Wall clock time and date at job start Tue Mar 31 2020 14:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38351 * 119.91168 * 2 1 4 4 C 1.38559 * 120.27692 * 180.02562 * 3 2 1 5 5 F 1.35094 * 119.94990 * 180.02562 * 4 3 2 6 6 C 1.38194 * 120.09931 * 359.97438 * 4 3 2 7 7 C 1.39583 * 119.82110 * 359.97438 * 6 4 3 8 8 C 1.47731 * 120.14081 * 180.02562 * 7 6 4 9 9 O 1.21472 * 120.00322 * 179.97438 * 8 7 6 10 10 O 1.34709 * 119.99822 * 359.97438 * 8 7 6 11 11 C 1.45200 * 116.99923 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47450 * 329.99934 * 11 10 8 13 13 C 1.53001 * 109.47331 * 89.99988 * 11 10 8 14 14 C 1.50702 * 109.47164 * 209.99525 * 11 10 8 15 15 O 1.21284 * 119.99980 * 0.02562 * 14 11 10 16 16 N 1.34779 * 120.00154 * 179.97438 * 14 11 10 17 17 C 1.46496 * 119.99730 * 0.02562 * 16 14 11 18 18 C 1.46501 * 120.00168 * 180.02562 * 16 14 11 19 19 C 1.50696 * 109.46929 * 90.00121 * 18 16 14 20 20 H 1.08000 * 120.00144 * 0.02562 * 19 18 16 21 21 C 1.37884 * 119.99715 * 179.97438 * 19 18 16 22 22 N 1.31515 * 119.99864 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99692 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47303 * 60.00104 * 23 21 19 25 25 H 1.48501 * 109.46808 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46999 * 299.99975 * 23 21 19 27 27 C 1.37938 * 119.90864 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47561 * 269.98445 * 1 2 3 29 29 H 1.09003 * 109.47267 * 29.98149 * 1 2 3 30 30 H 1.08997 * 109.47633 * 149.98285 * 1 2 3 31 31 H 1.07996 * 119.85995 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.09195 * 180.02562 * 6 4 3 33 33 H 1.09004 * 109.47333 * 59.99447 * 13 11 10 34 34 H 1.08996 * 109.47494 * 180.02562 * 13 11 10 35 35 H 1.09003 * 109.46745 * 299.99813 * 13 11 10 36 36 H 1.09000 * 109.47370 * 89.99713 * 17 16 14 37 37 H 1.09001 * 109.46971 * 209.99453 * 17 16 14 38 38 H 1.09003 * 109.47782 * 329.99688 * 17 16 14 39 39 H 1.08996 * 109.47152 * 210.00551 * 18 16 14 40 40 H 1.09001 * 109.46779 * 330.00412 * 18 16 14 41 41 H 0.96998 * 120.00080 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.04601 * 0.25891 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1992 0.0000 4 6 3.5824 1.2080 -0.0005 5 9 4.2494 2.3829 0.0000 6 6 4.2831 0.0169 -0.0005 7 6 3.5912 -1.1954 0.0005 8 6 4.3331 -2.4729 0.0011 9 8 3.7284 -3.5265 0.0025 10 8 5.6802 -2.4695 0.0001 11 6 6.3427 -3.7615 0.0013 12 1 5.7169 -4.4902 0.5166 13 6 6.5743 -4.2173 -1.4407 14 6 7.6674 -3.6461 0.7104 15 8 8.0184 -2.5800 1.1700 16 7 8.4617 -4.7279 0.8349 17 6 8.0374 -6.0157 0.2803 18 6 9.7492 -4.6159 1.5247 19 6 9.5590 -4.8996 2.9925 20 1 8.5773 -5.1399 3.3733 21 6 10.6385 -4.8536 3.8491 22 7 11.8340 -4.5616 3.3852 23 14 10.4028 -5.2061 5.6683 24 1 9.8662 -6.5799 5.8409 25 1 11.7080 -5.0924 6.3676 26 1 9.4470 -4.2255 6.2427 27 6 2.1947 -1.1957 -0.0005 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6532 2.1323 0.0004 32 1 5.3631 0.0239 -0.0005 33 1 7.2000 -3.4886 -1.9561 34 1 7.0712 -5.1874 -1.4399 35 1 5.6161 -4.3008 -1.9537 36 1 8.3890 -6.1021 -0.7479 37 1 8.4582 -6.8248 0.8773 38 1 6.9494 -6.0786 0.2986 39 1 10.4510 -5.3356 1.1034 40 1 10.1429 -3.6074 1.3977 41 1 12.5934 -4.5288 3.9878 42 1 1.6540 -2.1305 -0.0052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745566457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:27 Heat of formation + Delta-G solvation = -154.844166 kcal Electronic energy + Delta-G solvation = -26798.621116 eV Core-core repulsion = 22657.925919 eV Total energy + Delta-G solvation = -4140.695197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02960 -42.08971 -40.80244 -39.84948 -37.70087 -36.76280 -34.96835 -34.17007 -32.96171 -31.91912 -29.59299 -28.10760 -27.76791 -26.44470 -25.67718 -24.00277 -23.04844 -21.88075 -20.52280 -19.35962 -18.71513 -18.52817 -17.82765 -17.47814 -17.40756 -17.32028 -17.03158 -16.71241 -16.68070 -16.39928 -15.83720 -14.94061 -14.88965 -14.59755 -14.46050 -14.37213 -14.28751 -14.13833 -13.75326 -13.57677 -13.36744 -13.15133 -13.06784 -12.85848 -12.77138 -12.74930 -12.66091 -12.60917 -12.43792 -12.21470 -12.00012 -11.82563 -11.75169 -10.67016 -10.66643 -10.18781 -9.84214 -9.54849 -8.25718 -6.40444 -0.63163 -0.01909 1.10501 1.24378 1.35062 1.39447 1.46420 1.58017 2.25967 2.39666 2.42128 2.96854 3.04300 3.33735 3.37700 3.58018 3.70666 3.80468 3.89292 3.92860 4.05793 4.29252 4.33969 4.50599 4.59386 4.61013 4.65556 4.75956 4.84264 4.87567 4.89354 4.92605 5.03155 5.08109 5.11750 5.19053 5.25852 5.32381 5.48456 5.66991 5.75429 6.01082 6.38900 6.57543 6.67915 7.17018 7.33102 8.81506 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.002836 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.875006 B = 9871.907437 C =10467.020679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.108 4.108 4 C 0.081 3.919 5 F -0.141 7.141 6 C -0.116 4.116 7 C -0.107 4.107 8 C 0.510 3.490 9 O -0.514 6.514 10 O -0.339 6.339 11 C 0.079 3.921 12 H 0.119 0.881 13 C -0.167 4.167 14 C 0.499 3.501 15 O -0.580 6.580 16 N -0.598 5.598 17 C 0.066 3.934 18 C 0.260 3.740 19 C -0.548 4.548 20 H 0.052 0.948 21 C 0.010 3.990 22 N -0.926 5.926 23 Si 0.966 3.034 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.280 1.280 27 C -0.064 4.064 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.135 0.865 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.000 1.000 41 H 0.268 0.732 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.347 5.092 -11.728 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.126 4.126 4 C 0.061 3.939 5 F -0.120 7.120 6 C -0.135 4.135 7 C -0.108 4.108 8 C 0.356 3.644 9 O -0.404 6.404 10 O -0.255 6.255 11 C 0.021 3.979 12 H 0.136 0.864 13 C -0.224 4.224 14 C 0.286 3.714 15 O -0.460 6.460 16 N -0.330 5.330 17 C -0.075 4.075 18 C 0.139 3.861 19 C -0.587 4.587 20 H 0.070 0.930 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.791 3.209 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.206 1.206 27 C -0.082 4.082 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.191 0.809 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.077 0.923 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.066 5.345 -11.455 27.184 hybrid contribution 1.093 0.093 1.146 1.587 sum -22.973 5.438 -10.309 25.760 Atomic orbital electron populations 1.20939 0.86701 1.05038 1.04265 1.20059 0.98651 0.90387 0.96960 1.21662 0.91023 1.01265 0.98657 1.17660 0.91156 0.80487 1.04559 1.91520 1.81093 1.45310 1.94080 1.21467 1.01638 0.91125 0.99319 1.18857 0.94013 0.89036 1.08872 1.21456 0.80723 0.90158 0.72113 1.90788 1.69349 1.33404 1.46895 1.86656 1.20788 1.34694 1.83355 1.22602 0.90826 0.83837 1.00593 0.86352 1.22429 1.04792 1.04338 0.90841 1.20640 0.86303 0.84184 0.80277 1.90671 1.74993 1.29787 1.50539 1.48035 1.20120 1.09743 1.55120 1.22269 1.01461 0.84042 0.99728 1.18850 0.79957 0.96101 0.91162 1.21664 0.94530 1.48357 0.94127 0.92963 1.25838 0.94649 0.94604 1.03866 1.70030 1.00115 1.48976 1.37408 0.85487 0.77530 0.79193 0.78734 1.18295 1.20133 1.20588 1.21448 0.90689 1.00518 0.95545 0.89261 0.89016 0.89757 0.80896 0.84665 0.91383 0.86650 0.89240 0.89482 0.90592 0.89210 0.94702 0.98192 0.92262 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 71.23 0.71 0.06 16 2 C -0.06 -0.79 5.87 -19.91 -0.12 -0.91 16 3 C -0.11 -1.55 9.67 22.37 0.22 -1.33 16 4 C 0.08 1.72 7.29 22.34 0.16 1.88 16 5 F -0.14 -3.33 17.26 44.97 0.78 -2.56 16 6 C -0.12 -2.96 9.60 22.58 0.22 -2.75 16 7 C -0.11 -2.66 5.87 -20.10 -0.12 -2.77 16 8 C 0.51 15.37 7.87 70.33 0.55 15.92 16 9 O -0.51 -15.86 15.60 19.93 0.31 -15.54 16 10 O -0.34 -11.84 8.67 -49.80 -0.43 -12.27 16 11 C 0.08 2.62 2.18 29.85 0.07 2.69 16 12 H 0.12 3.63 6.42 -2.39 -0.02 3.62 16 13 C -0.17 -3.98 9.19 71.98 0.66 -3.32 16 14 C 0.50 22.04 7.15 87.66 0.63 22.67 16 15 O -0.58 -32.07 16.08 15.76 0.25 -31.82 16 16 N -0.60 -25.58 2.86 -851.13 -2.43 -28.01 16 17 C 0.07 1.91 8.80 127.77 1.12 3.04 16 18 C 0.26 14.07 5.16 85.63 0.44 14.51 16 19 C -0.55 -31.90 9.39 25.60 0.24 -31.66 16 20 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 21 C 0.01 0.57 5.46 84.66 0.46 1.03 16 22 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 23 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 27 C -0.06 -1.16 9.24 22.54 0.21 -0.95 16 28 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.09 0.24 8.08 -2.39 -0.02 0.22 16 30 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.14 3.92 7.61 -2.91 -0.02 3.90 16 33 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.12 2.22 4.53 -2.39 -0.01 2.21 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.93 6.95 -2.39 -0.02 1.91 16 37 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 38 H 0.09 2.05 6.01 -2.39 -0.01 2.04 16 39 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 40 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.16 2.48 7.65 -2.91 -0.02 2.45 16 Total: -1.00 -79.34 364.88 7.30 -72.04 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.05 Total: 8.60 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 5.46 Total: 18.11 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.15 Total: -83.86 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: 0.13 Total: -59.64 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.34 7.30 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745566457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.801 kcal (2) G-P(sol) polarization free energy of solvation -79.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds