Wall clock time and date at job start Tue Mar 31 2020 14:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38345 * 119.91313 * 2 1 4 4 C 1.38556 * 120.27840 * 180.02562 * 3 2 1 5 5 F 1.35106 * 119.94917 * 179.97438 * 4 3 2 6 6 C 1.38192 * 120.09816 * 0.02562 * 4 3 2 7 7 C 1.39587 * 119.82175 * 359.97438 * 6 4 3 8 8 C 1.47730 * 120.13538 * 180.27691 * 7 6 4 9 9 O 1.21476 * 119.99465 * 179.72616 * 8 7 6 10 10 O 1.34709 * 120.00349 * 359.72270 * 8 7 6 11 11 C 1.45201 * 116.99874 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47453 * 29.99920 * 11 10 8 13 13 C 1.52997 * 109.46869 * 270.00000 * 11 10 8 14 14 C 1.50698 * 109.46902 * 149.99793 * 11 10 8 15 15 O 1.21275 * 120.00477 * 8.56735 * 14 11 10 16 16 N 1.34776 * 119.99649 * 188.56291 * 14 11 10 17 17 C 1.46497 * 120.00312 * 4.59083 * 16 14 11 18 18 C 1.46505 * 120.00067 * 184.58289 * 16 14 11 19 19 C 1.50709 * 109.46814 * 90.00188 * 18 16 14 20 20 H 1.07997 * 120.00155 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99760 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00233 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99680 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47372 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47417 * 120.00159 * 23 21 19 26 26 H 1.48505 * 109.47050 * 239.99625 * 23 21 19 27 27 C 1.37933 * 119.90494 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47216 * 269.97713 * 1 2 3 29 29 H 1.08997 * 109.46639 * 29.97753 * 1 2 3 30 30 H 1.09004 * 109.47192 * 149.97548 * 1 2 3 31 31 H 1.08001 * 119.85860 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.08960 * 180.02562 * 6 4 3 33 33 H 1.08992 * 109.47468 * 67.15603 * 13 11 10 34 34 H 1.09008 * 109.47160 * 187.15401 * 13 11 10 35 35 H 1.08998 * 109.47579 * 307.14980 * 13 11 10 36 36 H 1.08997 * 109.47448 * 86.11846 * 17 16 14 37 37 H 1.09011 * 109.47222 * 206.11592 * 17 16 14 38 38 H 1.08996 * 109.47241 * 326.11253 * 17 16 14 39 39 H 1.08996 * 109.47354 * 210.00242 * 18 16 14 40 40 H 1.09004 * 109.46933 * 330.00838 * 18 16 14 41 41 H 0.97001 * 119.99939 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.05452 * 359.95917 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1991 0.0000 4 6 3.5825 1.2080 -0.0005 5 9 4.2495 2.3829 -0.0011 6 6 4.2831 0.0168 -0.0016 7 6 3.5912 -1.1955 -0.0016 8 6 4.3332 -2.4729 0.0034 9 8 3.7285 -3.5264 0.0084 10 8 5.6803 -2.4695 0.0024 11 6 6.3427 -3.7616 0.0070 12 1 5.7162 -4.4930 -0.5035 13 6 6.5765 -4.2096 1.4510 14 6 7.6663 -3.6499 -0.7050 15 8 8.0885 -2.5615 -1.0331 16 7 8.3808 -4.7599 -0.9769 17 6 7.8264 -6.0811 -0.6717 18 6 9.7119 -4.6452 -1.5780 19 6 10.7486 -4.5499 -0.4883 20 1 10.4462 -4.5729 0.5482 21 6 12.0831 -4.4333 -0.8147 22 7 12.4514 -4.4057 -2.0769 23 14 13.3681 -4.3158 0.5360 24 1 12.6999 -4.3700 1.8611 25 1 14.3194 -5.4495 0.4142 26 1 14.1066 -3.0340 0.4066 27 6 2.1948 -1.1957 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6532 2.1323 0.0004 32 1 5.3631 0.0239 -0.0016 33 1 5.6178 -4.4129 1.9281 34 1 7.1843 -5.1145 1.4569 35 1 7.0941 -3.4209 1.9970 36 1 7.2125 -6.4192 -1.5064 37 1 8.6402 -6.7880 -0.5095 38 1 7.2142 -6.0192 0.2280 39 1 9.9101 -5.5235 -2.1923 40 1 9.7542 -3.7503 -2.1990 41 1 13.3902 -4.3233 -2.3065 42 1 1.6541 -2.1306 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745566455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:25 Heat of formation + Delta-G solvation = -135.073973 kcal Electronic energy + Delta-G solvation = -26776.198372 eV Core-core repulsion = 22636.360475 eV Total energy + Delta-G solvation = -4139.837897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.15755 -40.89630 -39.49639 -38.68894 -36.44200 -34.94164 -33.48195 -32.83780 -31.66177 -31.04793 -27.76785 -27.52121 -26.21623 -25.37332 -24.05542 -22.45248 -22.27302 -20.75890 -18.93588 -18.28386 -17.37371 -16.64555 -16.56248 -16.52981 -16.40260 -16.11312 -15.79600 -15.69244 -15.11526 -14.68218 -14.34722 -14.05427 -13.82471 -13.74306 -13.68820 -13.17263 -12.90409 -12.57384 -12.50679 -12.25169 -12.16451 -12.09620 -12.05987 -11.83651 -11.65822 -11.37465 -11.23277 -10.90308 -10.77656 -10.70895 -10.59280 -10.19379 -9.65807 -9.42527 -9.06823 -8.94861 -8.47580 -7.74554 -6.08225 -4.13520 0.23119 0.76280 2.21419 2.32928 3.20118 3.26245 3.27811 3.35886 3.39683 3.73077 3.87793 4.20013 4.37687 4.41430 4.63922 4.69295 4.78464 4.82844 4.94384 5.00650 5.07163 5.16351 5.20403 5.26575 5.42892 5.44014 5.61553 5.63280 5.65429 5.71685 5.84706 5.85824 5.94187 6.04798 6.25045 6.30360 6.40301 6.96035 7.37607 7.43932 7.58022 7.87774 8.17272 8.26359 8.81241 8.96310 9.51763 10.99963 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002732 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.107638 B =10244.698571 C =11131.430926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.123 4.123 4 C 0.094 3.906 5 F -0.132 7.132 6 C -0.099 4.099 7 C -0.088 4.088 8 C 0.509 3.491 9 O -0.503 6.503 10 O -0.319 6.319 11 C 0.072 3.928 12 H 0.105 0.895 13 C -0.171 4.171 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.595 5.595 17 C 0.067 3.933 18 C 0.245 3.755 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.067 4.067 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.029 5.117 5.558 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.142 4.142 4 C 0.074 3.926 5 F -0.111 7.111 6 C -0.118 4.118 7 C -0.089 4.089 8 C 0.354 3.646 9 O -0.393 6.393 10 O -0.234 6.234 11 C 0.014 3.986 12 H 0.123 0.877 13 C -0.228 4.228 14 C 0.294 3.706 15 O -0.396 6.396 16 N -0.329 5.329 17 C -0.077 4.077 18 C 0.127 3.873 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.086 4.086 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.725 5.415 5.247 24.895 hybrid contribution 1.035 0.060 0.694 1.247 sum -22.690 5.475 5.941 24.086 Atomic orbital electron populations 1.20824 0.89582 1.03581 1.03058 1.19666 0.96865 0.91522 0.99156 1.21298 0.92263 0.99633 1.00986 1.17502 0.90084 0.81350 1.03625 1.91551 1.80652 1.45012 1.93878 1.21616 1.02452 0.90131 0.97623 1.18882 0.93088 0.90364 1.06570 1.21047 0.81588 0.89222 0.72769 1.90816 1.69524 1.32899 1.46030 1.86669 1.19317 1.34445 1.82926 1.22697 0.93588 0.83382 0.98983 0.87694 1.22313 1.03366 1.03556 0.93601 1.19732 0.84929 0.85388 0.80585 1.90701 1.70396 1.26518 1.51957 1.48060 1.19374 1.04215 1.61233 1.21986 0.99799 0.86021 0.99892 1.19382 0.75370 0.98713 0.93873 1.21454 0.91195 1.50927 0.93162 0.92292 1.24941 0.98512 0.94983 0.95664 1.69939 1.16967 1.49999 1.16310 0.86429 0.81285 0.77713 0.81911 1.19769 1.20930 1.20831 1.21215 0.91879 0.99065 0.96394 0.90451 0.90928 0.90727 0.84057 0.82484 0.91178 0.88820 0.90558 0.93382 0.90083 0.91657 0.94592 0.93567 0.92684 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.01 36.01 0.36 -0.17 16 2 C -0.07 -0.56 5.87 -104.69 -0.61 -1.17 16 3 C -0.12 -1.01 9.67 -39.42 -0.38 -1.39 16 4 C 0.09 1.00 7.29 -39.48 -0.29 0.71 16 5 F -0.13 -1.54 17.26 2.25 0.04 -1.50 16 6 C -0.10 -1.19 9.60 -39.10 -0.38 -1.57 16 7 C -0.09 -1.06 5.87 -104.99 -0.62 -1.68 16 8 C 0.51 7.45 7.87 34.61 0.27 7.72 16 9 O -0.50 -7.75 15.60 -19.25 -0.30 -8.05 16 10 O -0.32 -5.35 8.68 -47.15 -0.41 -5.76 16 11 C 0.07 1.19 2.17 -27.89 -0.06 1.13 16 12 H 0.11 1.59 6.73 -51.93 -0.35 1.24 16 13 C -0.17 -2.39 9.14 37.16 0.34 -2.05 16 14 C 0.51 10.88 7.03 -10.99 -0.08 10.81 16 15 O -0.52 -13.43 16.08 -13.94 -0.22 -13.66 16 16 N -0.60 -12.57 2.86 -182.95 -0.52 -13.10 16 17 C 0.07 1.03 9.80 59.85 0.59 1.62 16 18 C 0.25 6.37 5.18 -5.19 -0.03 6.34 16 19 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.07 -0.65 9.24 -39.17 -0.36 -1.01 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.16 2.03 7.61 -52.48 -0.40 1.63 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.23 5.46 -51.92 -0.28 0.94 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.26 8.04 -51.92 -0.42 0.84 16 38 H 0.07 0.84 4.31 -51.93 -0.22 0.61 16 39 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.15 1.26 7.65 -52.49 -0.40 0.86 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -34.07 366.37 -7.22 -41.29 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.37 Total: -1.58 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.66 Total: 5.83 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.21 Total: -38.74 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.93 Total: -27.47 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.07 -7.22 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745566455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.781 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds