Wall clock time and date at job start Tue Mar 31 2020 14:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38466 * 119.82254 * 2 1 4 4 C 1.37835 * 120.22303 * 179.71919 * 3 2 1 5 5 C 1.39716 * 119.87334 * 0.55743 * 4 3 2 6 6 C 1.47561 * 120.17159 * 179.74629 * 5 4 3 7 7 O 1.21494 * 119.99728 * 179.72376 * 6 5 4 8 8 O 1.34730 * 120.00386 * 359.72140 * 6 5 4 9 9 C 1.45194 * 116.99991 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47698 * 30.00120 * 9 8 6 11 11 C 1.53000 * 109.47271 * 269.99614 * 9 8 6 12 12 C 1.50704 * 109.47149 * 149.99996 * 9 8 6 13 13 O 1.21280 * 119.99982 * 16.02475 * 12 9 8 14 14 N 1.34781 * 120.00235 * 196.02591 * 12 9 8 15 15 C 1.46500 * 119.99649 * 5.36558 * 14 12 9 16 16 C 1.46498 * 119.99764 * 185.36123 * 14 12 9 17 17 C 1.50703 * 109.46816 * 90.00605 * 16 14 12 18 18 H 1.07995 * 119.99767 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99918 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 119.99997 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47158 * 90.00041 * 21 19 17 23 23 H 1.48500 * 109.47078 * 209.99751 * 21 19 17 24 24 H 1.48500 * 109.47354 * 329.99986 * 21 19 17 25 25 C 1.39881 * 119.65419 * 359.46729 * 5 4 3 26 26 F 1.35096 * 120.11378 * 180.27750 * 25 5 4 27 27 C 1.38206 * 119.82270 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47442 * 269.97414 * 1 2 3 29 29 H 1.09002 * 109.47178 * 29.97794 * 1 2 3 30 30 H 1.09002 * 109.47397 * 149.97860 * 1 2 3 31 31 H 1.08003 * 119.88744 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.06534 * 180.27532 * 4 3 2 33 33 H 1.09001 * 109.46936 * 66.14033 * 11 9 8 34 34 H 1.08997 * 109.47212 * 186.13928 * 11 9 8 35 35 H 1.08994 * 109.47385 * 306.14311 * 11 9 8 36 36 H 1.09000 * 109.47332 * 84.82548 * 15 14 12 37 37 H 1.08998 * 109.46712 * 204.82050 * 15 14 12 38 38 H 1.09000 * 109.47196 * 324.81664 * 15 14 12 39 39 H 1.09000 * 109.46520 * 209.99889 * 16 14 12 40 40 H 1.08993 * 109.47337 * 330.00026 * 16 14 12 41 41 H 0.97001 * 120.00045 * 179.97438 * 20 19 17 42 42 H 1.07996 * 119.93848 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2013 0.0000 4 6 3.5739 1.2109 0.0058 5 6 4.2783 0.0043 0.0000 6 6 5.7539 0.0070 0.0005 7 8 6.3633 -1.0441 0.0005 8 8 6.4256 1.1750 0.0010 9 6 7.8756 1.1015 0.0009 10 1 8.1936 0.1946 -0.5133 11 6 8.3851 1.0752 1.4434 12 6 8.4396 2.3053 -0.7090 13 8 7.7380 3.2737 -0.9116 14 7 9.7236 2.3058 -1.1188 15 6 10.5371 1.0954 -0.9804 16 6 10.3056 3.5168 -1.7027 17 6 10.9173 4.3568 -0.6112 18 1 10.8763 4.0221 0.4148 19 6 11.5294 5.5524 -0.9225 20 7 11.5798 5.9596 -2.1720 21 14 12.2871 6.5938 0.4305 22 1 13.7068 6.2019 0.6205 23 1 12.2161 8.0275 0.0501 24 1 11.5409 6.3799 1.6964 25 6 3.5775 -1.2062 -0.0005 26 9 4.2492 -2.3783 -0.0004 27 6 2.1943 -1.1990 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6509 2.1339 0.0004 32 1 4.1085 2.1494 0.0103 33 1 8.0671 0.1501 1.9242 34 1 9.4737 1.1301 1.4454 35 1 7.9774 1.9266 1.9883 36 1 10.3698 0.4450 -1.8389 37 1 11.5909 1.3695 -0.9322 38 1 10.2559 0.5711 -0.0670 39 1 11.0757 3.2391 -2.4223 40 1 9.5261 4.0879 -2.2070 41 1 12.0101 6.8009 -2.3910 42 1 1.6505 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750432218.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:29 Heat of formation + Delta-G solvation = -157.597870 kcal Electronic energy + Delta-G solvation = -26948.367416 eV Core-core repulsion = 22807.552810 eV Total energy + Delta-G solvation = -4140.814606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08928 -42.01432 -40.71502 -39.89303 -37.70554 -36.71494 -34.88979 -34.17905 -32.93332 -31.75063 -29.74600 -28.82546 -27.61353 -26.14038 -24.92310 -23.92772 -23.50863 -21.96752 -20.46493 -19.51401 -18.70528 -18.47768 -18.02422 -17.56958 -17.54084 -17.28554 -16.92600 -16.68686 -16.29634 -16.19546 -15.41888 -15.22069 -14.89867 -14.68409 -14.47998 -14.44584 -14.30885 -14.06046 -13.71306 -13.59361 -13.37207 -13.17441 -13.13776 -12.90021 -12.83272 -12.75500 -12.69613 -12.52500 -12.37461 -12.21963 -12.03092 -11.76276 -11.72210 -10.68082 -10.64927 -10.12403 -9.86401 -9.55635 -8.23863 -6.38829 -0.62186 0.06623 1.09088 1.26241 1.37653 1.40611 1.49736 1.56079 2.26875 2.41074 2.45734 2.97142 3.06363 3.32006 3.35161 3.57938 3.70118 3.77238 3.78402 4.04744 4.12861 4.24911 4.43895 4.53164 4.56356 4.60320 4.62928 4.81279 4.85682 4.88428 4.92197 4.95509 5.02685 5.04872 5.15317 5.19476 5.26176 5.38969 5.49501 5.71414 5.76249 6.01731 6.39554 6.56076 6.69704 7.15380 7.33899 8.83897 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.002688 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.843909 B =10414.651603 C =11116.491927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.009 4.009 3 C -0.139 4.139 4 C -0.034 4.034 5 C -0.196 4.196 6 C 0.505 3.495 7 O -0.521 6.521 8 O -0.334 6.334 9 C 0.080 3.920 10 H 0.119 0.881 11 C -0.158 4.158 12 C 0.504 3.496 13 O -0.575 6.575 14 N -0.600 5.600 15 C 0.066 3.934 16 C 0.258 3.742 17 C -0.544 4.544 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.148 3.852 26 F -0.131 7.131 27 C -0.166 4.166 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.030 0.970 40 H 0.001 0.999 41 H 0.268 0.732 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.627 -15.674 6.882 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.009 4.009 3 C -0.157 4.157 4 C -0.052 4.052 5 C -0.198 4.198 6 C 0.351 3.649 7 O -0.411 6.411 8 O -0.250 6.250 9 C 0.022 3.978 10 H 0.136 0.864 11 C -0.215 4.215 12 C 0.291 3.709 13 O -0.454 6.454 14 N -0.332 5.332 15 C -0.076 4.076 16 C 0.138 3.862 17 C -0.583 4.583 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.195 1.195 25 C 0.129 3.871 26 F -0.110 7.110 27 C -0.184 4.184 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.019 0.981 41 H 0.077 0.923 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.651 -15.379 6.642 26.592 hybrid contribution 1.262 0.532 0.156 1.378 sum -19.390 -14.848 6.798 25.350 Atomic orbital electron populations 1.21050 0.86941 1.05123 1.04535 1.20506 0.98728 0.91128 0.90532 1.21504 0.92593 1.00074 1.01487 1.21575 0.95564 0.96325 0.91719 1.19211 0.88533 0.95396 1.16648 1.21442 0.89534 0.81513 0.72397 1.90834 1.70377 1.32823 1.47085 1.86654 1.21026 1.33672 1.83633 1.22592 0.77317 0.97800 1.00098 0.86377 1.22168 1.03466 1.04276 0.91625 1.20507 0.82503 0.88466 0.79467 1.90646 1.59685 1.37712 1.57377 1.48063 1.10383 1.14797 1.59948 1.22156 0.96970 0.85512 1.02914 1.18889 0.92218 0.81643 0.93481 1.21684 1.36586 1.05773 0.94221 0.92345 1.25877 0.96494 0.98610 0.98153 1.70056 1.44630 1.22799 1.19299 0.85377 0.78999 0.77523 0.78693 1.18819 1.20727 1.19544 1.17986 0.91041 0.79387 0.98720 1.91553 1.81016 1.45373 1.93017 1.21311 0.89854 1.01693 1.05543 0.88544 0.89220 0.89470 0.81406 0.83847 0.89108 0.88269 0.91395 0.91047 0.89883 0.89179 0.95172 0.98069 0.92330 0.81142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 10.00 71.24 0.71 0.23 16 2 C -0.01 -0.10 5.88 -19.82 -0.12 -0.22 16 3 C -0.14 -1.95 9.67 22.23 0.22 -1.74 16 4 C -0.03 -0.73 9.61 22.53 0.22 -0.51 16 5 C -0.20 -5.21 5.88 -20.06 -0.12 -5.33 16 6 C 0.50 16.53 7.87 70.28 0.55 17.08 16 7 O -0.52 -18.50 14.60 19.86 0.29 -18.21 16 8 O -0.33 -11.92 8.72 -50.16 -0.44 -12.35 16 9 C 0.08 2.78 2.14 29.85 0.06 2.84 16 10 H 0.12 3.73 6.32 -2.39 -0.02 3.71 16 11 C -0.16 -4.51 9.19 71.98 0.66 -3.85 16 12 C 0.50 22.48 6.95 87.66 0.61 23.09 16 13 O -0.57 -31.23 16.13 15.23 0.25 -30.99 16 14 N -0.60 -26.25 2.86 -851.13 -2.43 -28.68 16 15 C 0.07 2.06 9.79 127.77 1.25 3.31 16 16 C 0.26 14.05 5.18 85.63 0.44 14.49 16 17 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 18 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 19 C 0.01 0.45 5.46 84.65 0.46 0.91 16 20 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 21 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.15 3.48 7.29 22.69 0.17 3.64 16 26 F -0.13 -3.63 15.55 44.97 0.70 -2.93 16 27 C -0.17 -2.47 9.66 22.28 0.22 -2.25 16 28 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.09 0.20 8.08 -2.39 -0.02 0.18 16 30 H 0.09 0.19 8.08 -2.39 -0.02 0.17 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.14 3.34 7.61 -2.91 -0.02 3.32 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 2.58 6.33 -2.39 -0.02 2.57 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 38 H 0.09 2.25 4.92 -2.39 -0.01 2.24 16 39 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 40 H 0.00 0.07 7.35 -2.39 -0.02 0.06 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -79.67 365.57 7.30 -72.37 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.04 Total: 9.14 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 5.57 Total: 20.88 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.15 Total: -84.36 kcal Atomic # 8 Polarization: -61.65 SS G_CDS: 0.10 Total: -61.55 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.70 Total: -2.93 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -79.67 7.30 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750432218.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.228 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds