Wall clock time and date at job start Tue Mar 31 2020 14:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38247 * 119.94128 * 2 1 4 4 C 1.38429 * 120.35585 * 180.02562 * 3 2 1 5 5 C 1.37885 * 120.22186 * 359.97438 * 4 3 2 6 6 C 1.39680 * 119.87175 * 359.97438 * 5 4 3 7 7 C 1.47569 * 120.16784 * 179.97438 * 6 5 4 8 8 O 1.21488 * 119.99284 * 179.97438 * 7 6 5 9 9 O 1.34728 * 120.00021 * 359.97438 * 7 6 5 10 10 C 1.45206 * 116.99733 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46660 * 329.99499 * 10 9 7 12 12 C 1.52997 * 109.47147 * 89.99735 * 10 9 7 13 13 C 1.50697 * 109.47064 * 210.00136 * 10 9 7 14 14 O 1.21285 * 120.00040 * 354.99791 * 13 10 9 15 15 N 1.34778 * 119.99902 * 174.99933 * 13 10 9 16 16 C 1.46493 * 120.00087 * 359.97438 * 15 13 10 17 17 C 1.46505 * 119.99823 * 179.97438 * 15 13 10 18 18 C 1.50697 * 109.46900 * 89.99912 * 17 15 13 19 19 H 1.07995 * 120.00161 * 0.02562 * 18 17 15 20 20 C 1.37880 * 120.00017 * 179.97438 * 18 17 15 21 21 N 1.31522 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46851 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46994 * 119.99941 * 22 20 18 25 25 H 1.48495 * 109.47157 * 240.00302 * 22 20 18 26 26 C 1.38280 * 119.94082 * 180.23380 * 2 1 3 27 27 F 1.35101 * 120.10802 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.46908 * 90.00308 * 1 2 3 29 29 H 1.09000 * 109.47068 * 210.00155 * 1 2 3 30 30 H 1.08991 * 109.46999 * 330.00552 * 1 2 3 31 31 H 1.07999 * 119.82250 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.88998 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.06234 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.46832 * 60.00119 * 12 10 9 36 36 H 1.09004 * 109.47261 * 300.00100 * 12 10 9 37 37 H 1.09002 * 109.47115 * 89.99747 * 16 15 13 38 38 H 1.08998 * 109.47192 * 209.99907 * 16 15 13 39 39 H 1.08999 * 109.47064 * 329.99847 * 16 15 13 40 40 H 1.08997 * 109.46961 * 210.00478 * 17 15 13 41 41 H 1.09005 * 109.46984 * 329.99937 * 17 15 13 42 42 H 0.97003 * 119.99529 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1980 0.0000 4 6 3.5812 1.2080 -0.0005 5 6 4.2839 0.0216 -0.0005 6 6 3.5962 -1.1942 0.0005 7 6 4.3417 -2.4678 0.0000 8 8 3.7403 -3.5234 0.0014 9 8 5.6889 -2.4598 -0.0021 10 6 6.3557 -3.7497 -0.0031 11 1 5.7328 -4.4810 0.5118 12 6 6.5876 -4.2028 -1.4460 13 6 7.6805 -3.6308 0.7052 14 8 8.0697 -2.5469 1.0856 15 7 8.4328 -4.7291 0.9161 16 6 7.9625 -6.0383 0.4571 17 6 9.7210 -4.6134 1.6043 18 6 9.5145 -4.7782 3.0879 19 1 8.5230 -4.9522 3.4790 20 6 10.5915 -4.7080 3.9459 21 7 11.7990 -4.4967 3.4694 22 14 10.3356 -4.9131 5.7849 23 1 8.8943 -5.1391 6.0619 24 1 11.1204 -6.0779 6.2670 25 1 10.7887 -3.6858 6.4875 26 6 2.1971 -1.1982 -0.0049 27 9 1.5226 -2.3688 -0.0091 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6531 2.1310 -0.0004 32 1 4.1126 2.1481 -0.0009 33 1 5.3638 0.0324 -0.0005 34 1 7.0886 -5.1708 -1.4467 35 1 7.2106 -3.4713 -1.9608 36 1 5.6294 -4.2887 -1.9583 37 1 8.3146 -6.2151 -0.5592 38 1 8.3500 -6.8151 1.1163 39 1 6.8728 -6.0589 0.4728 40 1 10.3967 -5.3886 1.2430 41 1 10.1530 -3.6328 1.4042 42 1 12.5567 -4.4469 4.0731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761287652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:38 Heat of formation + Delta-G solvation = -155.680132 kcal Electronic energy + Delta-G solvation = -27107.150035 eV Core-core repulsion = 22966.418588 eV Total energy + Delta-G solvation = -4140.731447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.09343 -42.02523 -40.71259 -39.82704 -37.70976 -36.73945 -34.95016 -34.21522 -33.01206 -31.88468 -29.63841 -28.06875 -27.70068 -26.40838 -25.65667 -24.04781 -22.89417 -22.03714 -20.49660 -19.22064 -18.73359 -18.67060 -18.24296 -17.57627 -17.49769 -17.33256 -16.94662 -16.71554 -16.43708 -15.95401 -15.68205 -15.03049 -14.88563 -14.59287 -14.41540 -14.30472 -14.28015 -14.12949 -13.75623 -13.56719 -13.42494 -13.36479 -13.11062 -12.92835 -12.85077 -12.79784 -12.66782 -12.55982 -12.35650 -12.25130 -12.02549 -11.74887 -11.71256 -10.67628 -10.67364 -10.17335 -9.77228 -9.55745 -8.26290 -6.40682 -0.60520 0.04760 1.08072 1.27558 1.34691 1.36891 1.48453 1.57005 2.25194 2.39396 2.47878 2.99371 3.03705 3.30898 3.35128 3.56647 3.68078 3.77663 3.82634 4.02981 4.17198 4.27702 4.36649 4.51620 4.55727 4.64979 4.72575 4.76991 4.81846 4.83295 4.91543 4.99950 5.04405 5.07959 5.17888 5.18716 5.22538 5.26839 5.48106 5.72160 5.74983 6.00861 6.38140 6.56142 6.67726 7.15737 7.32535 8.81298 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.002898 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.725941 B = 9659.317943 C =10199.619078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.133 4.133 3 C -0.040 4.040 4 C -0.128 4.128 5 C -0.047 4.047 6 C -0.184 4.184 7 C 0.504 3.496 8 O -0.522 6.522 9 O -0.333 6.333 10 C 0.078 3.922 11 H 0.112 0.888 12 C -0.161 4.161 13 C 0.502 3.498 14 O -0.575 6.575 15 N -0.598 5.598 16 C 0.068 3.932 17 C 0.260 3.740 18 C -0.547 4.547 19 H 0.050 0.950 20 C 0.011 3.989 21 N -0.925 5.925 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.266 1.266 25 H -0.280 1.280 26 C 0.134 3.866 27 F -0.132 7.132 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.003 0.997 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.922 9.159 -11.613 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.134 4.134 3 C -0.058 4.058 4 C -0.146 4.146 5 C -0.065 4.065 6 C -0.186 4.186 7 C 0.350 3.650 8 O -0.412 6.412 9 O -0.249 6.249 10 C 0.020 3.980 11 H 0.130 0.870 12 C -0.218 4.218 13 C 0.289 3.711 14 O -0.455 6.455 15 N -0.331 5.331 16 C -0.074 4.074 17 C 0.139 3.861 18 C -0.586 4.586 19 H 0.068 0.932 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.791 3.209 23 H -0.196 1.196 24 H -0.191 1.191 25 H -0.205 1.205 26 C 0.114 3.886 27 F -0.110 7.110 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.202 0.798 32 H 0.191 0.809 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.687 9.314 -11.375 26.201 hybrid contribution 0.493 -0.841 1.123 1.487 sum -21.194 8.473 -10.252 25.022 Atomic orbital electron populations 1.20831 0.87449 1.04521 1.04109 1.20308 0.98910 0.90612 1.03590 1.21751 0.94007 0.98052 0.91962 1.21651 0.94681 0.98563 0.99682 1.21624 1.01484 0.90626 0.92760 1.19239 0.91781 0.92137 1.15467 1.21467 0.81022 0.90121 0.72384 1.90833 1.69644 1.33699 1.47051 1.86635 1.20147 1.34542 1.83550 1.22598 0.90890 0.83956 1.00558 0.87036 1.22291 1.04479 1.04141 0.90881 1.20516 0.86202 0.84467 0.79944 1.90656 1.73182 1.28717 1.52955 1.48046 1.21057 1.07725 1.56224 1.22202 1.00668 0.83501 1.01038 1.18873 0.79848 0.96329 0.91026 1.21703 0.93840 1.50044 0.92964 0.93212 1.25817 0.94643 0.94396 1.04010 1.70044 0.99598 1.49766 1.37025 0.85383 0.78343 0.78157 0.79016 1.19562 1.19142 1.20528 1.17898 0.87772 0.82435 1.00506 1.91524 1.79750 1.46611 1.93099 0.89342 0.92125 0.87805 0.79825 0.80928 0.83938 0.87091 0.90982 0.89733 0.89499 0.90533 0.89742 0.94682 0.97857 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.83 71.23 0.70 -0.47 16 2 C -0.13 -2.13 5.88 -19.85 -0.12 -2.25 16 3 C -0.04 -0.43 9.69 22.32 0.22 -0.21 16 4 C -0.13 -1.71 10.03 22.23 0.22 -1.49 16 5 C -0.05 -1.02 9.62 22.53 0.22 -0.81 16 6 C -0.18 -5.09 5.88 -20.06 -0.12 -5.20 16 7 C 0.50 17.10 7.87 70.28 0.55 17.65 16 8 O -0.52 -19.32 14.60 19.87 0.29 -19.03 16 9 O -0.33 -12.08 8.67 -50.00 -0.43 -12.51 16 10 C 0.08 2.71 2.17 29.85 0.06 2.78 16 11 H 0.11 3.74 6.15 -2.39 -0.01 3.73 16 12 C -0.16 -4.13 9.28 71.98 0.67 -3.46 16 13 C 0.50 22.40 7.10 87.66 0.62 23.02 16 14 O -0.58 -31.45 16.09 15.70 0.25 -31.19 16 15 N -0.60 -25.99 2.86 -851.14 -2.43 -28.42 16 16 C 0.07 2.04 8.92 127.77 1.14 3.18 16 17 C 0.26 14.07 5.16 85.63 0.44 14.52 16 18 C -0.55 -31.97 9.39 25.60 0.24 -31.73 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.01 0.62 5.46 84.65 0.46 1.09 16 21 N -0.92 -55.77 13.29 21.45 0.28 -55.49 16 22 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 C 0.13 3.31 7.23 22.69 0.16 3.48 16 27 F -0.13 -3.83 14.76 44.97 0.66 -3.17 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.80 7.64 -2.39 -0.02 0.78 16 30 H 0.10 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.14 3.35 7.61 -2.91 -0.02 3.33 16 34 H 0.11 2.34 5.12 -2.39 -0.01 2.32 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.09 2.03 7.02 -2.39 -0.02 2.02 16 38 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 39 H 0.08 2.13 6.08 -2.39 -0.01 2.11 16 40 H 0.04 1.88 8.07 -2.39 -0.02 1.86 16 41 H 0.00 0.20 7.42 -2.38 -0.02 0.19 16 42 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -82.19 362.54 7.18 -75.02 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.05 Total: 7.26 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 5.48 Total: 20.09 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.15 Total: -83.91 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: 0.11 Total: -62.73 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.66 Total: -3.17 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -82.19 7.18 -75.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761287652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.664 kcal (2) G-P(sol) polarization free energy of solvation -82.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds