Wall clock time and date at job start Tue Mar 31 2020 14:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30914 * 123.03140 * 2 1 4 4 C 1.29390 * 117.46692 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.70575 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47501 * 59.99796 * 5 4 3 7 7 C 1.53001 * 109.47307 * 179.97438 * 5 4 3 8 8 C 1.53003 * 109.47389 * 299.99701 * 5 4 3 9 9 S 1.70921 * 110.58711 * 359.74459 * 4 3 2 10 10 C 1.36752 * 123.03521 * 180.02562 * 2 1 3 11 11 C 1.46501 * 126.18020 * 359.95873 * 10 2 1 12 12 O 1.21612 * 119.99960 * 359.97438 * 11 10 2 13 13 O 1.34880 * 120.00130 * 180.02562 * 11 10 2 14 14 C 1.45201 * 116.99859 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46574 * 184.74568 * 14 13 11 16 16 C 1.50697 * 115.55145 * 301.69946 * 15 14 13 17 17 H 1.08009 * 119.99642 * 95.22050 * 16 15 14 18 18 C 1.37875 * 120.00534 * 275.22070 * 16 15 14 19 19 N 1.31511 * 119.99899 * 7.12770 * 18 16 15 20 20 Si 1.86799 * 120.00145 * 187.12591 * 18 16 15 21 21 H 1.48505 * 109.46940 * 270.00004 * 20 18 16 22 22 H 1.48505 * 109.46956 * 29.99979 * 20 18 16 23 23 H 1.48499 * 109.47304 * 149.99627 * 20 18 16 24 24 C 1.52996 * 117.50037 * 87.37877 * 15 14 13 25 25 C 1.53005 * 117.49471 * 156.04036 * 15 14 13 26 26 H 1.09002 * 109.47142 * 269.97377 * 1 2 3 27 27 H 1.08999 * 109.47452 * 29.97948 * 1 2 3 28 28 H 1.09007 * 109.46815 * 149.97674 * 1 2 3 29 29 H 1.08996 * 109.46964 * 59.99511 * 6 5 4 30 30 H 1.08994 * 109.47428 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46337 * 300.00102 * 6 5 4 32 32 H 1.08997 * 109.46877 * 59.99816 * 7 5 4 33 33 H 1.08996 * 109.47502 * 180.02562 * 7 5 4 34 34 H 1.09005 * 109.46818 * 299.99964 * 7 5 4 35 35 H 1.08997 * 109.46946 * 60.00146 * 8 5 4 36 36 H 1.08994 * 109.47569 * 179.97438 * 8 5 4 37 37 H 1.08997 * 109.47103 * 300.00373 * 8 5 4 38 38 H 1.08995 * 109.47036 * 64.74702 * 14 13 11 39 39 H 1.09003 * 109.47139 * 304.74012 * 14 13 11 40 40 H 0.97007 * 119.99922 * 355.38364 * 19 18 16 41 41 H 1.08998 * 117.49704 * 215.00110 * 24 15 14 42 42 H 1.09006 * 117.49976 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.49814 * 359.96985 * 25 15 14 44 44 H 1.08998 * 117.49749 * 144.97687 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2206 1.0975 0.0000 4 6 3.5084 0.9721 -0.0005 5 6 4.4825 2.1219 -0.0012 6 6 4.2624 2.9776 1.2480 7 6 5.9128 1.5787 -0.0010 8 6 4.2614 2.9770 -1.2505 9 16 3.9515 -0.6787 0.0061 10 6 2.2525 -1.1464 -0.0005 11 6 1.7327 -2.5161 -0.0003 12 8 0.5322 -2.7109 0.0009 13 8 2.5854 -3.5611 -0.0003 14 6 1.9997 -4.8898 0.0005 15 6 3.1096 -5.9362 0.1197 16 6 4.1569 -5.8991 -0.9633 17 1 5.0778 -5.3571 -0.8056 18 6 3.9396 -6.5568 -2.1554 19 7 2.7668 -7.0975 -2.4038 20 14 5.3111 -6.6801 -3.4177 21 1 5.2455 -5.5142 -4.3352 22 1 6.6236 -6.6901 -2.7231 23 1 5.1544 -7.9337 -4.1981 24 6 3.5627 -6.3283 1.5274 25 6 2.7320 -7.3046 0.6906 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.4199 2.3685 2.1380 30 1 4.9666 3.8095 1.2473 31 1 3.2434 3.3646 1.2482 32 1 6.0699 0.9689 -0.8907 33 1 6.6174 2.4103 -0.0010 34 1 6.0701 0.9697 0.8893 35 1 3.2425 3.3641 -1.2502 36 1 4.9656 3.8089 -1.2508 37 1 4.4182 2.3675 -2.1404 38 1 1.4515 -5.0458 -0.9286 39 1 1.3177 -4.9857 0.8454 40 1 2.0762 -7.0922 -1.7226 41 1 4.6183 -6.5594 1.6703 42 1 3.0697 -5.8412 2.3688 43 1 1.6931 -7.4591 0.9817 44 1 3.2410 -8.1779 0.2827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:47 Heat of formation + Delta-G solvation = -55.602360 kcal Electronic energy + Delta-G solvation = -25167.417544 eV Core-core repulsion = 21597.238971 eV Total energy + Delta-G solvation = -3570.178573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77443 -40.93584 -38.91733 -37.84501 -37.10260 -34.01548 -32.56667 -30.29280 -28.41311 -28.32841 -28.19303 -26.94159 -26.12693 -23.70736 -23.10658 -21.55590 -21.17229 -20.41035 -19.24760 -18.70924 -17.94403 -17.56448 -17.44080 -16.30622 -16.18904 -15.75335 -15.62840 -15.11012 -15.07340 -14.86556 -14.64695 -14.51521 -14.04344 -13.86791 -13.77324 -13.62756 -13.16507 -13.00173 -12.89937 -12.69208 -12.62129 -12.57405 -12.36795 -12.30818 -12.00771 -11.97197 -11.94770 -11.90479 -11.75860 -11.48575 -10.83613 -10.67080 -10.56054 -10.48000 -10.40224 -9.90918 -8.58172 -6.31497 -1.04169 0.02959 0.51150 1.06601 1.51530 1.53305 1.60654 1.71634 1.78527 2.56314 2.72160 3.15771 3.18060 3.53904 3.60375 3.83816 3.89914 3.90119 3.92229 4.14279 4.20032 4.23633 4.39543 4.54455 4.55911 4.60441 4.67544 4.72929 4.75811 4.76788 4.84439 4.93485 4.95011 4.95229 5.01280 5.06995 5.17908 5.22842 5.35101 5.36313 5.37482 5.44799 6.10758 6.20255 6.40424 6.53012 6.66751 7.48880 8.82077 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.003772 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.035919 B = 7420.985913 C = 8339.197069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.165 3.835 3 N -0.487 5.487 4 C 0.079 3.921 5 C 0.004 3.996 6 C -0.131 4.131 7 C -0.160 4.160 8 C -0.132 4.132 9 S 0.232 5.768 10 C -0.340 4.340 11 C 0.534 3.466 12 O -0.526 6.526 13 O -0.339 6.339 14 C 0.125 3.875 15 C -0.022 4.022 16 C -0.572 4.572 17 H 0.045 0.955 18 C -0.020 4.020 19 N -0.931 5.931 20 Si 1.109 2.891 21 H -0.280 1.280 22 H -0.268 1.268 23 H -0.283 1.283 24 C -0.166 4.166 25 C -0.162 4.162 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.264 0.736 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 20.997 6.542 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.024 3.976 3 N -0.202 5.202 4 C -0.194 4.194 5 C 0.001 3.999 6 C -0.189 4.189 7 C -0.218 4.218 8 C -0.191 4.191 9 S 0.494 5.506 10 C -0.462 4.462 11 C 0.380 3.620 12 O -0.419 6.419 13 O -0.255 6.255 14 C 0.051 3.949 15 C -0.022 4.022 16 C -0.609 4.609 17 H 0.063 0.937 18 C -0.219 4.219 19 N -0.568 5.568 20 Si 0.932 3.068 21 H -0.206 1.206 22 H -0.193 1.193 23 H -0.208 1.208 24 C -0.203 4.203 25 C -0.199 4.199 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.591 20.279 5.041 21.631 hybrid contribution -1.969 -0.210 1.397 2.423 sum 3.622 20.069 6.438 21.385 Atomic orbital electron populations 1.20682 0.85019 1.04541 1.04419 1.21287 0.99329 0.84383 0.92573 1.66078 1.05009 1.29982 1.19120 1.28447 0.94648 0.99421 0.96924 1.19644 0.91161 0.89593 0.99550 1.21854 1.03240 0.99532 0.94323 1.22133 0.93718 1.03104 1.02866 1.21863 1.03254 0.99573 0.94423 1.84263 1.02396 1.00173 1.63769 1.24765 0.99685 0.94922 1.26804 1.19826 0.84485 0.85092 0.72641 1.90759 1.16540 1.86358 1.48208 1.86644 1.39853 1.16008 1.82996 1.22647 0.95308 0.77678 0.99276 1.19135 0.96464 0.92019 0.94614 1.21447 1.02839 1.35249 1.01405 0.93660 1.27078 1.01460 0.92807 1.00591 1.70839 1.04223 1.45534 1.36172 0.83035 0.72999 0.76997 0.73784 1.20584 1.19291 1.20814 1.22948 0.99758 1.03633 0.93975 1.22741 0.99320 0.93546 1.04327 0.88811 0.88466 0.90209 0.92694 0.88607 0.92343 0.92025 0.87587 0.91710 0.92327 0.88554 0.93007 0.94356 0.92330 0.92584 0.89387 0.88857 0.89366 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 9.72 71.24 0.69 -1.68 16 2 C 0.17 5.13 6.83 42.35 0.29 5.42 16 3 N -0.49 -13.36 10.47 -177.57 -1.86 -15.22 16 4 C 0.08 1.90 5.77 88.47 0.51 2.41 16 5 C 0.00 0.07 0.99 -52.93 -0.05 0.02 16 6 C -0.13 -1.70 8.45 71.98 0.61 -1.09 16 7 C -0.16 -2.04 7.53 71.98 0.54 -1.50 16 8 C -0.13 -1.84 8.45 71.98 0.61 -1.23 16 9 S 0.23 6.66 21.40 -56.49 -1.21 5.45 16 10 C -0.34 -12.05 6.52 24.08 0.16 -11.89 16 11 C 0.53 22.70 7.92 69.98 0.55 23.25 16 12 O -0.53 -23.30 14.06 19.47 0.27 -23.03 16 13 O -0.34 -15.92 9.93 -57.94 -0.58 -16.49 16 14 C 0.12 6.04 5.31 71.98 0.38 6.43 16 15 C -0.02 -1.08 1.20 -52.93 -0.06 -1.15 16 16 C -0.57 -31.80 8.64 25.60 0.22 -31.58 16 17 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 18 C -0.02 -1.11 5.39 84.65 0.46 -0.65 16 19 N -0.93 -55.65 13.57 21.45 0.29 -55.36 16 20 Si 1.11 50.00 29.91 68.60 2.05 52.05 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 C -0.17 -6.97 9.94 30.62 0.30 -6.67 16 25 C -0.16 -7.27 8.75 30.62 0.27 -7.00 16 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.50 6.06 -2.38 -0.01 2.48 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.88 7.92 -2.39 -0.02 0.86 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.86 7.91 -2.38 -0.02 0.84 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.04 2.05 7.76 -2.39 -0.02 2.03 16 39 H 0.06 2.60 8.01 -2.39 -0.02 2.58 16 40 H 0.26 15.75 6.15 -92.70 -0.57 15.18 16 41 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 42 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 43 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 44 H 0.07 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -68.32 379.55 5.64 -62.68 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.19 Total: 16.84 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 5.48 Total: -26.92 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.57 Total: -70.58 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.30 Total: -39.52 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Atomic # 16 Polarization: 6.66 SS G_CDS: -1.21 Total: 5.45 kcal Total: -68.32 5.64 -62.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.078 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds