Wall clock time and date at job start Tue Mar 31 2020 13:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38285 * 119.84922 * 2 1 4 4 C 1.38242 * 120.06361 * 179.76007 * 3 2 1 5 5 C 1.38615 * 119.87730 * 0.23147 * 4 3 2 6 6 C 1.39245 * 120.16349 * 359.96350 * 5 4 3 7 7 C 1.38210 * 119.84830 * 180.25992 * 2 1 3 8 8 O 1.35903 * 120.79418 * 180.22467 * 6 5 4 9 9 C 1.42958 * 117.75508 * 339.75067 * 8 6 5 10 10 C 1.53532 * 108.79672 * 49.45671 * 9 8 6 11 11 N 1.40422 * 120.08877 * 179.83110 * 5 4 3 12 12 C 1.34770 * 121.15390 * 346.41096 * 11 5 4 13 13 O 1.21614 * 120.00108 * 353.84872 * 12 11 5 14 14 C 1.47593 * 120.00325 * 173.85033 * 12 11 5 15 15 C 1.40043 * 119.89050 * 334.76577 * 14 12 11 16 16 C 1.36300 * 120.09828 * 179.71604 * 15 14 12 17 17 C 1.40901 * 119.89648 * 0.57497 * 16 15 14 18 18 C 1.41091 * 120.10107 * 179.67126 * 17 16 15 19 19 H 1.08000 * 119.99830 * 205.54073 * 18 17 16 20 20 C 1.40231 * 120.00141 * 25.55322 * 18 17 16 21 21 N 1.30650 * 119.99711 * 16.74780 * 20 18 17 22 22 Si 1.86799 * 120.00021 * 196.75209 * 20 18 17 23 23 H 1.48500 * 109.46914 * 89.99944 * 22 20 18 24 24 H 1.48501 * 109.47043 * 209.99655 * 22 20 18 25 25 H 1.48498 * 109.46965 * 330.00031 * 22 20 18 26 26 C 1.40898 * 119.79612 * 359.69772 * 17 16 15 27 27 C 1.36304 * 119.89241 * 359.97438 * 26 17 16 28 28 H 1.08993 * 109.47741 * 89.99787 * 1 2 3 29 29 H 1.09003 * 109.47159 * 209.99998 * 1 2 3 30 30 H 1.09002 * 109.47298 * 329.99604 * 1 2 3 31 31 H 1.08002 * 119.96817 * 0.02823 * 3 2 1 32 32 H 1.08004 * 120.06042 * 180.25440 * 4 3 2 33 33 H 1.08001 * 119.97640 * 0.05360 * 7 2 1 34 34 H 1.09001 * 109.58418 * 289.65887 * 9 8 6 35 35 H 1.09002 * 109.57946 * 169.24803 * 9 8 6 36 36 H 1.08996 * 109.83825 * 182.27744 * 10 9 8 37 37 H 1.09004 * 109.89051 * 61.35088 * 10 9 8 38 38 H 1.07997 * 119.94951 * 0.02562 * 15 14 12 39 39 H 1.08005 * 120.05231 * 180.27151 * 16 15 14 40 40 H 0.96996 * 119.99691 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.05219 * 179.97438 * 26 17 16 42 42 H 1.08002 * 119.94663 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1994 0.0000 4 6 3.5776 1.2046 0.0050 5 6 4.2726 0.0053 0.0052 6 6 3.5818 -1.2037 0.0011 7 6 2.1948 -1.1987 -0.0054 8 8 4.2502 -2.3870 0.0058 9 6 5.6139 -2.3831 -0.4233 10 6 6.3611 -1.2624 0.3137 11 7 5.6769 0.0053 0.0067 12 6 6.3743 1.1266 -0.2630 13 8 5.7931 2.1326 -0.6224 14 6 7.8435 1.1336 -0.1223 15 6 8.4652 0.2335 0.7520 16 6 9.8221 0.2324 0.8810 17 6 10.5984 1.1470 0.1420 18 6 12.0028 1.1544 0.2773 19 1 12.5605 2.0558 0.0704 20 6 12.6745 -0.0088 0.6802 21 7 12.0722 -1.1664 0.6158 22 14 14.4303 0.0969 1.3091 23 1 14.4178 0.3008 2.7800 24 1 15.1470 -1.1641 0.9903 25 1 15.1217 1.2379 0.6570 26 6 9.9680 2.0546 -0.7321 27 6 8.6110 2.0438 -0.8595 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6523 2.1330 0.0005 32 1 4.1151 2.1414 0.0092 33 1 1.6520 -2.1324 -0.0105 34 1 5.6583 -2.2065 -1.4980 35 1 6.0732 -3.3436 -0.1895 36 1 7.3942 -1.2179 -0.0309 37 1 6.3372 -1.4449 1.3880 38 1 7.8689 -0.4643 1.3212 39 1 10.3011 -0.4651 1.5522 40 1 12.5367 -1.9709 0.8949 41 1 10.5590 2.7577 -1.3002 42 1 8.1268 2.7394 -1.5290 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759164148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:12 Heat of formation + Delta-G solvation = -6.916125 kcal Electronic energy + Delta-G solvation = -26507.073891 eV Core-core repulsion = 22803.562560 eV Total energy + Delta-G solvation = -3703.511331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13525 -38.93990 -37.77064 -37.23948 -35.14512 -34.05489 -32.32643 -30.58816 -30.17871 -29.66490 -28.79486 -26.92845 -25.45353 -24.19540 -22.66179 -22.17778 -21.01576 -20.42341 -19.22944 -17.71180 -17.60658 -16.88555 -16.72574 -15.79896 -15.61821 -15.25581 -14.92068 -14.62067 -14.27104 -13.90611 -13.76790 -13.65793 -13.36776 -13.29222 -12.87283 -12.77779 -12.47296 -12.21998 -12.08004 -12.03792 -11.67053 -11.51467 -11.37632 -11.24373 -11.14482 -10.97003 -10.75000 -10.64084 -10.11732 -9.80661 -9.61397 -9.43486 -8.92020 -8.28397 -7.83346 -7.74153 -7.42722 -7.14801 -4.73134 1.39635 1.56525 2.12546 2.83996 2.86968 2.89619 2.91659 2.99077 3.40161 3.53385 3.66157 3.98309 4.36436 4.64029 4.82412 4.96408 5.04933 5.16861 5.19299 5.33401 5.39469 5.49101 5.56851 5.58937 5.61962 5.75952 5.82577 5.86857 5.96630 6.10112 6.15306 6.41873 6.42794 6.64785 6.69346 6.70698 6.77531 6.89641 6.98286 7.07460 7.30381 7.43143 7.52667 7.62731 7.72688 7.81841 7.93989 8.26730 8.50332 8.61051 8.70790 9.76696 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.002959 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.901363 B = 9461.219555 C =10281.471733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.090 4.090 3 C -0.129 4.129 4 C -0.116 4.116 5 C 0.093 3.907 6 C 0.086 3.914 7 C -0.130 4.130 8 O -0.316 6.316 9 C 0.045 3.955 10 C 0.056 3.944 11 N -0.560 5.560 12 C 0.577 3.423 13 O -0.546 6.546 14 C -0.287 4.287 15 C -0.081 4.081 16 C -0.175 4.175 17 C 0.129 3.871 18 C -0.438 4.438 19 H 0.086 0.914 20 C 0.074 3.926 21 N -0.770 5.770 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.236 4.236 27 C -0.019 4.019 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.288 0.712 41 H 0.100 0.900 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -4.055 0.633 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.002 4.002 6 C 0.039 3.961 7 C -0.149 4.149 8 O -0.230 6.230 9 C -0.031 4.031 10 C -0.066 4.066 11 N -0.284 5.284 12 C 0.376 3.624 13 O -0.427 6.427 14 C -0.292 4.292 15 C -0.099 4.099 16 C -0.194 4.194 17 C 0.125 3.875 18 C -0.465 4.465 19 H 0.104 0.896 20 C -0.148 4.148 21 N -0.393 5.393 22 Si 0.739 3.261 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.255 4.255 27 C -0.038 4.038 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.183 0.817 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.389 -3.963 0.521 12.070 hybrid contribution 1.082 -0.117 0.213 1.109 sum -10.307 -4.080 0.733 11.109 Atomic orbital electron populations 1.20704 0.91103 1.02465 1.02038 1.19594 0.95802 0.92357 1.01353 1.20911 0.93618 0.97317 1.02977 1.21845 0.94057 0.98721 0.98977 1.18102 0.83266 0.93853 1.05002 1.18537 0.91538 0.83214 1.02790 1.20138 0.90143 0.98369 1.06220 1.85987 1.25818 1.28588 1.82637 1.23407 0.79919 1.00639 0.99094 1.23334 1.00030 0.82435 1.00829 1.45720 1.03226 1.11130 1.68303 1.18838 0.88149 0.80818 0.74637 1.90497 1.70928 1.33218 1.48068 1.18697 0.89120 1.08483 1.12861 1.20991 0.95473 0.96269 0.97207 1.21009 0.91850 1.03429 1.03082 1.17820 0.93366 0.89281 0.87018 1.19899 0.92265 0.97341 1.36995 0.89570 1.26117 1.01417 0.94611 0.92666 1.69716 1.39020 0.99299 1.31292 0.86170 0.80558 0.79173 0.80209 1.18857 1.19921 1.18225 1.20723 0.93558 1.06219 1.05047 1.20298 0.93531 0.94356 0.95657 0.91460 0.91788 0.91656 0.85923 0.81704 0.85371 0.91305 0.86075 0.84818 0.89806 0.87684 0.85995 0.90088 0.88185 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.00 36.00 0.36 -0.62 16 2 C -0.09 -1.17 5.88 -104.62 -0.62 -1.78 16 3 C -0.13 -1.86 9.69 -39.56 -0.38 -2.24 16 4 C -0.12 -2.03 8.93 -39.44 -0.35 -2.38 16 5 C 0.09 1.67 6.33 -83.41 -0.53 1.14 16 6 C 0.09 1.40 6.52 -39.04 -0.25 1.14 16 7 C -0.13 -1.81 9.62 -39.42 -0.38 -2.19 16 8 O -0.32 -4.78 10.33 -19.44 -0.20 -4.98 16 9 C 0.05 0.60 7.18 37.43 0.27 0.87 16 10 C 0.06 0.86 4.72 -3.33 -0.02 0.84 16 11 N -0.56 -10.38 3.01 -113.49 -0.34 -10.72 16 12 C 0.58 12.26 7.39 -12.45 -0.09 12.17 16 13 O -0.55 -12.50 13.46 5.27 0.07 -12.43 16 14 C -0.29 -6.30 5.55 -104.73 -0.58 -6.88 16 15 C -0.08 -1.70 7.45 -39.60 -0.29 -1.99 16 16 C -0.17 -4.03 8.63 -39.27 -0.34 -4.37 16 17 C 0.13 3.11 5.57 -106.80 -0.59 2.52 16 18 C -0.44 -10.39 9.05 -37.75 -0.34 -10.73 16 19 H 0.09 1.96 7.90 -52.49 -0.41 1.55 16 20 C 0.07 1.63 5.15 -17.31 -0.09 1.54 16 21 N -0.77 -17.39 10.95 55.56 0.61 -16.78 16 22 Si 0.92 16.56 29.59 -169.99 -5.03 11.53 16 23 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 26 C -0.24 -5.44 9.73 -39.27 -0.38 -5.82 16 27 C -0.02 -0.43 9.52 -39.61 -0.38 -0.81 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.17 3.20 5.16 -52.56 -0.27 2.93 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.13 2.16 4.91 -51.93 -0.26 1.91 16 37 H 0.08 1.20 7.52 -51.93 -0.39 0.81 16 38 H 0.11 1.92 4.73 -52.49 -0.25 1.67 16 39 H 0.12 2.85 6.18 -52.48 -0.32 2.53 16 40 H 0.29 5.84 8.29 -40.82 -0.34 5.50 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.10 2.15 7.83 -52.49 -0.41 1.74 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -27.23 342.84 -9.54 -36.77 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -4.83 Total: 11.05 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -4.99 Total: -19.60 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.27 Total: -27.51 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.13 Total: -17.41 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.23 -9.54 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759164148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.857 kcal (2) G-P(sol) polarization free energy of solvation -27.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds