Wall clock time and date at job start Tue Mar 31 2020 14:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38247 * 119.94128 * 2 1 4 4 C 1.38429 * 120.35585 * 180.02562 * 3 2 1 5 5 C 1.37885 * 120.22186 * 359.97438 * 4 3 2 6 6 C 1.39680 * 119.87175 * 359.97438 * 5 4 3 7 7 C 1.47569 * 120.16784 * 179.97438 * 6 5 4 8 8 O 1.21488 * 119.99284 * 179.97438 * 7 6 5 9 9 O 1.34728 * 120.00021 * 359.97438 * 7 6 5 10 10 C 1.45206 * 116.99733 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46660 * 329.99499 * 10 9 7 12 12 C 1.52997 * 109.47147 * 89.99735 * 10 9 7 13 13 C 1.50697 * 109.47064 * 210.00136 * 10 9 7 14 14 O 1.21285 * 120.00040 * 354.99791 * 13 10 9 15 15 N 1.34778 * 119.99902 * 174.99933 * 13 10 9 16 16 C 1.46493 * 120.00087 * 359.97438 * 15 13 10 17 17 C 1.46505 * 119.99823 * 179.97438 * 15 13 10 18 18 C 1.50697 * 109.46900 * 89.99912 * 17 15 13 19 19 H 1.07995 * 120.00161 * 0.02562 * 18 17 15 20 20 C 1.37880 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31522 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46851 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46994 * 119.99941 * 22 20 18 25 25 H 1.48495 * 109.47157 * 240.00302 * 22 20 18 26 26 C 1.38280 * 119.94082 * 180.23380 * 2 1 3 27 27 F 1.35101 * 120.10802 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46908 * 90.00308 * 1 2 3 29 29 H 1.09000 * 109.47068 * 210.00155 * 1 2 3 30 30 H 1.08991 * 109.46999 * 330.00552 * 1 2 3 31 31 H 1.07999 * 119.82250 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.88998 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.06234 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.46832 * 60.00119 * 12 10 9 36 36 H 1.09004 * 109.47261 * 300.00100 * 12 10 9 37 37 H 1.09002 * 109.47115 * 89.99747 * 16 15 13 38 38 H 1.08998 * 109.47192 * 209.99907 * 16 15 13 39 39 H 1.08999 * 109.47064 * 329.99847 * 16 15 13 40 40 H 1.08997 * 109.46961 * 210.00478 * 17 15 13 41 41 H 1.09005 * 109.46984 * 329.99937 * 17 15 13 42 42 H 0.97003 * 119.99529 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5812 1.2080 -0.0005 5 6 4.2839 0.0216 -0.0005 6 6 3.5962 -1.1942 0.0005 7 6 4.3417 -2.4678 0.0000 8 8 3.7403 -3.5234 0.0014 9 8 5.6889 -2.4598 -0.0021 10 6 6.3557 -3.7497 -0.0031 11 1 5.7328 -4.4810 0.5118 12 6 6.5876 -4.2028 -1.4460 13 6 7.6805 -3.6308 0.7052 14 8 8.0697 -2.5469 1.0856 15 7 8.4328 -4.7291 0.9161 16 6 7.9625 -6.0383 0.4571 17 6 9.7210 -4.6134 1.6043 18 6 9.5145 -4.7782 3.0879 19 1 8.5230 -4.9522 3.4790 20 6 10.5915 -4.7080 3.9459 21 7 11.7990 -4.4967 3.4694 22 14 10.3356 -4.9131 5.7849 23 1 8.8943 -5.1391 6.0619 24 1 11.1204 -6.0779 6.2670 25 1 10.7887 -3.6858 6.4875 26 6 2.1971 -1.1982 -0.0049 27 9 1.5226 -2.3688 -0.0091 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6531 2.1310 -0.0004 32 1 4.1126 2.1481 -0.0009 33 1 5.3638 0.0324 -0.0005 34 1 7.0886 -5.1708 -1.4467 35 1 7.2106 -3.4713 -1.9608 36 1 5.6294 -4.2887 -1.9583 37 1 8.3146 -6.2151 -0.5592 38 1 8.3500 -6.8151 1.1163 39 1 6.8728 -6.0589 0.4728 40 1 10.3967 -5.3886 1.2430 41 1 10.1530 -3.6328 1.4042 42 1 12.5567 -4.4469 4.0731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761287652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:39 Heat of formation + Delta-G solvation = -134.707326 kcal Electronic energy + Delta-G solvation = -27106.240586 eV Core-core repulsion = 22966.418588 eV Total energy + Delta-G solvation = -4139.821998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.14019 -40.72934 -39.39204 -38.69502 -36.35255 -34.93447 -33.49840 -32.85242 -31.67472 -30.99333 -27.73655 -27.40708 -26.19992 -25.24492 -24.08090 -22.46575 -22.14247 -20.83478 -18.90161 -18.06721 -17.69737 -17.04908 -16.56450 -16.42287 -16.28094 -15.98759 -15.63456 -15.36257 -14.97030 -14.59771 -14.29485 -13.91203 -13.76896 -13.57190 -13.49746 -13.26750 -12.95587 -12.79827 -12.41191 -12.29228 -12.19242 -12.10711 -12.06052 -11.68783 -11.63723 -11.42574 -11.21638 -10.90777 -10.72290 -10.61514 -10.54555 -10.18336 -9.64640 -9.39521 -9.00586 -8.92965 -8.46453 -7.74588 -6.07422 -4.12204 0.28311 0.80003 2.30904 2.38073 3.23247 3.28973 3.30468 3.36765 3.41783 3.78497 3.85931 4.22562 4.40494 4.43785 4.50242 4.72386 4.81440 4.84027 4.96636 5.08344 5.10768 5.19852 5.27401 5.32160 5.49888 5.51816 5.62555 5.65869 5.68606 5.78777 5.83645 5.85537 5.97406 5.99675 6.21356 6.33807 6.42970 6.96455 7.36889 7.44686 7.66010 7.88919 8.18571 8.27016 8.82754 8.97703 9.53008 11.00765 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.002898 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.725941 B = 9659.317943 C =10199.619078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.138 4.138 3 C -0.059 4.059 4 C -0.140 4.140 5 C -0.034 4.034 6 C -0.156 4.156 7 C 0.506 3.494 8 O -0.497 6.497 9 O -0.319 6.319 10 C 0.071 3.929 11 H 0.107 0.893 12 C -0.170 4.170 13 C 0.510 3.490 14 O -0.520 6.520 15 N -0.595 5.595 16 C 0.076 3.924 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.161 3.839 27 F -0.113 7.113 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.797 8.100 -11.405 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.139 4.139 3 C -0.077 4.077 4 C -0.158 4.158 5 C -0.052 4.052 6 C -0.158 4.158 7 C 0.351 3.649 8 O -0.385 6.385 9 O -0.234 6.234 10 C 0.012 3.988 11 H 0.124 0.876 12 C -0.227 4.227 13 C 0.294 3.706 14 O -0.395 6.395 15 N -0.329 5.329 16 C -0.068 4.068 17 C 0.128 3.872 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 C 0.141 3.859 27 F -0.091 7.091 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.171 0.829 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.543 8.297 -11.137 23.975 hybrid contribution -0.139 -0.608 1.091 1.257 sum -19.682 7.689 -10.046 23.397 Atomic orbital electron populations 1.20726 0.89409 1.03702 1.03066 1.19896 0.97473 0.91354 1.05151 1.21216 0.94306 0.97128 0.95035 1.21252 0.94018 0.98668 1.01859 1.21574 1.01744 0.90106 0.91802 1.19190 0.91273 0.92773 1.12523 1.20881 0.81684 0.89076 0.73303 1.90871 1.69552 1.32640 1.45476 1.86629 1.19163 1.34374 1.83271 1.22673 0.93649 0.83663 0.98770 0.87552 1.22285 1.03397 1.03337 0.93709 1.19730 0.84950 0.85347 0.80597 1.90698 1.71583 1.26649 1.50616 1.48067 1.22453 1.05439 1.56905 1.21854 0.98983 0.86619 0.99378 1.19365 0.77619 0.98884 0.91356 1.21465 0.94079 1.49607 0.91542 0.92359 1.24936 0.94978 0.94986 0.99175 1.69944 0.98793 1.49366 1.35209 0.86428 0.78265 0.77731 0.84937 1.19778 1.20910 1.20806 1.17518 0.88000 0.81784 0.98630 1.91581 1.79545 1.45328 1.92685 0.90591 0.90928 0.90620 0.84342 0.84169 0.82851 0.89182 0.90896 0.91262 0.93067 0.90245 0.92317 0.94557 0.93613 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.83 36.00 0.35 -0.39 16 2 C -0.14 -1.26 5.88 -104.60 -0.62 -1.87 16 3 C -0.06 -0.43 9.69 -39.51 -0.38 -0.81 16 4 C -0.14 -1.13 10.03 -39.64 -0.40 -1.53 16 5 C -0.03 -0.38 9.62 -39.17 -0.38 -0.75 16 6 C -0.16 -2.09 5.88 -104.93 -0.62 -2.71 16 7 C 0.51 8.25 7.87 34.54 0.27 8.52 16 8 O -0.50 -8.90 14.60 -19.26 -0.28 -9.18 16 9 O -0.32 -5.55 8.67 -47.23 -0.41 -5.96 16 10 C 0.07 1.21 2.17 -27.89 -0.06 1.15 16 11 H 0.11 1.78 6.15 -51.93 -0.32 1.46 16 12 C -0.17 -2.27 9.28 37.16 0.34 -1.93 16 13 C 0.51 10.99 7.10 -10.99 -0.08 10.91 16 14 O -0.52 -13.44 16.09 -14.05 -0.23 -13.66 16 15 N -0.60 -12.68 2.86 -182.96 -0.52 -13.20 16 16 C 0.08 1.19 8.92 59.84 0.53 1.72 16 17 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 18 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 22 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.16 1.99 7.23 -38.94 -0.28 1.71 16 27 F -0.11 -1.60 14.76 2.25 0.03 -1.56 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.53 7.64 -51.93 -0.40 0.13 16 30 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.15 1.71 7.61 -52.49 -0.40 1.31 16 34 H 0.09 1.05 5.12 -51.93 -0.27 0.79 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 38 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.06 0.79 6.08 -51.93 -0.32 0.48 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -35.41 362.54 -7.34 -42.75 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.36 Total: -2.58 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.75 Total: 6.73 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.21 Total: -38.94 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.92 Total: -28.81 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.41 -7.34 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761287652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.957 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds