Wall clock time and date at job start Tue Mar 31 2020 14:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38345 * 119.91313 * 2 1 4 4 C 1.38556 * 120.27840 * 180.02562 * 3 2 1 5 5 F 1.35106 * 119.94917 * 179.97438 * 4 3 2 6 6 C 1.38192 * 120.09816 * 0.02562 * 4 3 2 7 7 C 1.39587 * 119.82175 * 359.97438 * 6 4 3 8 8 C 1.47730 * 120.13538 * 180.27691 * 7 6 4 9 9 O 1.21476 * 119.99465 * 179.72616 * 8 7 6 10 10 O 1.34709 * 120.00349 * 359.72270 * 8 7 6 11 11 C 1.45201 * 116.99874 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47453 * 29.99920 * 11 10 8 13 13 C 1.52997 * 109.46869 * 270.00000 * 11 10 8 14 14 C 1.50698 * 109.46902 * 149.99793 * 11 10 8 15 15 O 1.21275 * 120.00477 * 8.56735 * 14 11 10 16 16 N 1.34776 * 119.99649 * 188.56291 * 14 11 10 17 17 C 1.46497 * 120.00312 * 4.59083 * 16 14 11 18 18 C 1.46505 * 120.00067 * 184.58289 * 16 14 11 19 19 C 1.50709 * 109.46814 * 90.00188 * 18 16 14 20 20 H 1.07997 * 120.00155 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99760 * 180.02562 * 19 18 16 22 22 N 1.31509 * 120.00233 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99680 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47372 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47417 * 120.00159 * 23 21 19 26 26 H 1.48505 * 109.47050 * 239.99625 * 23 21 19 27 27 C 1.37933 * 119.90494 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47216 * 269.97713 * 1 2 3 29 29 H 1.08997 * 109.46639 * 29.97753 * 1 2 3 30 30 H 1.09004 * 109.47192 * 149.97548 * 1 2 3 31 31 H 1.08001 * 119.85860 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.08960 * 180.02562 * 6 4 3 33 33 H 1.08992 * 109.47468 * 67.15603 * 13 11 10 34 34 H 1.09008 * 109.47160 * 187.15401 * 13 11 10 35 35 H 1.08998 * 109.47579 * 307.14980 * 13 11 10 36 36 H 1.08997 * 109.47448 * 86.11846 * 17 16 14 37 37 H 1.09011 * 109.47222 * 206.11592 * 17 16 14 38 38 H 1.08996 * 109.47241 * 326.11253 * 17 16 14 39 39 H 1.08996 * 109.47354 * 210.00242 * 18 16 14 40 40 H 1.09004 * 109.46933 * 330.00838 * 18 16 14 41 41 H 0.97001 * 119.99939 * 179.97438 * 22 21 19 42 42 H 1.07994 * 120.05452 * 359.95917 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1991 0.0000 4 6 3.5825 1.2080 -0.0005 5 9 4.2495 2.3829 -0.0011 6 6 4.2831 0.0168 -0.0016 7 6 3.5912 -1.1955 -0.0016 8 6 4.3332 -2.4729 0.0034 9 8 3.7285 -3.5264 0.0084 10 8 5.6803 -2.4695 0.0024 11 6 6.3427 -3.7616 0.0070 12 1 5.7162 -4.4930 -0.5035 13 6 6.5765 -4.2096 1.4510 14 6 7.6663 -3.6499 -0.7050 15 8 8.0885 -2.5615 -1.0331 16 7 8.3808 -4.7599 -0.9769 17 6 7.8264 -6.0811 -0.6717 18 6 9.7119 -4.6452 -1.5780 19 6 10.7486 -4.5499 -0.4883 20 1 10.4462 -4.5729 0.5482 21 6 12.0831 -4.4333 -0.8147 22 7 12.4514 -4.4057 -2.0769 23 14 13.3681 -4.3158 0.5360 24 1 12.6999 -4.3700 1.8611 25 1 14.3194 -5.4495 0.4142 26 1 14.1066 -3.0340 0.4066 27 6 2.1948 -1.1957 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6532 2.1323 0.0004 32 1 5.3631 0.0239 -0.0016 33 1 5.6178 -4.4129 1.9281 34 1 7.1843 -5.1145 1.4569 35 1 7.0941 -3.4209 1.9970 36 1 7.2125 -6.4192 -1.5064 37 1 8.6402 -6.7880 -0.5095 38 1 7.2142 -6.0192 0.2280 39 1 9.9101 -5.5235 -2.1923 40 1 9.7542 -3.7503 -2.1990 41 1 13.3902 -4.3233 -2.3065 42 1 1.6541 -2.1306 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745566455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:24 Heat of formation + Delta-G solvation = -154.411011 kcal Electronic energy + Delta-G solvation = -26777.036889 eV Core-core repulsion = 22636.360475 eV Total energy + Delta-G solvation = -4140.676414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.02371 -42.08526 -40.79329 -39.84602 -37.70100 -36.73617 -34.92505 -34.17105 -32.99068 -31.91413 -29.66673 -28.09960 -27.68944 -26.48152 -25.66833 -24.02593 -23.04270 -21.86340 -20.50449 -19.33667 -18.71075 -18.52382 -17.84674 -17.50750 -17.34322 -17.30653 -17.03404 -16.71601 -16.66701 -16.26593 -16.04707 -15.05512 -14.81434 -14.57005 -14.47871 -14.37439 -14.29380 -14.07202 -13.72196 -13.62958 -13.33972 -13.14656 -13.10045 -12.91711 -12.76083 -12.75260 -12.67306 -12.61565 -12.38150 -12.21904 -12.00958 -11.82150 -11.68548 -10.67367 -10.66412 -10.18281 -9.83662 -9.54287 -8.24704 -6.39460 -0.62686 -0.01365 1.11486 1.24023 1.36452 1.39039 1.50050 1.56574 2.26597 2.40186 2.42880 2.97346 3.05686 3.33471 3.38129 3.58685 3.70546 3.79133 3.89576 3.93452 4.06355 4.21061 4.33593 4.51413 4.56854 4.61583 4.64335 4.76552 4.83482 4.88113 4.89690 4.92107 5.03819 5.10644 5.12787 5.19198 5.26559 5.32939 5.49895 5.67531 5.76375 6.01360 6.39305 6.57579 6.69693 7.16927 7.33878 8.83186 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.002732 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.107638 B =10244.698571 C =11131.430926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.108 4.108 4 C 0.080 3.920 5 F -0.142 7.142 6 C -0.117 4.117 7 C -0.106 4.106 8 C 0.510 3.490 9 O -0.512 6.512 10 O -0.340 6.340 11 C 0.081 3.919 12 H 0.126 0.874 13 C -0.165 4.165 14 C 0.500 3.500 15 O -0.579 6.579 16 N -0.599 5.599 17 C 0.060 3.940 18 C 0.258 3.742 19 C -0.542 4.542 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.284 1.284 27 C -0.063 4.063 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.031 0.969 40 H -0.001 1.001 41 H 0.268 0.732 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.779 4.583 7.287 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.126 4.126 4 C 0.061 3.939 5 F -0.121 7.121 6 C -0.136 4.136 7 C -0.108 4.108 8 C 0.356 3.644 9 O -0.402 6.402 10 O -0.255 6.255 11 C 0.023 3.977 12 H 0.143 0.857 13 C -0.221 4.221 14 C 0.287 3.713 15 O -0.459 6.459 16 N -0.331 5.331 17 C -0.082 4.082 18 C 0.137 3.863 19 C -0.581 4.581 20 H 0.076 0.924 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.210 1.210 27 C -0.081 4.081 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.191 0.809 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.049 0.951 40 H 0.017 0.983 41 H 0.076 0.924 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -26.515 4.832 6.991 27.844 hybrid contribution 1.780 0.260 0.098 1.802 sum -24.735 5.092 7.089 26.230 Atomic orbital electron populations 1.20942 0.86691 1.04930 1.04379 1.20061 0.98651 0.90388 0.96948 1.21658 0.90994 1.01291 0.98673 1.17672 0.91172 0.80484 1.04588 1.91524 1.81112 1.45348 1.94087 1.21472 1.01612 0.91182 0.99357 1.18858 0.94019 0.89011 1.08872 1.21448 0.80680 0.90157 0.72141 1.90788 1.69300 1.33323 1.46820 1.86683 1.20834 1.34614 1.83391 1.22592 0.90944 0.84025 1.00114 0.85671 1.22319 1.04907 1.03425 0.91494 1.20625 0.86440 0.84405 0.79839 1.90662 1.72246 1.28719 1.54299 1.48043 1.17875 1.06639 1.60532 1.22323 1.00395 0.82973 1.02491 1.18882 0.77983 0.96178 0.93246 1.21718 0.92035 1.50956 0.93385 0.92354 1.25876 1.00826 0.94403 0.98099 1.70058 1.17675 1.50694 1.18392 0.85342 0.78439 0.77868 0.79009 1.18843 1.19368 1.20966 1.21447 0.90642 1.00521 0.95473 0.88952 0.89205 0.89867 0.80950 0.84767 0.88492 0.87694 0.91731 0.90818 0.90088 0.88377 0.95060 0.98295 0.92355 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 71.24 0.71 0.13 16 2 C -0.06 -0.75 5.87 -19.91 -0.12 -0.87 16 3 C -0.11 -1.50 9.67 22.37 0.22 -1.29 16 4 C 0.08 1.69 7.29 22.33 0.16 1.85 16 5 F -0.14 -3.34 17.26 44.97 0.78 -2.57 16 6 C -0.12 -2.94 9.60 22.58 0.22 -2.72 16 7 C -0.11 -2.57 5.87 -20.10 -0.12 -2.69 16 8 C 0.51 14.90 7.87 70.33 0.55 15.45 16 9 O -0.51 -15.12 15.60 19.91 0.31 -14.81 16 10 O -0.34 -11.72 8.68 -49.84 -0.43 -12.16 16 11 C 0.08 2.68 2.17 29.85 0.06 2.74 16 12 H 0.13 3.59 6.73 -2.39 -0.02 3.57 16 13 C -0.16 -4.33 9.14 71.98 0.66 -3.67 16 14 C 0.50 22.06 7.03 87.66 0.62 22.68 16 15 O -0.58 -31.87 16.08 15.64 0.25 -31.62 16 16 N -0.60 -25.77 2.86 -851.12 -2.43 -28.20 16 17 C 0.06 1.76 9.80 127.77 1.25 3.01 16 18 C 0.26 13.99 5.18 85.63 0.44 14.44 16 19 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 20 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 21 C 0.01 0.40 5.46 84.65 0.46 0.87 16 22 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 23 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 C -0.06 -1.09 9.24 22.54 0.21 -0.88 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.22 8.08 -2.39 -0.02 0.20 16 30 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 31 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 32 H 0.13 3.89 7.61 -2.91 -0.02 3.87 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 2.49 5.46 -2.38 -0.01 2.48 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.41 8.04 -2.38 -0.02 2.39 16 38 H 0.10 2.25 4.31 -2.39 -0.01 2.24 16 39 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 40 H 0.00 -0.07 7.36 -2.38 -0.02 -0.09 16 41 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.16 2.34 7.65 -2.91 -0.02 2.31 16 Total: -1.00 -78.26 366.37 7.41 -70.85 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.05 Total: 9.46 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 5.57 Total: 18.23 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.15 Total: -84.17 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: 0.13 Total: -58.58 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.26 7.41 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745566455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.561 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds