18111 -0.98285 0.06266 0.54064 1.15367 1.37323 1.41346 1.51111 1.72651 1.84651 2.39680 2.83430 2.99201 3.54143 3.67218 3.73759 3.88770 3.96322 3.99584 4.16881 4.27406 4.33971 4.54429 4.56605 4.62703 4.63588 4.67154 4.71323 4.80294 4.84678 4.89521 4.89653 4.93889 5.03855 5.09240 5.14794 5.21656 5.27402 5.35069 5.44747 5.47212 5.49888 5.63307 5.79026 6.31600 6.43853 6.69554 6.81519 7.42420 8.89279 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013360 B = 0.004130 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.312374 B = 6778.472614 C = 7618.885001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.160 3.840 3 N -0.484 5.484 4 C 0.076 3.924 5 C -0.046 4.046 6 C -0.089 4.089 7 C -0.146 4.146 8 C -0.141 4.141 9 S 0.212 5.788 10 C -0.327 4.327 11 C 0.532 3.468 12 O -0.529 6.529 13 O -0.335 6.335 14 C 0.127 3.873 15 C 0.010 3.990 16 C -0.501 4.501 17 H 0.058 0.942 18 C 0.037 3.963 19 N -0.905 5.905 20 Si 0.935 3.065 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.183 4.183 25 C -0.187 4.187 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 17.711 6.661 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.019 3.981 3 N -0.199 5.199 4 C -0.198 4.198 5 C -0.086 4.086 6 C -0.109 4.109 7 C -0.203 4.203 8 C -0.198 4.198 9 S 0.472 5.528 10 C -0.449 4.449 11 C 0.378 3.622 12 O -0.423 6.423 13 O -0.250 6.250 14 C 0.053 3.947 15 C 0.009 3.991 16 C -0.538 4.538 17 H 0.076 0.924 18 C -0.163 4.163 19 N -0.543 5.543 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.184 1.184 24 C -0.221 4.221 25 C -0.224 4.224 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.773 17.684 6.477 19.207 hybrid contribution -0.723 -0.528 -0.747 1.166 sum 3.050 17.156 5.730 18.343 Atomic orbital electron populations 1.20629 0.84963 1.04503 1.04156 1.21293 0.99347 0.84434 0.93000 1.66194 1.04923 1.29882 1.18887 1.28226 0.94682 0.99567 0.97302 1.20797 0.95408 0.92634 0.99812 1.21147 0.96953 0.99767 0.93065 1.21838 0.96746 1.01011 1.00715 1.21792 0.97424 0.97772 1.02847 1.84356 1.03493 1.00704 1.64214 1.24749 0.98702 0.95384 1.26037 1.19753 0.84459 0.85173 0.72842 1.90738 1.16905 1.86414 1.48199 1.86589 1.40853 1.16374 1.81192 1.22566 0.94399 0.76467 1.01230 1.18986 0.95573 0.90454 0.94048 1.20617 0.91921 1.44330 0.96933 0.92414 1.25524 0.98046 0.94509 0.98258 1.69959 1.24178 1.48146 1.12026 0.85885 0.80687 0.78688 0.78719 1.19837 1.21002 1.18389 1.22964 0.99105 0.95518 1.04516 1.22989 1.00962 1.05844 0.92579 0.89447 0.90131 0.88257 0.87016 0.87158 0.91354 0.94573 0.91928 0.91767 0.91687 0.91567 0.91530 0.94292 0.90152 0.93016 0.90079 0.89886 0.89527 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.40 9.65 71.24 0.69 -1.71 16 2 C 0.16 5.25 6.83 42.35 0.29 5.54 16 3 N -0.48 -13.90 9.72 -177.55 -1.73 -15.63 16 4 C 0.08 1.92 5.87 88.47 0.52 2.44 16 5 C -0.05 -0.75 5.26 29.85 0.16 -0.60 16 6 C -0.09 -1.31 2.91 -10.80 -0.03 -1.34 16 7 C -0.15 -2.40 8.99 71.98 0.65 -1.75 16 8 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 9 S 0.21 6.66 23.04 -56.49 -1.30 5.36 16 10 C -0.33 -12.40 6.52 24.08 0.16 -12.25 16 11 C 0.53 24.16 7.90 69.97 0.55 24.71 16 12 O -0.53 -24.92 14.16 19.47 0.28 -24.65 16 13 O -0.34 -16.58 9.78 -57.96 -0.57 -17.15 16 14 C 0.13 6.39 4.65 71.98 0.33 6.73 16 15 C 0.01 0.49 2.10 -52.93 -0.11 0.38 16 16 C -0.50 -27.15 8.75 25.60 0.22 -26.92 16 17 H 0.06 3.09 7.86 -2.91 -0.02 3.07 16 18 C 0.04 2.02 5.12 84.65 0.43 2.46 16 19 N -0.91 -51.35 10.98 21.45 0.24 -51.12 16 20 Si 0.94 42.56 29.57 68.60 2.03 44.59 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 C -0.18 -8.03 9.96 30.62 0.30 -7.73 16 25 C -0.19 -7.83 9.92 30.62 0.30 -7.53 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 27 H 0.08 2.58 6.20 -2.39 -0.01 2.56 16 28 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.77 6.79 -2.39 -0.02 0.75 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.04 1.84 8.00 -2.39 -0.02 1.82 16 39 H 0.08 4.54 6.12 -2.38 -0.01 4.52 16 40 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -63.99 379.48 5.07 -58.92 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.99 Total: 17.99 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 5.13 Total: -18.32 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.49 Total: -66.74 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.29 Total: -41.80 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -1.30 Total: 5.36 kcal Total: -63.99 5.07 -58.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.949 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds