Wall clock time and date at job start Tue Mar 31 2020 14:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38471 * 119.82867 * 2 1 4 4 C 1.37834 * 120.22671 * 179.72364 * 3 2 1 5 5 C 1.39716 * 119.87179 * 0.55467 * 4 3 2 6 6 C 1.47569 * 120.17122 * 179.74703 * 5 4 3 7 7 O 1.21484 * 119.99654 * 179.72307 * 6 5 4 8 8 O 1.34731 * 120.00127 * 359.71957 * 6 5 4 9 9 C 1.45194 * 116.99863 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47239 * 330.00051 * 9 8 6 11 11 C 1.52997 * 109.47339 * 90.00293 * 9 8 6 12 12 C 1.50708 * 109.47032 * 210.00394 * 9 8 6 13 13 O 1.21280 * 119.99888 * 354.99873 * 12 9 8 14 14 N 1.34777 * 119.99928 * 174.99982 * 12 9 8 15 15 C 1.46496 * 119.99889 * 359.97438 * 14 12 9 16 16 C 1.46500 * 119.99779 * 179.97438 * 14 12 9 17 17 C 1.50694 * 109.46954 * 89.99836 * 16 14 12 18 18 H 1.08003 * 120.00102 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99994 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00198 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99970 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.46938 * 89.99678 * 21 19 17 23 23 H 1.48503 * 109.47406 * 209.99550 * 21 19 17 24 24 H 1.48494 * 109.47306 * 329.99829 * 21 19 17 25 25 C 1.39875 * 119.65411 * 359.46981 * 5 4 3 26 26 F 1.35102 * 120.11215 * 180.27208 * 25 5 4 27 27 C 1.38209 * 119.82239 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46926 * 269.98054 * 1 2 3 29 29 H 1.09005 * 109.47056 * 29.97477 * 1 2 3 30 30 H 1.08997 * 109.47725 * 149.97965 * 1 2 3 31 31 H 1.08004 * 119.88496 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.06743 * 180.27674 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99705 * 11 9 8 34 34 H 1.09001 * 109.46832 * 299.99896 * 11 9 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.47373 * 90.00178 * 15 14 12 37 37 H 1.09005 * 109.46584 * 209.99714 * 15 14 12 38 38 H 1.08999 * 109.47384 * 329.99408 * 15 14 12 39 39 H 1.08993 * 109.47001 * 209.99914 * 16 14 12 40 40 H 1.09002 * 109.47216 * 330.00108 * 16 14 12 41 41 H 0.97002 * 120.00096 * 179.97438 * 20 19 17 42 42 H 1.07999 * 119.93702 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2013 0.0000 4 6 3.5740 1.2108 0.0057 5 6 4.2783 0.0042 -0.0001 6 6 5.7540 0.0068 0.0003 7 8 6.3632 -1.0443 0.0003 8 8 6.4257 1.1748 0.0007 9 6 7.8757 1.1012 0.0006 10 1 8.1936 0.1938 0.5140 11 6 8.3850 1.0760 -1.4419 12 6 8.4398 2.3044 0.7115 13 8 7.6991 3.1858 1.0929 14 7 9.7673 2.4009 0.9235 15 6 10.6618 1.3360 0.4632 16 6 10.3156 3.5708 1.6141 17 6 10.3530 3.3068 3.0972 18 1 10.0036 2.3618 3.4865 19 6 10.8341 4.2711 3.9573 20 7 10.8662 4.0409 5.2517 21 14 11.4390 5.9051 3.2840 22 1 10.3095 6.8680 3.2329 23 1 12.5059 6.4402 4.1675 24 1 11.9823 5.7064 1.9164 25 6 3.5774 -1.2062 -0.0006 26 9 4.2491 -2.3785 -0.0007 27 6 2.1943 -1.1991 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6511 2.1339 -0.0004 32 1 4.1086 2.1493 0.0102 33 1 8.0672 1.9835 -1.9554 34 1 7.9771 0.2058 -1.9561 35 1 9.4737 1.0213 -1.4420 36 1 10.9927 1.5530 -0.5524 37 1 11.5277 1.2785 1.1229 38 1 10.1308 0.3842 0.4769 39 1 11.3259 3.7648 1.2540 40 1 9.6862 4.4382 1.4152 41 1 11.2051 4.7192 5.8567 42 1 1.6504 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750432221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:33 Heat of formation + Delta-G solvation = -130.979789 kcal Electronic energy + Delta-G solvation = -27017.677507 eV Core-core repulsion = 22878.017148 eV Total energy + Delta-G solvation = -4139.660360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.12617 -40.75310 -39.48490 -38.79091 -36.38316 -35.05186 -33.46258 -32.77406 -31.62274 -30.98535 -28.42934 -28.07236 -26.30084 -24.67087 -23.33645 -23.16129 -21.99676 -20.85142 -18.93921 -18.37791 -17.31308 -17.01900 -16.97678 -16.43190 -16.30531 -16.10749 -15.60458 -15.42154 -14.77576 -14.67287 -14.43197 -14.04995 -13.91382 -13.69304 -13.53076 -13.46518 -13.00769 -12.58225 -12.45881 -12.35282 -12.30464 -12.22333 -12.06141 -11.86188 -11.66833 -11.54846 -11.41093 -10.98343 -10.72704 -10.58693 -10.53961 -10.17609 -9.57234 -9.37510 -9.07443 -9.03970 -8.61350 -7.81625 -6.10735 -4.10384 0.26418 0.82988 2.28632 2.36910 3.15289 3.27639 3.29389 3.33504 3.35163 3.71861 3.80583 4.21791 4.36887 4.37314 4.52126 4.72208 4.76140 4.79687 4.93280 5.04215 5.05931 5.13912 5.22172 5.27356 5.40871 5.54794 5.59835 5.61811 5.64184 5.68613 5.77495 5.81834 5.94340 6.03383 6.15949 6.32028 6.42630 6.62498 6.87091 7.21452 7.56350 7.65316 8.08452 8.42819 8.79651 8.92949 9.48414 11.02591 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002869 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.415975 B = 9757.630587 C =10452.581806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.147 4.147 4 C -0.023 4.023 5 C -0.167 4.167 6 C 0.507 3.493 7 O -0.496 6.496 8 O -0.320 6.320 9 C 0.072 3.928 10 H 0.109 0.891 11 C -0.170 4.170 12 C 0.512 3.488 13 O -0.519 6.519 14 N -0.591 5.591 15 C 0.075 3.925 16 C 0.217 3.783 17 C -0.532 4.532 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.265 1.265 25 C 0.169 3.831 26 F -0.114 7.114 27 C -0.174 4.174 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.761 -9.141 -15.583 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.024 4.024 3 C -0.165 4.165 4 C -0.042 4.042 5 C -0.169 4.169 6 C 0.352 3.648 7 O -0.385 6.385 8 O -0.235 6.235 9 C 0.014 3.986 10 H 0.126 0.874 11 C -0.227 4.227 12 C 0.297 3.703 13 O -0.394 6.394 14 N -0.324 5.324 15 C -0.068 4.068 16 C 0.097 3.903 17 C -0.571 4.571 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 C 0.149 3.851 26 F -0.092 7.092 27 C -0.192 4.192 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.172 0.828 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.836 -8.913 -15.193 24.367 hybrid contribution 0.728 0.419 -0.042 0.841 sum -16.109 -8.494 -15.235 23.743 Atomic orbital electron populations 1.20923 0.89913 1.03621 1.03281 1.20055 0.96823 0.92139 0.93334 1.21145 0.93790 0.98286 1.03243 1.21546 0.94220 0.97471 0.90922 1.19173 0.90147 0.93922 1.13641 1.20876 0.88400 0.82300 0.73265 1.90874 1.69707 1.32434 1.45511 1.86619 1.20872 1.32653 1.83388 1.22620 0.77167 1.00176 0.98687 0.87351 1.22290 1.03150 1.03619 0.93684 1.19750 0.83021 0.87136 0.80415 1.90697 1.57687 1.40529 1.50493 1.47725 1.04983 1.22805 1.56897 1.21886 0.95646 0.90008 0.99304 1.19723 0.93752 0.83720 0.93083 1.21318 1.42869 1.03738 0.89135 0.90725 1.24861 0.95164 0.98282 0.94682 1.69899 1.46407 1.34907 1.02209 0.86836 0.79030 0.84513 0.79222 1.19841 1.21019 1.19021 1.17665 0.89835 0.80363 0.97227 1.91607 1.80396 1.44598 1.92641 1.20962 0.91338 0.99884 1.07059 0.90062 0.90592 0.90865 0.84251 0.82824 0.90931 0.91137 0.89198 0.92963 0.90025 0.91971 0.94800 0.94345 0.92492 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.00 36.00 0.36 -0.18 16 2 C -0.02 -0.18 5.88 -104.55 -0.62 -0.79 16 3 C -0.15 -1.22 9.67 -39.64 -0.38 -1.60 16 4 C -0.02 -0.26 9.62 -39.18 -0.38 -0.63 16 5 C -0.17 -2.23 5.88 -104.93 -0.62 -2.85 16 6 C 0.51 8.24 7.87 34.54 0.27 8.51 16 7 O -0.50 -8.91 14.60 -19.25 -0.28 -9.19 16 8 O -0.32 -5.50 8.67 -47.24 -0.41 -5.91 16 9 C 0.07 1.21 2.17 -27.88 -0.06 1.15 16 10 H 0.11 1.80 6.15 -51.93 -0.32 1.48 16 11 C -0.17 -2.18 9.28 37.16 0.34 -1.84 16 12 C 0.51 10.79 7.10 -10.98 -0.08 10.71 16 13 O -0.52 -13.07 16.09 -14.05 -0.23 -13.30 16 14 N -0.59 -12.18 2.86 -182.96 -0.52 -12.70 16 15 C 0.08 1.14 8.92 59.84 0.53 1.67 16 16 C 0.22 5.28 4.23 -5.20 -0.02 5.26 16 17 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 18 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 21 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 25 C 0.17 2.08 7.29 -38.94 -0.28 1.79 16 26 F -0.11 -1.62 15.55 2.25 0.04 -1.59 16 27 C -0.17 -1.55 9.66 -39.56 -0.38 -1.93 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 31 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.15 1.70 7.61 -52.48 -0.40 1.30 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.99 5.12 -51.93 -0.27 0.73 16 36 H 0.05 0.63 7.02 -51.93 -0.36 0.26 16 37 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 38 H 0.06 0.82 6.08 -51.93 -0.32 0.51 16 39 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 40 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 41 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -36.44 360.02 -6.97 -43.42 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -5.35 Total: -1.58 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.75 Total: 5.62 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.25 Total: -39.64 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.92 Total: -28.40 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.44 -6.97 -43.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750432221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.565 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds